RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 RABGEF1Q9UJ41 708 aa8.6□□□□□ -1.03
PTPN4-206ENST00000441089 SPATA31D1Q6ZQQ2 1576 aa8.6□□□□□ -1.03
PTPN4-206ENST00000441089 GTPBP6O43824 516 aaPredicted RBP8.59□□□□□ -1.03
PTPN4-206ENST00000441089 PDE4AP27815 886 aa8.59□□□□□ -1.03
PTPN4-206ENST00000441089 WBP1LQ9NX94 342 aa8.59□□□□□ -1.03
PTPN4-206ENST00000441089 ERICH3Q5RHP9 1530 aa8.59□□□□□ -1.03
PTPN4-206ENST00000441089 RUSC2Q8N2Y8 1516 aa8.59□□□□□ -1.03
PTPN4-206ENST00000441089 SOWAHBA6NEL2 793 aa8.58□□□□□ -1.04
PTPN4-206ENST00000441089 MFSD10Q14728 455 aa8.58□□□□□ -1.04
PTPN4-206ENST00000441089 CADPS2Q86UW7 1296 aa8.58□□□□□ -1.04
PTPN4-206ENST00000441089 ANKK1Q8NFD2 765 aa8.58□□□□□ -1.04
PTPN4-206ENST00000441089 DDX27Q96GQ7 796 aaKnown RBP8.58□□□□□ -1.04
PTPN4-206ENST00000441089 MAP3K4Q9Y6R4 1608 aa8.58□□□□□ -1.04
PTPN4-206ENST00000441089 ASXL2Q76L83 1435 aa8.57□□□□□ -1.04
PTPN4-206ENST00000441089 CERKQ8TCT0 537 aa8.57□□□□□ -1.04
PTPN4-206ENST00000441089 SEPT9Q9UHD8 586 aaPredicted RBP8.57□□□□□ -1.04
PTPN4-206ENST00000441089 ABCC2Q92887 1545 aa8.56□□□□□ -1.04
PTPN4-206ENST00000441089 MAP3K9P80192 1104 aa8.56□□□□□ -1.04
PTPN4-206ENST00000441089 Q6ZNB5 142 aa8.56□□□□□ -1.04
PTPN4-206ENST00000441089 ZFRQ96KR1 1074 aaKnown RBP8.56□□□□□ -1.04
PTPN4-206ENST00000441089 KIAA1468Q9P260 1216 aa8.56□□□□□ -1.04
PTPN4-206ENST00000441089 PCF11O94913 1555 aaKnown RBP8.56□□□□□ -1.04
PTPN4-206ENST00000441089 WRNQ14191 1432 aaPredicted RBP eCLIP8.55□□□□□ -1.04
PTPN4-206ENST00000441089 KIAA0586Q9BVV6 1533 aa8.54□□□□□ -1.04
PTPN4-206ENST00000441089 CUL7Q14999 1698 aa8.54□□□□□ -1.04
PTPN4-206ENST00000441089 PTPRMP28827 1452 aa8.53□□□□□ -1.04
PTPN4-206ENST00000441089 KIF21BO75037 1637 aa8.53□□□□□ -1.04
PTPN4-206ENST00000441089 PTPRGP23470 1445 aa8.52□□□□□ -1.05
PTPN4-206ENST00000441089 EPRSP07814 1512 aaKnown RBP8.51□□□□□ -1.05
PTPN4-206ENST00000441089 ADAMTSL3P82987 1691 aa8.51□□□□□ -1.05
PTPN4-206ENST00000441089 TYW1BQ6NUM6 668 aa8.51□□□□□ -1.05
PTPN4-206ENST00000441089 LAPTM4BQ86VI4 370 aa8.51□□□□□ -1.05
PTPN4-206ENST00000441089 PHF14O94880 888 aa8.5□□□□□ -1.05
PTPN4-206ENST00000441089 C6orf132Q5T0Z8 1188 aa8.49□□□□□ -1.05
PTPN4-206ENST00000441089 KCNC4Q03721 635 aa8.48□□□□□ -1.05
PTPN4-206ENST00000441089 FBXW7Q969H0 707 aa8.48□□□□□ -1.05
PTPN4-206ENST00000441089 RYDENQ9NUL5 291 aaKnown RBP8.48□□□□□ -1.05
PTPN4-206ENST00000441089 UHRF1BP1LA0JNW5 1464 aa8.48□□□□□ -1.05
PTPN4-206ENST00000441089 TRIM6-TRIM34B2RNG4 842 aa8.47□□□□□ -1.05
PTPN4-206ENST00000441089 RBM33Q96EV2 1170 aaKnown RBP8.46□□□□□ -1.06
PTPN4-206ENST00000441089 HPS5Q9UPZ3 1129 aa8.46□□□□□ -1.06
PTPN4-206ENST00000441089 BIVM-ERCC5R4GMW8 1640 aa8.46□□□□□ -1.06
PTPN4-206ENST00000441089 CFAP43Q8NDM7 1665 aa8.46□□□□□ -1.06
PTPN4-206ENST00000441089 TNIKQ9UKE5 1360 aa8.46□□□□□ -1.06
PTPN4-206ENST00000441089 CARMIL2Q6F5E8 1435 aa8.46□□□□□ -1.06
PTPN4-206ENST00000441089 C3orf80F5H4A9 247 aa8.45□□□□□ -1.06
PTPN4-206ENST00000441089 DPYSL4O14531 572 aa8.45□□□□□ -1.06
PTPN4-206ENST00000441089 TSKSQ9UJT2 592 aa8.45□□□□□ -1.06
PTPN4-206ENST00000441089 MAGI3Q5TCQ9 1506 aa8.44□□□□□ -1.06
PTPN4-206ENST00000441089 KDM5BQ9UGL1 1544 aa8.44□□□□□ -1.06
PTPN4-206ENST00000441089 BCORL1Q5H9F3 1711 aa8.44□□□□□ -1.06
PTPN4-206ENST00000441089 FAM98CQ17RN3 349 aaKnown RBP8.44□□□□□ -1.06
PTPN4-206ENST00000441089 TTBK1Q5TCY1 1321 aaPredicted RBP8.44□□□□□ -1.06
PTPN4-206ENST00000441089 MADDQ8WXG6 1647 aa8.43□□□□□ -1.06
PTPN4-206ENST00000441089 ONECUT3O60422 494 aaPredicted RBP8.43□□□□□ -1.06
PTPN4-206ENST00000441089 CAMK2BQ13554 666 aa8.43□□□□□ -1.06
PTPN4-206ENST00000441089 TSR1Q2NL82 804 aaKnown RBP8.43□□□□□ -1.06
PTPN4-206ENST00000441089 NYAP1Q6ZVC0 841 aa8.43□□□□□ -1.06
PTPN4-206ENST00000441089 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.43□□□□□ -1.06
PTPN4-206ENST00000441089 FAM198AQ9UFP1 575 aa8.43□□□□□ -1.06
PTPN4-206ENST00000441089 TSR3Q9UJK0 312 aaKnown RBP8.43□□□□□ -1.06
PTPN4-206ENST00000441089 UACAQ9BZF9 1416 aa8.43□□□□□ -1.06
PTPN4-206ENST00000441089 ZCCHC11Q5TAX3 1644 aaKnown RBP8.43□□□□□ -1.06
PTPN4-206ENST00000441089 HSPA2P54652 639 aa8.42□□□□□ -1.06
PTPN4-206ENST00000441089 DDX12PQ92771 950 aa8.42□□□□□ -1.06
PTPN4-206ENST00000441089 WDR7Q9Y4E6 1490 aa8.41□□□□□ -1.06
PTPN4-206ENST00000441089 CD109Q6YHK3 1445 aa8.41□□□□□ -1.06
PTPN4-206ENST00000441089 GFRA3O60609 400 aa8.41□□□□□ -1.06
PTPN4-206ENST00000441089 PRIM1P49642 420 aaKnown RBP8.41□□□□□ -1.06
PTPN4-206ENST00000441089 TJAP1Q5JTD0 557 aa8.41□□□□□ -1.06
PTPN4-206ENST00000441089 LRCH3Q96II8 777 aa8.41□□□□□ -1.06
PTPN4-206ENST00000441089 ARAP3Q8WWN8 1544 aa8.4□□□□□ -1.06
PTPN4-206ENST00000441089 SMAPO00193 183 aa8.4□□□□□ -1.06
PTPN4-206ENST00000441089 EPAS1Q99814 870 aa8.4□□□□□ -1.06
PTPN4-206ENST00000441089 RIMS1Q86UR5 1692 aaKnown RBP8.4□□□□□ -1.07
PTPN4-206ENST00000441089 TRAF7Q6Q0C0 670 aa8.39□□□□□ -1.07
PTPN4-206ENST00000441089 ARID4BQ4LE39 1312 aaPredicted RBP8.38□□□□□ -1.07
PTPN4-206ENST00000441089 SUPT5HO00267 1087 aaKnown RBP8.38□□□□□ -1.07
PTPN4-206ENST00000441089 PRKD2Q9BZL6 878 aa8.37□□□□□ -1.07
PTPN4-206ENST00000441089 PHLDB1Q86UU1 1377 aa8.36□□□□□ -1.07
PTPN4-206ENST00000441089 SAMD7Q7Z3H4 446 aa8.36□□□□□ -1.07
PTPN4-206ENST00000441089 ZNF516Q92618 1163 aa8.36□□□□□ -1.07
PTPN4-206ENST00000441089 SETD1BQ9UPS6 1966 aaKnown RBP8.35□□□□□ -1.07
PTPN4-206ENST00000441089 IQSEC2Q5JU85 1478 aa8.35□□□□□ -1.07
PTPN4-206ENST00000441089 EN1Q05925 392 aaPredicted RBP8.35□□□□□ -1.07
PTPN4-206ENST00000441089 PPP1R18Q6NYC8 613 aa8.35□□□□□ -1.07
PTPN4-206ENST00000441089 MTRQ99707 1265 aa8.35□□□□□ -1.07
PTPN4-206ENST00000441089 IQGAP2Q13576 1575 aa8.35□□□□□ -1.07
PTPN4-206ENST00000441089 NBR1Q14596 966 aa8.34□□□□□ -1.07
PTPN4-206ENST00000441089 AMER1Q5JTC6 1135 aaPredicted RBP8.34□□□□□ -1.07
PTPN4-206ENST00000441089 YEATS2Q9ULM3 1422 aa8.34□□□□□ -1.07
PTPN4-206ENST00000441089 PPP4CP60510 307 aa8.33□□□□□ -1.08
PTPN4-206ENST00000441089 LAPTM4AQ15012 233 aa8.33□□□□□ -1.08
PTPN4-206ENST00000441089 NKX2-3Q8TAU0 364 aa8.33□□□□□ -1.08
PTPN4-206ENST00000441089 PREX1Q8TCU6 1659 aa8.33□□□□□ -1.08
PTPN4-206ENST00000441089 STRCQ7RTU9 1775 aa8.32□□□□□ -1.08
PTPN4-206ENST00000441089 POGZQ7Z3K3 1410 aa8.31□□□□□ -1.08
PTPN4-206ENST00000441089 NRG2O14511 850 aaPredicted RBP8.31□□□□□ -1.08
PTPN4-206ENST00000441089 MAP3K7O43318 606 aa8.31□□□□□ -1.08
PTPN4-206ENST00000441089 CDCA7LQ96GN5 454 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms