RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 CEP152O94986 1710 aa11.33□□□□□ -0.6
USP54-203ENST00000418501 PRKRIP1Q9H875 184 aaPredicted RBP11.33□□□□□ -0.6
USP54-203ENST00000418501 TSPOAP1O95153 1857 aa11.33□□□□□ -0.6
USP54-203ENST00000418501 NBPF1Q3BBV0 1214 aa11.32□□□□□ -0.6
USP54-203ENST00000418501 C14orf93Q9H972 538 aaKnown RBP11.32□□□□□ -0.6
USP54-203ENST00000418501 ARHGEF40Q8TER5 1519 aa11.32□□□□□ -0.6
USP54-203ENST00000418501 CLTCL1P53675 1640 aa11.32□□□□□ -0.6
USP54-203ENST00000418501 CAMSAP1Q5T5Y3 1602 aa11.32□□□□□ -0.6
USP54-203ENST00000418501 FRMPD1Q5SYB0 1578 aa11.32□□□□□ -0.6
USP54-203ENST00000418501 EVC2Q86UK5 1308 aa11.32□□□□□ -0.6
USP54-203ENST00000418501 PUS7Q96PZ0 661 aaKnown RBP11.31□□□□□ -0.6
USP54-203ENST00000418501 PPRC1Q5VV67 1664 aaKnown RBP11.31□□□□□ -0.6
USP54-203ENST00000418501 IDI1Q13907 227 aa11.31□□□□□ -0.6
USP54-203ENST00000418501 MROH1Q8NDA8 1641 aa11.31□□□□□ -0.6
USP54-203ENST00000418501 CFAP70Q5T0N1 1121 aa11.3□□□□□ -0.6
USP54-203ENST00000418501 ZFYVE9O95405 1425 aa11.3□□□□□ -0.6
USP54-203ENST00000418501 TRPM1Q7Z4N2 1603 aa11.3□□□□□ -0.6
USP54-203ENST00000418501 MYBBP1AQ9BQG0 1328 aaKnown RBP11.3□□□□□ -0.6
USP54-203ENST00000418501 ADGRB3O60242 1522 aa11.29□□□□□ -0.6
USP54-203ENST00000418501 TNRQ92752 1358 aa11.29□□□□□ -0.6
USP54-203ENST00000418501 NLRP13Q86W25 1043 aa11.28□□□□□ -0.6
USP54-203ENST00000418501 KIAA1210Q9ULL0 1709 aa11.28□□□□□ -0.6
USP54-203ENST00000418501 ADGRF5Q8IZF2 1346 aa11.28□□□□□ -0.6
USP54-203ENST00000418501 HNRNPUQ00839 825 aaKnown RBP eCLIP11.28□□□□□ -0.6
USP54-203ENST00000418501 ERVK-7P63135 1459 aa11.28□□□□□ -0.6
USP54-203ENST00000418501 ZMYM3Q14202 1370 aa11.27□□□□□ -0.61
USP54-203ENST00000418501 COL17A1Q9UMD9 1497 aaPredicted RBP11.27□□□□□ -0.61
USP54-203ENST00000418501 SBNO2Q9Y2G9 1366 aa11.27□□□□□ -0.61
USP54-203ENST00000418501 MADDQ8WXG6 1647 aa11.26□□□□□ -0.61
USP54-203ENST00000418501 TRAK1Q9UPV9 953 aa11.26□□□□□ -0.61
USP54-203ENST00000418501 BRD4O60885 1362 aaPredicted RBP11.26□□□□□ -0.61
USP54-203ENST00000418501 NINLQ9Y2I6 1382 aa11.26□□□□□ -0.61
USP54-203ENST00000418501 THEMISQ8N1K5 641 aaPredicted RBP11.26□□□□□ -0.61
USP54-203ENST00000418501 FAM9BQ8IZU0 186 aa11.26□□□□□ -0.61
USP54-203ENST00000418501 WDR43Q15061 677 aaKnown RBP eCLIP11.25□□□□□ -0.61
USP54-203ENST00000418501 PANK3Q9H999 370 aa11.25□□□□□ -0.61
USP54-203ENST00000418501 TERF2IPQ9NYB0 399 aa11.25□□□□□ -0.61
USP54-203ENST00000418501 CNGB1Q14028 1251 aaPredicted RBP11.25□□□□□ -0.61
USP54-203ENST00000418501 SETBP1Q9Y6X0 1596 aa11.25□□□□□ -0.61
USP54-203ENST00000418501 CFAP53Q96M91 514 aa11.24□□□□□ -0.61
USP54-203ENST00000418501 HDGFL2Q7Z4V5 671 aaPredicted RBP11.24□□□□□ -0.61
USP54-203ENST00000418501 C11orf95C9JLR9 678 aaPredicted RBP11.23□□□□□ -0.61
USP54-203ENST00000418501 POLR1AO95602 1720 aaPredicted RBP11.23□□□□□ -0.61
USP54-203ENST00000418501 PIK3C2GO75747 1445 aa11.23□□□□□ -0.61
USP54-203ENST00000418501 SRPK2P78362 688 aaKnown RBP11.23□□□□□ -0.61
USP54-203ENST00000418501 RIMS2Q9UQ26 1411 aa11.23□□□□□ -0.61
USP54-203ENST00000418501 FBXO31Q5XUX0 539 aaPredicted RBP11.23□□□□□ -0.61
USP54-203ENST00000418501 TESK2Q96S53 571 aa11.23□□□□□ -0.61
USP54-203ENST00000418501 ATAD2Q6PL18 1390 aa11.23□□□□□ -0.61
USP54-203ENST00000418501 NRXN1Q9ULB1 1477 aa11.23□□□□□ -0.61
USP54-203ENST00000418501 DNAJC5Q9H3Z4 198 aa11.22□□□□□ -0.61
USP54-203ENST00000418501 NLRP1Q9C000 1473 aa11.22□□□□□ -0.61
USP54-203ENST00000418501 CGNL1Q0VF96 1302 aa11.22□□□□□ -0.61
USP54-203ENST00000418501 STK26Q9P289 416 aa11.21□□□□□ -0.61
USP54-203ENST00000418501 GTF3C3Q9Y5Q9 886 aa11.21□□□□□ -0.62
USP54-203ENST00000418501 KIF13AQ9H1H9 1805 aa11.2□□□□□ -0.62
USP54-203ENST00000418501 NEFMP07197 916 aa11.2□□□□□ -0.62
USP54-203ENST00000418501 NGEFQ8N5V2 710 aa11.2□□□□□ -0.62
USP54-203ENST00000418501 UGGT1Q9NYU2 1555 aa11.2□□□□□ -0.62
USP54-203ENST00000418501 CC2D1BQ5T0F9 858 aaKnown RBP11.19□□□□□ -0.62
USP54-203ENST00000418501 NPC1L1Q9UHC9 1359 aa11.19□□□□□ -0.62
USP54-203ENST00000418501 PREX1Q8TCU6 1659 aa11.19□□□□□ -0.62
USP54-203ENST00000418501 SPATA31D1Q6ZQQ2 1576 aa11.19□□□□□ -0.62
USP54-203ENST00000418501 NUTM2DQ5VT03 806 aaPredicted RBP11.19□□□□□ -0.62
USP54-203ENST00000418501 MORC1Q86VD1 984 aa11.19□□□□□ -0.62
USP54-203ENST00000418501 SIRT1Q96EB6 747 aa11.19□□□□□ -0.62
USP54-203ENST00000418501 DISP3Q9P2K9 1392 aa11.19□□□□□ -0.62
USP54-203ENST00000418501 TMEM132EQ6IEE7 984 aa11.18□□□□□ -0.62
USP54-203ENST00000418501 PNNQ9H307 717 aaKnown RBP11.18□□□□□ -0.62
USP54-203ENST00000418501 NSD2O96028 1365 aa11.17□□□□□ -0.62
USP54-203ENST00000418501 TXNDC2Q86VQ3 553 aa11.17□□□□□ -0.62
USP54-203ENST00000418501 CLTCQ00610 1675 aaKnown RBP11.17□□□□□ -0.62
USP54-203ENST00000418501 SYNMO15061 1565 aa11.17□□□□□ -0.62
USP54-203ENST00000418501 PIK3C2BO00750 1634 aa11.17□□□□□ -0.62
USP54-203ENST00000418501 PLPPR3Q6T4P5 718 aa11.17□□□□□ -0.62
USP54-203ENST00000418501 PDE3BQ13370 1112 aa11.16□□□□□ -0.62
USP54-203ENST00000418501 NUDCQ9Y266 331 aa11.16□□□□□ -0.62
USP54-203ENST00000418501 LRPPRCP42704 1394 aaKnown RBP11.16□□□□□ -0.62
USP54-203ENST00000418501 ZBED9Q6R2W3 1325 aa11.16□□□□□ -0.62
USP54-203ENST00000418501 KDM5AP29375 1690 aaKnown RBP11.15□□□□□ -0.62
USP54-203ENST00000418501 YTHDC2Q9H6S0 1430 aaKnown RBP11.15□□□□□ -0.62
USP54-203ENST00000418501 NEXMIFQ5QGS0 1516 aa11.15□□□□□ -0.62
USP54-203ENST00000418501 IQGAP1P46940 1657 aa11.15□□□□□ -0.62
USP54-203ENST00000418501 INSRP06213 1382 aa11.15□□□□□ -0.62
USP54-203ENST00000418501 A2ML1A8K2U0 1454 aa11.14□□□□□ -0.63
USP54-203ENST00000418501 TMEM2Q9UHN6 1383 aa11.14□□□□□ -0.63
USP54-203ENST00000418501 PRAM1Q96QH2 718 aa11.14□□□□□ -0.63
USP54-203ENST00000418501 PPLO60437 1756 aa11.14□□□□□ -0.63
USP54-203ENST00000418501 ASXL1Q8IXJ9 1541 aa11.14□□□□□ -0.63
USP54-203ENST00000418501 ERICH6BQ5W0A0 696 aa11.14□□□□□ -0.63
USP54-203ENST00000418501 PARD3Q8TEW0 1356 aa11.14□□□□□ -0.63
USP54-203ENST00000418501 ABCC11Q96J66 1382 aa11.13□□□□□ -0.63
USP54-203ENST00000418501 ANKLE2Q86XL3 938 aa11.13□□□□□ -0.63
USP54-203ENST00000418501 MROH2AA6NES4 1674 aa11.13□□□□□ -0.63
USP54-203ENST00000418501 MINK1Q8N4C8 1332 aaPredicted RBP11.12□□□□□ -0.63
USP54-203ENST00000418501 SAFB2Q14151 953 aaKnown RBP eCLIP11.12□□□□□ -0.63
USP54-203ENST00000418501 CFAP65Q6ZU64 1925 aaKnown RBP11.11□□□□□ -0.63
USP54-203ENST00000418501 TMEM131LA2VDJ0 1609 aa11.11□□□□□ -0.63
USP54-203ENST00000418501 PLEKHG1Q9ULL1 1385 aa11.11□□□□□ -0.63
USP54-203ENST00000418501 IFT172Q9UG01 1749 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms