RNA–Protein interactions for RNA: ENST00000417285.6

VEGFA-208, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,081 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-208ENST00000417285 PPP1R15AO75807 674 aaPredicted RBP38.42■■■■□ 3.74
VEGFA-208ENST00000417285 ZFYVE9O95405 1425 aa38.39■■■■□ 3.74
VEGFA-208ENST00000417285 RIMS2Q9UQ26 1411 aa38.39■■■■□ 3.74
VEGFA-208ENST00000417285 PLEKHG1Q9ULL1 1385 aa38.38■■■■□ 3.73
VEGFA-208ENST00000417285 E9PCH4 1651 aa38.37■■■■□ 3.73
VEGFA-208ENST00000417285 ALKQ9UM73 1620 aa38.37■■■■□ 3.73
VEGFA-208ENST00000417285 PROSER2Q86WR7 435 aaPredicted RBP38.36■■■■□ 3.73
VEGFA-208ENST00000417285 TMEM131LA2VDJ0 1609 aa38.35■■■■□ 3.73
VEGFA-208ENST00000417285 ILDR2Q71H61 639 aa38.34■■■■□ 3.73
VEGFA-208ENST00000417285 TBX22Q9Y458 520 aa38.32■■■■□ 3.72
VEGFA-208ENST00000417285 TMEM94Q12767 1356 aa38.31■■■■□ 3.72
VEGFA-208ENST00000417285 NAIPQ13075 1403 aa38.25■■■■□ 3.71
VEGFA-208ENST00000417285 SENP3Q9H4L4 574 aaPredicted RBP38.25■■■■□ 3.71
VEGFA-208ENST00000417285 NKTRP30414 1462 aaKnown RBP38.23■■■■□ 3.71
VEGFA-208ENST00000417285 MYO5BQ9ULV0 1848 aa38.22■■■■□ 3.71
VEGFA-208ENST00000417285 NUTM2DQ5VT03 806 aaPredicted RBP38.21■■■■□ 3.71
VEGFA-208ENST00000417285 XIRP1Q702N8 1843 aaKnown RBP38.18■■■■□ 3.7
VEGFA-208ENST00000417285 RBM33Q96EV2 1170 aaKnown RBP38.18■■■■□ 3.7
VEGFA-208ENST00000417285 FAM135BQ49AJ0 1406 aa38.18■■■■□ 3.7
VEGFA-208ENST00000417285 NWD1Q149M9 1564 aa38.17■■■■□ 3.7
VEGFA-208ENST00000417285 SOCS7O14512 581 aa38.15■■■■□ 3.7
VEGFA-208ENST00000417285 PIK3R4Q99570 1358 aa38.14■■■■□ 3.7
VEGFA-208ENST00000417285 HFM1A2PYH4 1435 aa38.13■■■■□ 3.7
VEGFA-208ENST00000417285 TRIM52Q96A61 297 aa38.13■■■■□ 3.69
VEGFA-208ENST00000417285 MSH6P52701 1360 aa38.13■■■■□ 3.69
VEGFA-208ENST00000417285 ADAMTS13Q76LX8 1427 aa38.12■■■■□ 3.69
VEGFA-208ENST00000417285 ZNF326Q5BKZ1 582 aaKnown RBP38.12■■■■□ 3.69
VEGFA-208ENST00000417285 NCOA3Q9Y6Q9 1424 aa38.09■■■■□ 3.69
VEGFA-208ENST00000417285 CHD2O14647 1828 aaKnown RBP38.07■■■■□ 3.68
VEGFA-208ENST00000417285 DIP2AQ14689 1571 aa38.06■■■■□ 3.68
VEGFA-208ENST00000417285 SLAIN2Q9P270 581 aa38.06■■■■□ 3.68
VEGFA-208ENST00000417285 SPHKAPQ2M3C7 1700 aa38.05■■■■□ 3.68
VEGFA-208ENST00000417285 MED1Q15648 1581 aaPredicted RBP38.05■■■■□ 3.68
VEGFA-208ENST00000417285 SLC4A1APQ9BWU0 796 aaKnown RBP38.03■■■■□ 3.68
VEGFA-208ENST00000417285 C14orf37Q86TY3 774 aa38.01■■■■□ 3.68
VEGFA-208ENST00000417285 AMOTL2Q9Y2J4 779 aa38.01■■■■□ 3.68
VEGFA-208ENST00000417285 TRPM2O94759 1503 aa37.98■■■■□ 3.67
VEGFA-208ENST00000417285 PHF23Q9BUL5 403 aaPredicted RBP37.98■■■■□ 3.67
VEGFA-208ENST00000417285 C19orf44Q9H6X5 657 aa37.98■■■■□ 3.67
VEGFA-208ENST00000417285 CADPS2Q86UW7 1296 aa37.93■■■■□ 3.66
VEGFA-208ENST00000417285 ATF3P18847 181 aa37.91■■■■□ 3.66
VEGFA-208ENST00000417285 VGFO15240 615 aaPredicted RBP37.9■■■■□ 3.66
VEGFA-208ENST00000417285 CLTCL1P53675 1640 aa37.9■■■■□ 3.66
VEGFA-208ENST00000417285 SETBP1Q9Y6X0 1596 aa37.89■■■■□ 3.66
VEGFA-208ENST00000417285 PTPRUQ92729 1446 aa37.88■■■■□ 3.66
VEGFA-208ENST00000417285 ROBO1Q9Y6N7 1651 aa37.88■■■■□ 3.65
VEGFA-208ENST00000417285 RPGRIP1LQ68CZ1 1315 aa37.87■■■■□ 3.65
VEGFA-208ENST00000417285 ACIN1Q9UKV3 1341 aaKnown RBP37.86■■■■□ 3.65
VEGFA-208ENST00000417285 METP08581 1390 aa37.83■■■■□ 3.65
VEGFA-208ENST00000417285 NEXMIFQ5QGS0 1516 aa37.82■■■■□ 3.64
VEGFA-208ENST00000417285 KIF1BO60333 1816 aa37.8■■■■□ 3.64
VEGFA-208ENST00000417285 NRXN3Q9Y4C0 1643 aa37.79■■■■□ 3.64
VEGFA-208ENST00000417285 MPHOSPH9Q99550 1183 aa37.77■■■■□ 3.64
VEGFA-208ENST00000417285 FOXD1Q16676 465 aa37.74■■■■□ 3.63
VEGFA-208ENST00000417285 SIPA1L2Q9P2F8 1722 aaPredicted RBP37.73■■■■□ 3.63
VEGFA-208ENST00000417285 DCCP43146 1447 aa37.72■■■■□ 3.63
VEGFA-208ENST00000417285 JCADQ9P266 1359 aa37.7■■■■□ 3.63
VEGFA-208ENST00000417285 XRN1Q8IZH2 1706 aaKnown RBP37.7■■■■□ 3.63
VEGFA-208ENST00000417285 RGS17Q9UGC6 210 aaPredicted RBP37.67■■■■□ 3.62
VEGFA-208ENST00000417285 CCDC144AA2RUR9 1427 aa37.67■■■■□ 3.62
VEGFA-208ENST00000417285 BRINP3Q76B58 766 aa37.65■■■■□ 3.62
VEGFA-208ENST00000417285 PHLPP1O60346 1717 aa37.64■■■■□ 3.62
VEGFA-208ENST00000417285 SETD5Q9C0A6 1442 aa37.62■■■■□ 3.61
VEGFA-208ENST00000417285 RGL3Q3MIN7 710 aa37.59■■■■□ 3.61
VEGFA-208ENST00000417285 ADGRL3Q9HAR2 1447 aa37.59■■■■□ 3.61
VEGFA-208ENST00000417285 SPATA31A6Q5VVP1 1343 aa37.57■■■■□ 3.6
VEGFA-208ENST00000417285 MST1RQ04912 1400 aa37.55■■■■□ 3.6
VEGFA-208ENST00000417285 AHDC1Q5TGY3 1603 aaPredicted RBP37.55■■■■□ 3.6
VEGFA-208ENST00000417285 ANKRD30BQ9BXX2 1392 aa37.55■■■■□ 3.6
VEGFA-208ENST00000417285 COL16A1Q07092 1604 aaPredicted RBP37.54■■■■□ 3.6
VEGFA-208ENST00000417285 PTCH1Q13635 1447 aa37.54■■■■□ 3.6
VEGFA-208ENST00000417285 SPATA31E1Q6ZUB1 1445 aa37.53■■■■□ 3.6
VEGFA-208ENST00000417285 ADGRF5Q8IZF2 1346 aa37.52■■■■□ 3.6
VEGFA-208ENST00000417285 ROBO2Q9HCK4 1378 aa37.51■■■■□ 3.59
VEGFA-208ENST00000417285 PRAG1Q86YV5 1406 aa37.51■■■■□ 3.59
VEGFA-208ENST00000417285 PPLO60437 1756 aa37.5■■■■□ 3.59
VEGFA-208ENST00000417285 POTEAQ6S8J7 498 aa37.47■■■■□ 3.59
VEGFA-208ENST00000417285 LRRC59Q96AG4 307 aaKnown RBP37.46■■■■□ 3.59
VEGFA-208ENST00000417285 ASXL1Q8IXJ9 1541 aa37.46■■■■□ 3.59
VEGFA-208ENST00000417285 SETD1AO15047 1707 aaKnown RBP37.44■■■■□ 3.58
VEGFA-208ENST00000417285 RAB3GAP2Q9H2M9 1393 aa37.43■■■■□ 3.58
VEGFA-208ENST00000417285 MEX3CQ5U5Q3 659 aaKnown RBP37.42■■■■□ 3.58
VEGFA-208ENST00000417285 C1orf167Q5SNV9 1468 aa37.39■■■■□ 3.58
VEGFA-208ENST00000417285 NALCNQ8IZF0 1738 aa37.37■■■■□ 3.57
VEGFA-208ENST00000417285 HRCP23327 699 aa37.37■■■■□ 3.57
VEGFA-208ENST00000417285 STK26Q9P289 416 aa37.36■■■■□ 3.57
VEGFA-208ENST00000417285 LRPPRCP42704 1394 aaKnown RBP37.34■■■■□ 3.57
VEGFA-208ENST00000417285 SHPRHQ149N8 1683 aa37.34■■■■□ 3.57
VEGFA-208ENST00000417285 ABCC11Q96J66 1382 aa37.33■■■■□ 3.57
VEGFA-208ENST00000417285 ZNF772Q68DY9 489 aaPredicted RBP37.33■■■■□ 3.57
VEGFA-208ENST00000417285 DDX17Q92841 729 aaKnown RBP37.32■■■■□ 3.56
VEGFA-208ENST00000417285 PIK3C2GO75747 1445 aa37.32■■■■□ 3.56
VEGFA-208ENST00000417285 NUTM2BA6NNL0 878 aaPredicted RBP37.31■■■■□ 3.56
VEGFA-208ENST00000417285 NUTM2EB1AL46 878 aaPredicted RBP37.31■■■■□ 3.56
VEGFA-208ENST00000417285 TMEM132EQ6IEE7 984 aa37.31■■■■□ 3.56
VEGFA-208ENST00000417285 NUTM2AQ8IVF1 878 aaPredicted RBP37.31■■■■□ 3.56
VEGFA-208ENST00000417285 ORAI2Q96SN7 254 aa37.31■■■■□ 3.56
VEGFA-208ENST00000417285 C14orf93Q9H972 538 aaKnown RBP37.31■■■■□ 3.56
VEGFA-208ENST00000417285 LRP6O75581 1613 aa37.31■■■■□ 3.56
VEGFA-208ENST00000417285 NHSL1Q5SYE7 1610 aa37.29■■■■□ 3.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms