RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 SLC52A1Q9NWF4 448 aa10.39□□□□□ -0.75
TMEM39A-202ENST00000438581 PRAM1Q96QH2 718 aa10.39□□□□□ -0.75
TMEM39A-202ENST00000438581 SLC12A5Q9H2X9 1139 aa10.39□□□□□ -0.75
TMEM39A-202ENST00000438581 SLC26A8Q96RN1 970 aa10.39□□□□□ -0.75
TMEM39A-202ENST00000438581 UGGT2Q9NYU1 1516 aa10.38□□□□□ -0.75
TMEM39A-202ENST00000438581 FANCAO15360 1455 aa10.38□□□□□ -0.75
TMEM39A-202ENST00000438581 CNTLNQ9NXG0 1405 aa10.38□□□□□ -0.75
TMEM39A-202ENST00000438581 FBXO31Q5XUX0 539 aaPredicted RBP10.37□□□□□ -0.75
TMEM39A-202ENST00000438581 ELL2O00472 640 aaPredicted RBP10.37□□□□□ -0.75
TMEM39A-202ENST00000438581 NBR1Q14596 966 aa10.37□□□□□ -0.75
TMEM39A-202ENST00000438581 KIAA0556O60303 1618 aa10.37□□□□□ -0.75
TMEM39A-202ENST00000438581 CLSTN1O94985 981 aa10.37□□□□□ -0.75
TMEM39A-202ENST00000438581 ERBINQ96RT1 1412 aa10.36□□□□□ -0.75
TMEM39A-202ENST00000438581 MS4A1P11836 297 aa10.36□□□□□ -0.75
TMEM39A-202ENST00000438581 BCL2L13Q9BXK5 485 aa10.36□□□□□ -0.75
TMEM39A-202ENST00000438581 C11orf95C9JLR9 678 aaPredicted RBP10.36□□□□□ -0.75
TMEM39A-202ENST00000438581 NUTM2GQ5VZR2 741 aa10.36□□□□□ -0.75
TMEM39A-202ENST00000438581 ASXL2Q76L83 1435 aa10.35□□□□□ -0.75
TMEM39A-202ENST00000438581 PLIN1O60240 522 aa10.35□□□□□ -0.75
TMEM39A-202ENST00000438581 DISP1Q96F81 1524 aa10.35□□□□□ -0.75
TMEM39A-202ENST00000438581 NUP160Q12769 1436 aa10.35□□□□□ -0.75
TMEM39A-202ENST00000438581 RSPH6AQ9H0K4 717 aa10.35□□□□□ -0.75
TMEM39A-202ENST00000438581 SMC4Q9NTJ3 1288 aa10.35□□□□□ -0.75
TMEM39A-202ENST00000438581 ABCA5Q8WWZ7 1642 aa10.35□□□□□ -0.75
TMEM39A-202ENST00000438581 CEBPAP49715 358 aaPredicted RBP10.35□□□□□ -0.75
TMEM39A-202ENST00000438581 APBB1O00213 710 aa10.34□□□□□ -0.75
TMEM39A-202ENST00000438581 PDE3BQ13370 1112 aa10.34□□□□□ -0.75
TMEM39A-202ENST00000438581 IDI1Q13907 227 aa10.34□□□□□ -0.75
TMEM39A-202ENST00000438581 CCDC184Q52MB2 194 aa10.34□□□□□ -0.75
TMEM39A-202ENST00000438581 PSME1Q06323 249 aa10.34□□□□□ -0.75
TMEM39A-202ENST00000438581 MTHFSP49914 203 aa10.33□□□□□ -0.76
TMEM39A-202ENST00000438581 CALD1Q05682 793 aaKnown RBP10.33□□□□□ -0.76
TMEM39A-202ENST00000438581 ITPRIPQ8IWB1 547 aa10.33□□□□□ -0.76
TMEM39A-202ENST00000438581 PMFBP1Q8TBY8 1022 aa10.33□□□□□ -0.76
TMEM39A-202ENST00000438581 ZBED9Q6R2W3 1325 aa10.33□□□□□ -0.76
TMEM39A-202ENST00000438581 DIAPH1O60610 1272 aaKnown RBP10.33□□□□□ -0.76
TMEM39A-202ENST00000438581 PLCH2O75038 1416 aa10.33□□□□□ -0.76
TMEM39A-202ENST00000438581 IPO8O15397 1037 aaKnown RBP10.33□□□□□ -0.76
TMEM39A-202ENST00000438581 ZNF330Q9Y3S2 320 aaPredicted RBP10.33□□□□□ -0.76
TMEM39A-202ENST00000438581 THEMISQ8N1K5 641 aaPredicted RBP10.32□□□□□ -0.76
TMEM39A-202ENST00000438581 ADAMTS8Q9UP79 889 aa10.32□□□□□ -0.76
TMEM39A-202ENST00000438581 ADGRF5Q8IZF2 1346 aa10.32□□□□□ -0.76
TMEM39A-202ENST00000438581 PBRM1Q86U86 1689 aa10.32□□□□□ -0.76
TMEM39A-202ENST00000438581 HMOX1P09601 288 aa10.32□□□□□ -0.76
TMEM39A-202ENST00000438581 OS9Q13438 667 aaPredicted RBP10.32□□□□□ -0.76
TMEM39A-202ENST00000438581 CABP1Q9NZU7 370 aa10.31□□□□□ -0.76
TMEM39A-202ENST00000438581 DENND4BO75064 1496 aaPredicted RBP10.31□□□□□ -0.76
TMEM39A-202ENST00000438581 ANP32BQ92688 251 aaKnown RBP10.31□□□□□ -0.76
TMEM39A-202ENST00000438581 BCL11BQ9C0K0 894 aaPredicted RBP10.31□□□□□ -0.76
TMEM39A-202ENST00000438581 TARBP1Q13395 1621 aaKnown RBP10.31□□□□□ -0.76
TMEM39A-202ENST00000438581 CHMP4BQ9H444 224 aaKnown RBP10.31□□□□□ -0.76
TMEM39A-202ENST00000438581 CDK19Q9BWU1 502 aa10.3□□□□□ -0.76
TMEM39A-202ENST00000438581 TRAPPC8Q9Y2L5 1435 aa10.3□□□□□ -0.76
TMEM39A-202ENST00000438581 TCERG1O14776 1098 aaKnown RBP10.3□□□□□ -0.76
TMEM39A-202ENST00000438581 NLRP6P59044 892 aa10.3□□□□□ -0.76
TMEM39A-202ENST00000438581 DHX29Q7Z478 1369 aaKnown RBP10.3□□□□□ -0.76
TMEM39A-202ENST00000438581 PPP2R1AP30153 589 aa10.3□□□□□ -0.76
TMEM39A-202ENST00000438581 SYCP2Q9BX26 1530 aa10.29□□□□□ -0.76
TMEM39A-202ENST00000438581 WAPLQ7Z5K2 1190 aa10.29□□□□□ -0.76
TMEM39A-202ENST00000438581 AAMPQ13685 434 aa10.29□□□□□ -0.76
TMEM39A-202ENST00000438581 SLC4A10Q6U841 1118 aa10.29□□□□□ -0.76
TMEM39A-202ENST00000438581 RIPK4P57078 832 aa10.29□□□□□ -0.76
TMEM39A-202ENST00000438581 STK31Q9BXU1 1019 aa10.28□□□□□ -0.76
TMEM39A-202ENST00000438581 RPGRIP1LQ68CZ1 1315 aa10.28□□□□□ -0.76
TMEM39A-202ENST00000438581 RPRD2Q5VT52 1461 aaKnown RBP10.28□□□□□ -0.76
TMEM39A-202ENST00000438581 LMOD3Q0VAK6 560 aa10.28□□□□□ -0.76
TMEM39A-202ENST00000438581 PROSER2Q86WR7 435 aaPredicted RBP10.28□□□□□ -0.76
TMEM39A-202ENST00000438581 CDCA7LQ96GN5 454 aa10.28□□□□□ -0.76
TMEM39A-202ENST00000438581 WDR7Q9Y4E6 1490 aa10.27□□□□□ -0.76
TMEM39A-202ENST00000438581 E9PSI1 815 aa10.27□□□□□ -0.77
TMEM39A-202ENST00000438581 NPHP1O15259 732 aa10.27□□□□□ -0.77
TMEM39A-202ENST00000438581 ATF3P18847 181 aa10.27□□□□□ -0.77
TMEM39A-202ENST00000438581 EXOC6Q8TAG9 804 aa10.27□□□□□ -0.77
TMEM39A-202ENST00000438581 ESCO1Q5FWF5 840 aa10.27□□□□□ -0.77
TMEM39A-202ENST00000438581 CEP170Q5SW79 1584 aa10.26□□□□□ -0.77
TMEM39A-202ENST00000438581 PUS7Q96PZ0 661 aaKnown RBP10.26□□□□□ -0.77
TMEM39A-202ENST00000438581 PTMAP06454 111 aaKnown RBP10.26□□□□□ -0.77
TMEM39A-202ENST00000438581 RUNDC1Q96C34 613 aa10.26□□□□□ -0.77
TMEM39A-202ENST00000438581 RBM33Q96EV2 1170 aaKnown RBP10.26□□□□□ -0.77
TMEM39A-202ENST00000438581 BRD4O60885 1362 aaPredicted RBP10.25□□□□□ -0.77
TMEM39A-202ENST00000438581 SAMD1Q6SPF0 538 aaPredicted RBP10.25□□□□□ -0.77
TMEM39A-202ENST00000438581 ANKLE2Q86XL3 938 aa10.25□□□□□ -0.77
TMEM39A-202ENST00000438581 ABTB2Q8N961 1025 aa10.25□□□□□ -0.77
TMEM39A-202ENST00000438581 POGZQ7Z3K3 1410 aa10.25□□□□□ -0.77
TMEM39A-202ENST00000438581 BECN1Q14457 450 aa10.25□□□□□ -0.77
TMEM39A-202ENST00000438581 COG6Q9Y2V7 657 aa10.25□□□□□ -0.77
TMEM39A-202ENST00000438581 TCP11L2Q8N4U5 519 aa10.25□□□□□ -0.77
TMEM39A-202ENST00000438581 MAPKBP1O60336 1514 aa10.25□□□□□ -0.77
TMEM39A-202ENST00000438581 RRP1P56182 461 aaKnown RBP10.24□□□□□ -0.77
TMEM39A-202ENST00000438581 PNISRQ8TF01 805 aaKnown RBP10.24□□□□□ -0.77
TMEM39A-202ENST00000438581 NECTIN2Q92692 538 aa10.24□□□□□ -0.77
TMEM39A-202ENST00000438581 RWDD1Q9H446 243 aaPredicted RBP10.24□□□□□ -0.77
TMEM39A-202ENST00000438581 CFAP43Q8NDM7 1665 aa10.24□□□□□ -0.77
TMEM39A-202ENST00000438581 KDM5BQ9UGL1 1544 aa10.24□□□□□ -0.77
TMEM39A-202ENST00000438581 CRBNQ96SW2 442 aa10.24□□□□□ -0.77
TMEM39A-202ENST00000438581 DDRGK1Q96HY6 314 aa10.24□□□□□ -0.77
TMEM39A-202ENST00000438581 RBM19Q9Y4C8 960 aaKnown RBP10.24□□□□□ -0.77
TMEM39A-202ENST00000438581 TEFQ10587 303 aa10.23□□□□□ -0.77
TMEM39A-202ENST00000438581 CASC1Q6TDU7 716 aa10.23□□□□□ -0.77
TMEM39A-202ENST00000438581 ABCC2Q92887 1545 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms