RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 PKD2Q13563 968 aa8.61□□□□□ -1.03
HMGB3-202ENST00000419110 TIMELESSQ9UNS1 1208 aa8.61□□□□□ -1.03
HMGB3-202ENST00000419110 MYO5BQ9ULV0 1848 aa8.6□□□□□ -1.03
HMGB3-202ENST00000419110 LAMC1P11047 1609 aa8.6□□□□□ -1.03
HMGB3-202ENST00000419110 TRPM1Q7Z4N2 1603 aa8.6□□□□□ -1.03
HMGB3-202ENST00000419110 PPLO60437 1756 aa8.6□□□□□ -1.03
HMGB3-202ENST00000419110 ADGRB3O60242 1522 aa8.59□□□□□ -1.03
HMGB3-202ENST00000419110 MADDQ8WXG6 1647 aa8.59□□□□□ -1.03
HMGB3-202ENST00000419110 KIF3BO15066 747 aa8.59□□□□□ -1.03
HMGB3-202ENST00000419110 SYNMO15061 1565 aa8.59□□□□□ -1.03
HMGB3-202ENST00000419110 KIAA1210Q9ULL0 1709 aa8.59□□□□□ -1.03
HMGB3-202ENST00000419110 COL17A1Q9UMD9 1497 aaPredicted RBP8.58□□□□□ -1.04
HMGB3-202ENST00000419110 CNTLNQ9NXG0 1405 aa8.58□□□□□ -1.04
HMGB3-202ENST00000419110 NEUROD1Q13562 356 aa8.58□□□□□ -1.04
HMGB3-202ENST00000419110 PTPRTO14522 1441 aa8.57□□□□□ -1.04
HMGB3-202ENST00000419110 NPATQ14207 1427 aa8.57□□□□□ -1.04
HMGB3-202ENST00000419110 SIN3AQ96ST3 1273 aa8.57□□□□□ -1.04
HMGB3-202ENST00000419110 RALGAPBQ86X10 1494 aa8.57□□□□□ -1.04
HMGB3-202ENST00000419110 UGGT1Q9NYU2 1555 aa8.56□□□□□ -1.04
HMGB3-202ENST00000419110 KDM5AP29375 1690 aaKnown RBP8.56□□□□□ -1.04
HMGB3-202ENST00000419110 ARHGAP31Q2M1Z3 1444 aa8.56□□□□□ -1.04
HMGB3-202ENST00000419110 PRR29P0C7W0 189 aa8.56□□□□□ -1.04
HMGB3-202ENST00000419110 PLA2R1Q13018 1463 aa8.56□□□□□ -1.04
HMGB3-202ENST00000419110 SPATA31D1Q6ZQQ2 1576 aa8.56□□□□□ -1.04
HMGB3-202ENST00000419110 C3P01024 1663 aa8.56□□□□□ -1.04
HMGB3-202ENST00000419110 EVX2Q03828 476 aa8.55□□□□□ -1.04
HMGB3-202ENST00000419110 ERVK-7P63135 1459 aa8.55□□□□□ -1.04
HMGB3-202ENST00000419110 RIMS1Q86UR5 1692 aaKnown RBP8.55□□□□□ -1.04
HMGB3-202ENST00000419110 IQGAP1P46940 1657 aa8.54□□□□□ -1.04
HMGB3-202ENST00000419110 MYOM2P54296 1465 aa8.54□□□□□ -1.04
HMGB3-202ENST00000419110 MYO3AQ8NEV4 1616 aa8.53□□□□□ -1.04
HMGB3-202ENST00000419110 NOS1P29475 1434 aa8.53□□□□□ -1.04
HMGB3-202ENST00000419110 UHRF1BP1Q6BDS2 1440 aa8.53□□□□□ -1.04
HMGB3-202ENST00000419110 SPATA31E1Q6ZUB1 1445 aa8.53□□□□□ -1.04
HMGB3-202ENST00000419110 TMEM131LA2VDJ0 1609 aa8.52□□□□□ -1.05
HMGB3-202ENST00000419110 WASHC2CQ9Y4E1 1318 aa8.52□□□□□ -1.05
HMGB3-202ENST00000419110 ZNF142P52746 1687 aaPredicted RBP8.51□□□□□ -1.05
HMGB3-202ENST00000419110 CHADLQ6NUI6 762 aa8.51□□□□□ -1.05
HMGB3-202ENST00000419110 GGT6Q6P531 493 aa8.51□□□□□ -1.05
HMGB3-202ENST00000419110 PRAG1Q86YV5 1406 aa8.51□□□□□ -1.05
HMGB3-202ENST00000419110 UBR1Q8IWV7 1749 aa8.5□□□□□ -1.05
HMGB3-202ENST00000419110 ADAMTSL3P82987 1691 aa8.49□□□□□ -1.05
HMGB3-202ENST00000419110 NEXMIFQ5QGS0 1516 aa8.49□□□□□ -1.05
HMGB3-202ENST00000419110 C19orf67A6NJJ6 358 aa8.48□□□□□ -1.05
HMGB3-202ENST00000419110 PPP1R15AO75807 674 aaPredicted RBP8.48□□□□□ -1.05
HMGB3-202ENST00000419110 L3MBTL2Q969R5 705 aa8.48□□□□□ -1.05
HMGB3-202ENST00000419110 SETBP1Q9Y6X0 1596 aa8.48□□□□□ -1.05
HMGB3-202ENST00000419110 ESF1Q9H501 851 aaKnown RBP8.47□□□□□ -1.05
HMGB3-202ENST00000419110 ARID4BQ4LE39 1312 aaPredicted RBP8.47□□□□□ -1.05
HMGB3-202ENST00000419110 ZNF316A6NFI3 1004 aaPredicted RBP8.46□□□□□ -1.06
HMGB3-202ENST00000419110 QRICH2Q9H0J4 1663 aa8.46□□□□□ -1.06
HMGB3-202ENST00000419110 SETD1AO15047 1707 aaKnown RBP8.46□□□□□ -1.06
HMGB3-202ENST00000419110 ARHGEF28Q8N1W1 1705 aaKnown RBP8.46□□□□□ -1.06
HMGB3-202ENST00000419110 NRXN1Q9ULB1 1477 aa8.45□□□□□ -1.06
HMGB3-202ENST00000419110 ZNF326Q5BKZ1 582 aaKnown RBP8.45□□□□□ -1.06
HMGB3-202ENST00000419110 ROCK2O75116 1388 aaKnown RBP8.45□□□□□ -1.06
HMGB3-202ENST00000419110 NLRP1Q9C000 1473 aa8.45□□□□□ -1.06
HMGB3-202ENST00000419110 KNDC1Q76NI1 1749 aa8.44□□□□□ -1.06
HMGB3-202ENST00000419110 USP47Q96K76 1375 aa8.44□□□□□ -1.06
HMGB3-202ENST00000419110 CEP170BQ9Y4F5 1589 aaPredicted RBP8.44□□□□□ -1.06
HMGB3-202ENST00000419110 SPDYE4A6NLX3 237 aa8.43□□□□□ -1.06
HMGB3-202ENST00000419110 MLECQ14165 292 aa8.43□□□□□ -1.06
HMGB3-202ENST00000419110 GPRASP1Q5JY77 1395 aa8.43□□□□□ -1.06
HMGB3-202ENST00000419110 TNRQ92752 1358 aa8.43□□□□□ -1.06
HMGB3-202ENST00000419110 PIK3C2GO75747 1445 aa8.43□□□□□ -1.06
HMGB3-202ENST00000419110 DCAF11Q8TEB1 546 aa8.42□□□□□ -1.06
HMGB3-202ENST00000419110 STAC3Q96MF2 364 aa8.42□□□□□ -1.06
HMGB3-202ENST00000419110 EIF3AQ14152 1382 aaKnown RBP8.42□□□□□ -1.06
HMGB3-202ENST00000419110 A2ML1A8K2U0 1454 aa8.41□□□□□ -1.06
HMGB3-202ENST00000419110 EIF4G2P78344 907 aaKnown RBP eCLIP8.41□□□□□ -1.06
HMGB3-202ENST00000419110 RGL3Q3MIN7 710 aa8.41□□□□□ -1.06
HMGB3-202ENST00000419110 SLC52A1Q9NWF4 448 aa8.41□□□□□ -1.06
HMGB3-202ENST00000419110 NRXN3Q9Y4C0 1643 aa8.4□□□□□ -1.06
HMGB3-202ENST00000419110 DIP2AQ14689 1571 aa8.4□□□□□ -1.06
HMGB3-202ENST00000419110 SCAF11Q99590 1463 aaKnown RBP8.4□□□□□ -1.06
HMGB3-202ENST00000419110 NBPF8Q3BBV2 869 aa8.4□□□□□ -1.06
HMGB3-202ENST00000419110 STAG3Q9UJ98 1225 aa8.4□□□□□ -1.06
HMGB3-202ENST00000419110 MYOM1P52179 1685 aa8.4□□□□□ -1.07
HMGB3-202ENST00000419110 ADGRB1O14514 1584 aa8.39□□□□□ -1.07
HMGB3-202ENST00000419110 ASXL1Q8IXJ9 1541 aa8.39□□□□□ -1.07
HMGB3-202ENST00000419110 ZFYVE9O95405 1425 aa8.39□□□□□ -1.07
HMGB3-202ENST00000419110 SETD1BQ9UPS6 1966 aaKnown RBP8.39□□□□□ -1.07
HMGB3-202ENST00000419110 ZMYM3Q14202 1370 aa8.39□□□□□ -1.07
HMGB3-202ENST00000419110 RPGRIP1LQ68CZ1 1315 aa8.39□□□□□ -1.07
HMGB3-202ENST00000419110 CHGAP10645 457 aaKnown RBP8.39□□□□□ -1.07
HMGB3-202ENST00000419110 KDM2AQ9Y2K7 1162 aa8.39□□□□□ -1.07
HMGB3-202ENST00000419110 FARP1Q9Y4F1 1045 aaPredicted RBP8.39□□□□□ -1.07
HMGB3-202ENST00000419110 SLIT1O75093 1534 aa8.38□□□□□ -1.07
HMGB3-202ENST00000419110 RIMS2Q9UQ26 1411 aa8.37□□□□□ -1.07
HMGB3-202ENST00000419110 CARD11Q9BXL7 1154 aa8.37□□□□□ -1.07
HMGB3-202ENST00000419110 ALKQ9UM73 1620 aa8.36□□□□□ -1.07
HMGB3-202ENST00000419110 CPS1P31327 1500 aa8.36□□□□□ -1.07
HMGB3-202ENST00000419110 GABBR2O75899 941 aa8.36□□□□□ -1.07
HMGB3-202ENST00000419110 HSPA5P11021 654 aaKnown RBP8.36□□□□□ -1.07
HMGB3-202ENST00000419110 DIEXFQ68CQ4 756 aaKnown RBP8.36□□□□□ -1.07
HMGB3-202ENST00000419110 CCDC7Q96M83 1385 aa8.35□□□□□ -1.07
HMGB3-202ENST00000419110 DLC1Q96QB1 1528 aa8.34□□□□□ -1.07
HMGB3-202ENST00000419110 ARHGAP23Q9P227 1491 aa8.34□□□□□ -1.07
HMGB3-202ENST00000419110 CD44P16070 742 aaKnown RBP8.34□□□□□ -1.07
HMGB3-202ENST00000419110 IDI1Q13907 227 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms