RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 TSPY4P0CV99 314 aa13.75□□□□□ -0.21
USP54-204ENST00000422491 TSPY10P0CW01 314 aa13.75□□□□□ -0.21
USP54-204ENST00000422491 AMER1Q5JTC6 1135 aaPredicted RBP13.75□□□□□ -0.21
USP54-204ENST00000422491 PIK3C2GO75747 1445 aa13.75□□□□□ -0.21
USP54-204ENST00000422491 SYNJ2O15056 1496 aa13.75□□□□□ -0.21
USP54-204ENST00000422491 CCDC141Q6ZP82 1450 aa13.75□□□□□ -0.21
USP54-204ENST00000422491 CLCN1P35523 988 aa13.75□□□□□ -0.21
USP54-204ENST00000422491 NUP160Q12769 1436 aa13.75□□□□□ -0.21
USP54-204ENST00000422491 ARHGEF5Q12774 1597 aa13.75□□□□□ -0.21
USP54-204ENST00000422491 ABCC2Q92887 1545 aa13.74□□□□□ -0.21
USP54-204ENST00000422491 RNF17Q9BXT8 1623 aaKnown RBP13.74□□□□□ -0.21
USP54-204ENST00000422491 CGNL1Q0VF96 1302 aa13.74□□□□□ -0.21
USP54-204ENST00000422491 PDE3AQ14432 1141 aa13.73□□□□□ -0.21
USP54-204ENST00000422491 GLIPR1L2Q4G1C9 344 aa13.73□□□□□ -0.21
USP54-204ENST00000422491 KNSTRNQ9Y448 316 aa13.73□□□□□ -0.21
USP54-204ENST00000422491 GOLGA6L3A6NEY3 463 aa13.72□□□□□ -0.21
USP54-204ENST00000422491 CLUAP1Q96AJ1 413 aa13.72□□□□□ -0.21
USP54-204ENST00000422491 TBC1D32Q96NH3 1257 aa13.72□□□□□ -0.21
USP54-204ENST00000422491 TBC1D2Q9BYX2 928 aa13.72□□□□□ -0.21
USP54-204ENST00000422491 PNNQ9H307 717 aaKnown RBP13.71□□□□□ -0.21
USP54-204ENST00000422491 ZMYM3Q14202 1370 aa13.71□□□□□ -0.21
USP54-204ENST00000422491 NINLQ9Y2I6 1382 aa13.71□□□□□ -0.21
USP54-204ENST00000422491 E9PSI1 815 aa13.71□□□□□ -0.21
USP54-204ENST00000422491 PANK2Q9BZ23 570 aa13.71□□□□□ -0.21
USP54-204ENST00000422491 PLXNC1O60486 1568 aa13.71□□□□□ -0.21
USP54-204ENST00000422491 SYNMO15061 1565 aa13.71□□□□□ -0.22
USP54-204ENST00000422491 GRIN2AQ12879 1464 aa13.71□□□□□ -0.22
USP54-204ENST00000422491 CCDC146Q8IYE0 955 aa13.71□□□□□ -0.22
USP54-204ENST00000422491 UNC13BO14795 1591 aa13.7□□□□□ -0.22
USP54-204ENST00000422491 ASXL1Q8IXJ9 1541 aa13.7□□□□□ -0.22
USP54-204ENST00000422491 NAP1L5Q96NT1 182 aaPredicted RBP13.7□□□□□ -0.22
USP54-204ENST00000422491 MAGI1Q96QZ7 1491 aaPredicted RBP13.7□□□□□ -0.22
USP54-204ENST00000422491 APAF1O14727 1248 aa13.7□□□□□ -0.22
USP54-204ENST00000422491 MCM4P33991 863 aa13.69□□□□□ -0.22
USP54-204ENST00000422491 HNRNPMP52272 730 aaKnown RBP eCLIP13.69□□□□□ -0.22
USP54-204ENST00000422491 DMRT2Q9Y5R5 561 aa13.69□□□□□ -0.22
USP54-204ENST00000422491 NPC1L1Q9UHC9 1359 aa13.68□□□□□ -0.22
USP54-204ENST00000422491 ABCA8O94911 1581 aa13.68□□□□□ -0.22
USP54-204ENST00000422491 RRP9O43818 475 aaKnown RBP13.68□□□□□ -0.22
USP54-204ENST00000422491 ARXQ96QS3 562 aa13.68□□□□□ -0.22
USP54-204ENST00000422491 UPF2Q9HAU5 1272 aaKnown RBP13.68□□□□□ -0.22
USP54-204ENST00000422491 COG6Q9Y2V7 657 aa13.68□□□□□ -0.22
USP54-204ENST00000422491 IQGAP1P46940 1657 aa13.67□□□□□ -0.22
USP54-204ENST00000422491 PANK1Q8TE04 598 aa13.67□□□□□ -0.22
USP54-204ENST00000422491 PLEKHD1A6NEE1 506 aa13.66□□□□□ -0.22
USP54-204ENST00000422491 ATP10AO60312 1499 aa13.66□□□□□ -0.22
USP54-204ENST00000422491 MYOM1P52179 1685 aa13.66□□□□□ -0.22
USP54-204ENST00000422491 HSP90AA2PQ14568 343 aaPredicted RBP13.66□□□□□ -0.22
USP54-204ENST00000422491 CENPJQ9HC77 1338 aaPredicted RBP13.66□□□□□ -0.22
USP54-204ENST00000422491 HSP90AA1P07900 732 aaKnown RBP13.66□□□□□ -0.22
USP54-204ENST00000422491 ZMYND15Q9H091 742 aa13.66□□□□□ -0.22
USP54-204ENST00000422491 IQGAP3Q86VI3 1631 aa13.65□□□□□ -0.22
USP54-204ENST00000422491 GZF1Q9H116 711 aaPredicted RBP13.65□□□□□ -0.22
USP54-204ENST00000422491 SAMD9LQ8IVG5 1584 aa13.65□□□□□ -0.22
USP54-204ENST00000422491 MRE11P49959 708 aa13.65□□□□□ -0.22
USP54-204ENST00000422491 VSIG10Q8N0Z9 540 aa13.65□□□□□ -0.22
USP54-204ENST00000422491 NGEFQ8N5V2 710 aa13.65□□□□□ -0.22
USP54-204ENST00000422491 ATP10BO94823 1461 aa13.64□□□□□ -0.23
USP54-204ENST00000422491 PMFBP1Q8TBY8 1022 aa13.64□□□□□ -0.23
USP54-204ENST00000422491 RTEL1-TNFRSF6BF6WH68 1400 aa13.64□□□□□ -0.23
USP54-204ENST00000422491 TRAK2O60296 914 aa13.64□□□□□ -0.23
USP54-204ENST00000422491 PCDHB15Q9Y5E8 787 aa13.63□□□□□ -0.23
USP54-204ENST00000422491 AAMPQ13685 434 aa13.63□□□□□ -0.23
USP54-204ENST00000422491 IFT140Q96RY7 1462 aa13.63□□□□□ -0.23
USP54-204ENST00000422491 MADDQ8WXG6 1647 aa13.62□□□□□ -0.23
USP54-204ENST00000422491 CANXP27824 592 aaKnown RBP13.62□□□□□ -0.23
USP54-204ENST00000422491 CHMP5Q9NZZ3 219 aa13.62□□□□□ -0.23
USP54-204ENST00000422491 PDZRN3Q9UPQ7 1066 aa13.62□□□□□ -0.23
USP54-204ENST00000422491 MRC2Q9UBG0 1479 aa13.62□□□□□ -0.23
USP54-204ENST00000422491 CDCA8Q53HL2 280 aa13.61□□□□□ -0.23
USP54-204ENST00000422491 SPRYD3Q8NCJ5 442 aa13.61□□□□□ -0.23
USP54-204ENST00000422491 MAST1Q9Y2H9 1570 aa13.61□□□□□ -0.23
USP54-204ENST00000422491 WWC1Q8IX03 1113 aa13.6□□□□□ -0.23
USP54-204ENST00000422491 GRPEL1Q9HAV7 217 aa13.6□□□□□ -0.23
USP54-204ENST00000422491 CDC42BPBQ9Y5S2 1711 aa13.6□□□□□ -0.23
USP54-204ENST00000422491 ERBB4Q15303 1308 aa13.6□□□□□ -0.23
USP54-204ENST00000422491 ESPNB1AK53 854 aa13.6□□□□□ -0.23
USP54-204ENST00000422491 CARMIL2Q6F5E8 1435 aa13.6□□□□□ -0.23
USP54-204ENST00000422491 RSPH4AQ5TD94 716 aa13.6□□□□□ -0.23
USP54-204ENST00000422491 ISY1Q9ULR0 285 aaKnown RBP13.6□□□□□ -0.23
USP54-204ENST00000422491 PREX2Q70Z35 1606 aa13.59□□□□□ -0.23
USP54-204ENST00000422491 RLBP1P12271 317 aa13.59□□□□□ -0.23
USP54-204ENST00000422491 SCAF11Q99590 1463 aaKnown RBP13.59□□□□□ -0.23
USP54-204ENST00000422491 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.59□□□□□ -0.23
USP54-204ENST00000422491 SCAPERQ9BY12 1400 aa13.59□□□□□ -0.23
USP54-204ENST00000422491 MYH16Q9H6N6 1097 aa13.59□□□□□ -0.23
USP54-204ENST00000422491 RARSP54136 660 aaKnown RBP13.59□□□□□ -0.23
USP54-204ENST00000422491 ZNF692Q9BU19 519 aaPredicted RBP13.59□□□□□ -0.23
USP54-204ENST00000422491 TNNQ9UQP3 1299 aa13.57□□□□□ -0.24
USP54-204ENST00000422491 DDX11L8A8MPP1 907 aa13.57□□□□□ -0.24
USP54-204ENST00000422491 C22orf23Q9BZE7 217 aa13.57□□□□□ -0.24
USP54-204ENST00000422491 NCOA3Q9Y6Q9 1424 aa13.57□□□□□ -0.24
USP54-204ENST00000422491 SYCP2Q9BX26 1530 aa13.56□□□□□ -0.24
USP54-204ENST00000422491 KDM5AP29375 1690 aaKnown RBP13.56□□□□□ -0.24
USP54-204ENST00000422491 DDIT3P35638 169 aa13.56□□□□□ -0.24
USP54-204ENST00000422491 RWDD1Q9H446 243 aaPredicted RBP13.56□□□□□ -0.24
USP54-204ENST00000422491 CEP152O94986 1710 aa13.55□□□□□ -0.24
USP54-204ENST00000422491 SPHKAPQ2M3C7 1700 aa13.55□□□□□ -0.24
USP54-204ENST00000422491 DUOX2Q9NRD8 1548 aa13.54□□□□□ -0.24
USP54-204ENST00000422491 POLR3AO14802 1390 aaPredicted RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms