RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 KNSTRNQ9Y448 316 aa27.62■■■□□ 2.01
USP48-205ENST00000421625 SLFN5Q08AF3 891 aa27.61■■■□□ 2.01
USP48-205ENST00000421625 CCDC146Q8IYE0 955 aa27.59■■■□□ 2.01
USP48-205ENST00000421625 SPINK5Q9NQ38 1064 aaPredicted RBP27.59■■■□□ 2.01
USP48-205ENST00000421625 AMER1Q5JTC6 1135 aaPredicted RBP27.59■■■□□ 2.01
USP48-205ENST00000421625 UNC13BO14795 1591 aa27.58■■■□□ 2.01
USP48-205ENST00000421625 TTC37Q6PGP7 1564 aa27.58■■■□□ 2.01
USP48-205ENST00000421625 CDC42BPBQ9Y5S2 1711 aa27.57■■■□□ 2
USP48-205ENST00000421625 BCAR3O75815 825 aa27.56■■■□□ 2
USP48-205ENST00000421625 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.56■■■□□ 24e-9■■■□□ 14.6
USP48-205ENST00000421625 ARHGAP5Q13017 1502 aa27.55■■■□□ 2
USP48-205ENST00000421625 RNF17Q9BXT8 1623 aaKnown RBP27.54■■■□□ 2
USP48-205ENST00000421625 TRMT2AQ8IZ69 625 aaKnown RBP27.54■■■□□ 2
USP48-205ENST00000421625 USP19O94966 1318 aa27.53■■■□□ 2
USP48-205ENST00000421625 EIF3AQ14152 1382 aaKnown RBP27.53■■■□□ 2
USP48-205ENST00000421625 IGHDP01880 384 aa27.53■■■□□ 2
USP48-205ENST00000421625 SYCP2Q9BX26 1530 aa27.52■■■□□ 2
USP48-205ENST00000421625 PREX2Q70Z35 1606 aa27.52■■■□□ 2
USP48-205ENST00000421625 ZCCHC11Q5TAX3 1644 aaKnown RBP27.5■■□□□ 1.99
USP48-205ENST00000421625 IQGAP3Q86VI3 1631 aa27.5■■□□□ 1.99
USP48-205ENST00000421625 APAF1O14727 1248 aa27.49■■□□□ 1.99
USP48-205ENST00000421625 NKTRP30414 1462 aaKnown RBP27.49■■□□□ 1.99
USP48-205ENST00000421625 EIF5BO60841 1220 aaKnown RBP27.49■■□□□ 1.99
USP48-205ENST00000421625 RSPH4AQ5TD94 716 aa27.49■■□□□ 1.99
USP48-205ENST00000421625 SEC24BO95487 1268 aa27.48■■□□□ 1.99
USP48-205ENST00000421625 VIRMAQ69YN4 1812 aaKnown RBP27.48■■□□□ 1.99
USP48-205ENST00000421625 PIK3C2GO75747 1445 aa27.47■■□□□ 1.99
USP48-205ENST00000421625 DMRT2Q9Y5R5 561 aa27.46■■□□□ 1.99
USP48-205ENST00000421625 ASXL1Q8IXJ9 1541 aa27.46■■□□□ 1.99
USP48-205ENST00000421625 POGKQ9P215 609 aa27.46■■□□□ 1.99
USP48-205ENST00000421625 OSCARQ8IYS5 282 aa27.45■■□□□ 1.99
USP48-205ENST00000421625 SYNMO15061 1565 aa27.44■■□□□ 1.98
USP48-205ENST00000421625 FAM43AQ8N2R8 423 aa27.43■■□□□ 1.98
USP48-205ENST00000421625 ATP10AO60312 1499 aa27.43■■□□□ 1.98
USP48-205ENST00000421625 IQGAP1P46940 1657 aa27.43■■□□□ 1.98
USP48-205ENST00000421625 MAST1Q9Y2H9 1570 aa27.42■■□□□ 1.98
USP48-205ENST00000421625 UHRF1BP1LA0JNW5 1464 aa27.42■■□□□ 1.98
USP48-205ENST00000421625 SLKQ9H2G2 1235 aaPredicted RBP27.4■■□□□ 1.98
USP48-205ENST00000421625 E9PSI1 815 aa27.4■■□□□ 1.98
USP48-205ENST00000421625 MADDQ8WXG6 1647 aa27.39■■□□□ 1.98
USP48-205ENST00000421625 PANK1Q8TE04 598 aa27.38■■□□□ 1.97
USP48-205ENST00000421625 MYOM1P52179 1685 aa27.37■■□□□ 1.97
USP48-205ENST00000421625 EFCAB2Q5VUJ9 269 aa27.37■■□□□ 1.97
USP48-205ENST00000421625 COG6Q9Y2V7 657 aa27.37■■□□□ 1.97
USP48-205ENST00000421625 CDCA8Q53HL2 280 aa27.36■■□□□ 1.97
USP48-205ENST00000421625 CGNL1Q0VF96 1302 aa27.36■■□□□ 1.97
USP48-205ENST00000421625 CLUAP1Q96AJ1 413 aa27.36■■□□□ 1.97
USP48-205ENST00000421625 PLXNC1O60486 1568 aa27.35■■□□□ 1.97
USP48-205ENST00000421625 NLRP1Q9C000 1473 aa27.35■■□□□ 1.97
USP48-205ENST00000421625 PLCH2O75038 1416 aa27.35■■□□□ 1.97
USP48-205ENST00000421625 MAPK8IP3Q9UPT6 1336 aa27.34■■□□□ 1.97
USP48-205ENST00000421625 BECN1Q14457 450 aa27.34■■□□□ 1.97
USP48-205ENST00000421625 PDE3AQ14432 1141 aa27.33■■□□□ 1.97
USP48-205ENST00000421625 UBE2Q2Q8WVN8 375 aa27.33■■□□□ 1.97
USP48-205ENST00000421625 SCAF11Q99590 1463 aaKnown RBP27.33■■□□□ 1.97
USP48-205ENST00000421625 CANXP27824 592 aaKnown RBP27.33■■□□□ 1.97
USP48-205ENST00000421625 NPC1L1Q9UHC9 1359 aa27.32■■□□□ 1.96
USP48-205ENST00000421625 AFAP1Q8N556 730 aa27.32■■□□□ 1.96
USP48-205ENST00000421625 CENPJQ9HC77 1338 aaPredicted RBP27.32■■□□□ 1.96
USP48-205ENST00000421625 DUOX2Q9NRD8 1548 aa27.31■■□□□ 1.96
USP48-205ENST00000421625 RSPH6AQ9H0K4 717 aa27.3■■□□□ 1.96
USP48-205ENST00000421625 ANTXR1Q9H6X2 564 aa27.28■■□□□ 1.96
USP48-205ENST00000421625 TRAPPC8Q9Y2L5 1435 aa27.28■■□□□ 1.96
USP48-205ENST00000421625 RRAGDQ9NQL2 400 aaPredicted RBP27.25■■□□□ 1.95
USP48-205ENST00000421625 WWC1Q8IX03 1113 aa27.25■■□□□ 1.95
USP48-205ENST00000421625 SPHKAPQ2M3C7 1700 aa27.24■■□□□ 1.95
USP48-205ENST00000421625 NINLQ9Y2I6 1382 aa27.24■■□□□ 1.95
USP48-205ENST00000421625 SCAPERQ9BY12 1400 aa27.23■■□□□ 1.95
USP48-205ENST00000421625 TNNQ9UQP3 1299 aa27.23■■□□□ 1.95
USP48-205ENST00000421625 KDM5AP29375 1690 aaKnown RBP27.23■■□□□ 1.95
USP48-205ENST00000421625 CARD14Q9BXL6 1004 aa27.22■■□□□ 1.95
USP48-205ENST00000421625 ARXQ96QS3 562 aa27.22■■□□□ 1.95
USP48-205ENST00000421625 PCDHB15Q9Y5E8 787 aa27.22■■□□□ 1.95
USP48-205ENST00000421625 ASXL2Q76L83 1435 aa27.21■■□□□ 1.95
USP48-205ENST00000421625 TBC1D2Q9BYX2 928 aa27.21■■□□□ 1.95
USP48-205ENST00000421625 TBC1D32Q96NH3 1257 aa27.21■■□□□ 1.95
USP48-205ENST00000421625 NEUROD2Q15784 382 aa27.2■■□□□ 1.94
USP48-205ENST00000421625 CEP152O94986 1710 aa27.19■■□□□ 1.94
USP48-205ENST00000421625 NPM1P06748 294 aaKnown RBP eCLIP27.19■■□□□ 1.94
USP48-205ENST00000421625 RLBP1P12271 317 aa27.19■■□□□ 1.94
USP48-205ENST00000421625 L1TD1Q5T7N2 865 aaKnown RBP27.19■■□□□ 1.94
USP48-205ENST00000421625 SPAG9O60271 1321 aaKnown RBP27.18■■□□□ 1.94
USP48-205ENST00000421625 RRP7AQ9Y3A4 280 aaKnown RBP27.18■■□□□ 1.94
USP48-205ENST00000421625 NGEFQ8N5V2 710 aa27.17■■□□□ 1.94
USP48-205ENST00000421625 UPF2Q9HAU5 1272 aaKnown RBP27.17■■□□□ 1.94
USP48-205ENST00000421625 PDZRN3Q9UPQ7 1066 aa27.17■■□□□ 1.94
USP48-205ENST00000421625 RARSP54136 660 aaKnown RBP27.17■■□□□ 1.94
USP48-205ENST00000421625 SPRYD3Q8NCJ5 442 aa27.17■■□□□ 1.94
USP48-205ENST00000421625 PMFBP1Q8TBY8 1022 aa27.17■■□□□ 1.94
USP48-205ENST00000421625 ABCC1P33527 1531 aa27.16■■□□□ 1.94
USP48-205ENST00000421625 TRPM2O94759 1503 aa27.16■■□□□ 1.94
USP48-205ENST00000421625 BCL2L13Q9BXK5 485 aa27.16■■□□□ 1.94
USP48-205ENST00000421625 CLTCL1P53675 1640 aa27.15■■□□□ 1.94
USP48-205ENST00000421625 ERVK-7P63135 1459 aa27.15■■□□□ 1.94
USP48-205ENST00000421625 FANCAO15360 1455 aa27.13■■□□□ 1.93
USP48-205ENST00000421625 POLR3AO14802 1390 aaPredicted RBP27.11■■□□□ 1.93
USP48-205ENST00000421625 XRCC6P12956 609 aaKnown RBP eCLIP27.1■■□□□ 1.937e-11■■□□□ 12.1
USP48-205ENST00000421625 CFAP70Q5T0N1 1121 aa27.1■■□□□ 1.93
USP48-205ENST00000421625 GZF1Q9H116 711 aaPredicted RBP27.09■■□□□ 1.93
USP48-205ENST00000421625 TNNT2P45379 298 aaPredicted RBP27.09■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms