RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 TMEM94Q12767 1356 aa17.77■□□□□ 0.44
USP4-204ENST00000416417 KCNA6P17658 529 aa17.77■□□□□ 0.43
USP4-204ENST00000416417 PROSER2Q86WR7 435 aaPredicted RBP17.77■□□□□ 0.43
USP4-204ENST00000416417 MYO5BQ9ULV0 1848 aa17.76■□□□□ 0.43
USP4-204ENST00000416417 GCC2Q8IWJ2 1684 aa17.76■□□□□ 0.43
USP4-204ENST00000416417 ROCK1Q13464 1354 aa17.75■□□□□ 0.43
USP4-204ENST00000416417 RIMS2Q9UQ26 1411 aa17.74■□□□□ 0.43
USP4-204ENST00000416417 PPP1R15AO75807 674 aaPredicted RBP17.74■□□□□ 0.43
USP4-204ENST00000416417 E9PCH4 1651 aa17.74■□□□□ 0.43
USP4-204ENST00000416417 ZFYVE9O95405 1425 aa17.74■□□□□ 0.43
USP4-204ENST00000416417 NUP155O75694 1391 aa17.73■□□□□ 0.43
USP4-204ENST00000416417 TMEM131LA2VDJ0 1609 aa17.72■□□□□ 0.43
USP4-204ENST00000416417 PHF23Q9BUL5 403 aaPredicted RBP17.71■□□□□ 0.43
USP4-204ENST00000416417 PLEKHG1Q9ULL1 1385 aa17.7■□□□□ 0.42
USP4-204ENST00000416417 IQGAP3Q86VI3 1631 aa17.7■□□□□ 0.42
USP4-204ENST00000416417 NWD1Q149M9 1564 aa17.68■□□□□ 0.42
USP4-204ENST00000416417 NKTRP30414 1462 aaKnown RBP17.66■□□□□ 0.42
USP4-204ENST00000416417 FAM135BQ49AJ0 1406 aa17.65■□□□□ 0.42
USP4-204ENST00000416417 HDGFP51858 240 aaKnown RBP17.65■□□□□ 0.42
USP4-204ENST00000416417 ROBO1Q9Y6N7 1651 aa17.64■□□□□ 0.41
USP4-204ENST00000416417 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.64■□□□□ 0.41
USP4-204ENST00000416417 ADAMTS13Q76LX8 1427 aa17.64■□□□□ 0.41
USP4-204ENST00000416417 TBX22Q9Y458 520 aa17.63■□□□□ 0.41
USP4-204ENST00000416417 MSH6P52701 1360 aa17.63■□□□□ 0.41
USP4-204ENST00000416417 CHD2O14647 1828 aaKnown RBP17.62■□□□□ 0.41
USP4-204ENST00000416417 SLAIN2Q9P270 581 aa17.61■□□□□ 0.41
USP4-204ENST00000416417 RGS17Q9UGC6 210 aaPredicted RBP17.61■□□□□ 0.41
USP4-204ENST00000416417 C14orf37Q86TY3 774 aa17.6■□□□□ 0.41
USP4-204ENST00000416417 ZNF326Q5BKZ1 582 aaKnown RBP17.59■□□□□ 0.41
USP4-204ENST00000416417 RRBP1Q9P2E9 1410 aaKnown RBP17.59■□□□□ 0.41
USP4-204ENST00000416417 PTPRUQ92729 1446 aa17.58■□□□□ 0.4
USP4-204ENST00000416417 SPHKAPQ2M3C7 1700 aa17.57■□□□□ 0.4
USP4-204ENST00000416417 AMOTL2Q9Y2J4 779 aa17.57■□□□□ 0.4
USP4-204ENST00000416417 NAIPQ13075 1403 aa17.56■□□□□ 0.4
USP4-204ENST00000416417 DIP2AQ14689 1571 aa17.54■□□□□ 0.4
USP4-204ENST00000416417 CLTCL1P53675 1640 aa17.53■□□□□ 0.4
USP4-204ENST00000416417 TRIM52Q96A61 297 aa17.53■□□□□ 0.4
USP4-204ENST00000416417 PHLPP1O60346 1717 aa17.53■□□□□ 0.4
USP4-204ENST00000416417 TRPM2O94759 1503 aa17.53■□□□□ 0.4
USP4-204ENST00000416417 NRXN3Q9Y4C0 1643 aa17.52■□□□□ 0.4
USP4-204ENST00000416417 POTEAQ6S8J7 498 aa17.52■□□□□ 0.39
USP4-204ENST00000416417 METP08581 1390 aa17.51■□□□□ 0.39
USP4-204ENST00000416417 PIK3R4Q99570 1358 aa17.51■□□□□ 0.39
USP4-204ENST00000416417 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.51■□□□□ 0.39
USP4-204ENST00000416417 ATF3P18847 181 aa17.51■□□□□ 0.39
USP4-204ENST00000416417 C19orf44Q9H6X5 657 aa17.51■□□□□ 0.39
USP4-204ENST00000416417 NCOA3Q9Y6Q9 1424 aa17.49■□□□□ 0.39
USP4-204ENST00000416417 CADPS2Q86UW7 1296 aa17.48■□□□□ 0.39
USP4-204ENST00000416417 SETBP1Q9Y6X0 1596 aa17.48■□□□□ 0.39
USP4-204ENST00000416417 NEXMIFQ5QGS0 1516 aa17.48■□□□□ 0.39
USP4-204ENST00000416417 COL16A1Q07092 1604 aaPredicted RBP17.47■□□□□ 0.39
USP4-204ENST00000416417 JCADQ9P266 1359 aa17.47■□□□□ 0.39
USP4-204ENST00000416417 FOXD1Q16676 465 aa17.47■□□□□ 0.39
USP4-204ENST00000416417 XRN1Q8IZH2 1706 aaKnown RBP17.46■□□□□ 0.39
USP4-204ENST00000416417 HFM1A2PYH4 1435 aa17.45■□□□□ 0.38
USP4-204ENST00000416417 BRINP3Q76B58 766 aa17.45■□□□□ 0.38
USP4-204ENST00000416417 SLC4A1APQ9BWU0 796 aaKnown RBP17.45■□□□□ 0.38
USP4-204ENST00000416417 LRP6O75581 1613 aa17.42■□□□□ 0.38
USP4-204ENST00000416417 KIF1BO60333 1816 aa17.42■□□□□ 0.38
USP4-204ENST00000416417 DDX17Q92841 729 aaKnown RBP17.42■□□□□ 0.38
USP4-204ENST00000416417 AHDC1Q5TGY3 1603 aaPredicted RBP17.41■□□□□ 0.38
USP4-204ENST00000416417 MST1RQ04912 1400 aa17.4■□□□□ 0.38
USP4-204ENST00000416417 NUTM2BA6NNL0 878 aaPredicted RBP17.39■□□□□ 0.37
USP4-204ENST00000416417 NUTM2EB1AL46 878 aaPredicted RBP17.39■□□□□ 0.37
USP4-204ENST00000416417 MEX3CQ5U5Q3 659 aaKnown RBP17.39■□□□□ 0.37
USP4-204ENST00000416417 NUTM2AQ8IVF1 878 aaPredicted RBP17.39■□□□□ 0.37
USP4-204ENST00000416417 ASXL1Q8IXJ9 1541 aa17.38■□□□□ 0.37
USP4-204ENST00000416417 DCCP43146 1447 aa17.37■□□□□ 0.37
USP4-204ENST00000416417 VGFO15240 615 aaPredicted RBP17.37■□□□□ 0.37
USP4-204ENST00000416417 NALCNQ8IZF0 1738 aa17.36■□□□□ 0.37
USP4-204ENST00000416417 ADGRL3Q9HAR2 1447 aa17.36■□□□□ 0.37
USP4-204ENST00000416417 SPATA31A6Q5VVP1 1343 aa17.36■□□□□ 0.37
USP4-204ENST00000416417 ROBO2Q9HCK4 1378 aa17.36■□□□□ 0.37
USP4-204ENST00000416417 RGL3Q3MIN7 710 aa17.35■□□□□ 0.37
USP4-204ENST00000416417 SETD1AO15047 1707 aaKnown RBP17.34■□□□□ 0.37
USP4-204ENST00000416417 SHPRHQ149N8 1683 aa17.34■□□□□ 0.37
USP4-204ENST00000416417 RPGRIP1LQ68CZ1 1315 aa17.32■□□□□ 0.36
USP4-204ENST00000416417 ADGRF5Q8IZF2 1346 aa17.32■□□□□ 0.36
USP4-204ENST00000416417 MPHOSPH9Q99550 1183 aa17.31■□□□□ 0.36
USP4-204ENST00000416417 PPLO60437 1756 aa17.31■□□□□ 0.36
USP4-204ENST00000416417 NHSL1Q5SYE7 1610 aa17.31■□□□□ 0.36
USP4-204ENST00000416417 C1orf167Q5SNV9 1468 aa17.31■□□□□ 0.36
USP4-204ENST00000416417 ORAI2Q96SN7 254 aa17.31■□□□□ 0.36
USP4-204ENST00000416417 PTCH1Q13635 1447 aa17.3■□□□□ 0.36
USP4-204ENST00000416417 SETD5Q9C0A6 1442 aa17.3■□□□□ 0.36
USP4-204ENST00000416417 STK26Q9P289 416 aa17.29■□□□□ 0.36
USP4-204ENST00000416417 CCDC144AA2RUR9 1427 aa17.29■□□□□ 0.36
USP4-204ENST00000416417 LRRC59Q96AG4 307 aaKnown RBP17.28■□□□□ 0.36
USP4-204ENST00000416417 ZNF772Q68DY9 489 aaPredicted RBP17.27■□□□□ 0.36
USP4-204ENST00000416417 PNPLA6Q8IY17 1366 aa17.27■□□□□ 0.35
USP4-204ENST00000416417 AFF2P51816 1311 aa17.26■□□□□ 0.35
USP4-204ENST00000416417 SPATA31E1Q6ZUB1 1445 aa17.26■□□□□ 0.35
USP4-204ENST00000416417 TMEM132EQ6IEE7 984 aa17.26■□□□□ 0.35
USP4-204ENST00000416417 WAPLQ7Z5K2 1190 aa17.26■□□□□ 0.35
USP4-204ENST00000416417 C8orf37Q96NL8 207 aa17.26■□□□□ 0.35
USP4-204ENST00000416417 NUTM2FA1L443 756 aa17.24■□□□□ 0.35
USP4-204ENST00000416417 ADAMTS2O95450 1211 aa17.24■□□□□ 0.35
USP4-204ENST00000416417 RXRBP28702 533 aa17.22■□□□□ 0.35
USP4-204ENST00000416417 PLEKHH1Q9ULM0 1364 aa17.22■□□□□ 0.35
USP4-204ENST00000416417 XPCQ01831 940 aaPredicted RBP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms