RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 TET3O43151 1660 aa22.03■■□□□ 1.12
NIF3L1-205ENST00000409588 PIK3C2BO00750 1634 aa22.02■■□□□ 1.11
NIF3L1-205ENST00000409588 SYNMO15061 1565 aa21.99■■□□□ 1.11
NIF3L1-205ENST00000409588 GCC2Q8IWJ2 1684 aa21.98■■□□□ 1.11
NIF3L1-205ENST00000409588 IQGAP3Q86VI3 1631 aa21.96■■□□□ 1.11
NIF3L1-205ENST00000409588 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.96■■□□□ 1.11
NIF3L1-205ENST00000409588 NCBP3Q53F19 620 aaKnown RBP21.95■■□□□ 1.1
NIF3L1-205ENST00000409588 ADGRB3O60242 1522 aa21.95■■□□□ 1.1
NIF3L1-205ENST00000409588 KCNA6P17658 529 aa21.91■■□□□ 1.1
NIF3L1-205ENST00000409588 NAIPQ13075 1403 aa21.89■■□□□ 1.1
NIF3L1-205ENST00000409588 LRRC7Q96NW7 1537 aa21.89■■□□□ 1.09
NIF3L1-205ENST00000409588 E9PCH4 1651 aa21.88■■□□□ 1.09
NIF3L1-205ENST00000409588 ACIN1Q9UKV3 1341 aaKnown RBP21.88■■□□□ 1.09
NIF3L1-205ENST00000409588 PPP1R15AO75807 674 aaPredicted RBP21.88■■□□□ 1.09
NIF3L1-205ENST00000409588 BCANQ96GW7 911 aa21.88■■□□□ 1.09
NIF3L1-205ENST00000409588 CHGAP10645 457 aaKnown RBP21.87■■□□□ 1.09
NIF3L1-205ENST00000409588 HFM1A2PYH4 1435 aa21.87■■□□□ 1.09
NIF3L1-205ENST00000409588 ZFYVE9O95405 1425 aa21.87■■□□□ 1.09
NIF3L1-205ENST00000409588 PLEKHG1Q9ULL1 1385 aa21.87■■□□□ 1.09
NIF3L1-205ENST00000409588 SLC26A8Q96RN1 970 aa21.86■■□□□ 1.09
NIF3L1-205ENST00000409588 TBX22Q9Y458 520 aa21.86■■□□□ 1.09
NIF3L1-205ENST00000409588 TMEM131LA2VDJ0 1609 aa21.86■■□□□ 1.09
NIF3L1-205ENST00000409588 RIMS2Q9UQ26 1411 aa21.86■■□□□ 1.09
NIF3L1-205ENST00000409588 PIP4K2BP78356 416 aa21.83■■□□□ 1.09
NIF3L1-205ENST00000409588 STRCP1A6NGW2 1772 aa21.82■■□□□ 1.08
NIF3L1-205ENST00000409588 TRIM52Q96A61 297 aa21.81■■□□□ 1.08
NIF3L1-205ENST00000409588 PROSER2Q86WR7 435 aaPredicted RBP21.8■■□□□ 1.08
NIF3L1-205ENST00000409588 PIK3R4Q99570 1358 aa21.77■■□□□ 1.08
NIF3L1-205ENST00000409588 HSPA1LP34931 641 aa21.76■■□□□ 1.07
NIF3L1-205ENST00000409588 SLC4A1APQ9BWU0 796 aaKnown RBP21.76■■□□□ 1.07
NIF3L1-205ENST00000409588 NKTRP30414 1462 aaKnown RBP21.76■■□□□ 1.07
NIF3L1-205ENST00000409588 TMEM94Q12767 1356 aa21.74■■□□□ 1.07
NIF3L1-205ENST00000409588 NCOA3Q9Y6Q9 1424 aa21.74■■□□□ 1.07
NIF3L1-205ENST00000409588 ZNF326Q5BKZ1 582 aaKnown RBP21.74■■□□□ 1.07
NIF3L1-205ENST00000409588 DISP3Q9P2K9 1392 aa21.74■■□□□ 1.07
NIF3L1-205ENST00000409588 MYO5BQ9ULV0 1848 aa21.73■■□□□ 1.07
NIF3L1-205ENST00000409588 SPHKAPQ2M3C7 1700 aa21.73■■□□□ 1.07
NIF3L1-205ENST00000409588 DIP2AQ14689 1571 aa21.71■■□□□ 1.07
NIF3L1-205ENST00000409588 NWD1Q149M9 1564 aa21.7■■□□□ 1.06
NIF3L1-205ENST00000409588 TRPM2O94759 1503 aa21.7■■□□□ 1.06
NIF3L1-205ENST00000409588 ALKQ9UM73 1620 aa21.69■■□□□ 1.06
NIF3L1-205ENST00000409588 NUTM2DQ5VT03 806 aaPredicted RBP21.69■■□□□ 1.06
NIF3L1-205ENST00000409588 RPGRIP1LQ68CZ1 1315 aa21.69■■□□□ 1.06
NIF3L1-205ENST00000409588 FAM135BQ49AJ0 1406 aa21.69■■□□□ 1.06
NIF3L1-205ENST00000409588 ADAMTS13Q76LX8 1427 aa21.69■■□□□ 1.06
NIF3L1-205ENST00000409588 VGFO15240 615 aaPredicted RBP21.68■■□□□ 1.06
NIF3L1-205ENST00000409588 NPM3O75607 178 aaKnown RBP21.68■■□□□ 1.06
NIF3L1-205ENST00000409588 MSH6P52701 1360 aa21.68■■□□□ 1.06
NIF3L1-205ENST00000409588 CHD2O14647 1828 aaKnown RBP21.67■■□□□ 1.06
NIF3L1-205ENST00000409588 XIRP1Q702N8 1843 aaKnown RBP21.65■■□□□ 1.06
NIF3L1-205ENST00000409588 MPHOSPH9Q99550 1183 aa21.64■■□□□ 1.05
NIF3L1-205ENST00000409588 AMOTL2Q9Y2J4 779 aa21.64■■□□□ 1.05
NIF3L1-205ENST00000409588 C19orf44Q9H6X5 657 aa21.63■■□□□ 1.05
NIF3L1-205ENST00000409588 SLAIN2Q9P270 581 aa21.63■■□□□ 1.05
NIF3L1-205ENST00000409588 SETBP1Q9Y6X0 1596 aa21.61■■□□□ 1.05
NIF3L1-205ENST00000409588 CADPS2Q86UW7 1296 aa21.61■■□□□ 1.05
NIF3L1-205ENST00000409588 KIF1BO60333 1816 aa21.61■■□□□ 1.05
NIF3L1-205ENST00000409588 CLTCL1P53675 1640 aa21.61■■□□□ 1.05
NIF3L1-205ENST00000409588 C14orf37Q86TY3 774 aa21.6■■□□□ 1.05
NIF3L1-205ENST00000409588 RBM33Q96EV2 1170 aaKnown RBP21.6■■□□□ 1.05
NIF3L1-205ENST00000409588 SETD5Q9C0A6 1442 aa21.6■■□□□ 1.05
NIF3L1-205ENST00000409588 ATF3P18847 181 aa21.57■■□□□ 1.04
NIF3L1-205ENST00000409588 NEXMIFQ5QGS0 1516 aa21.56■■□□□ 1.04
NIF3L1-205ENST00000409588 CCDC144AA2RUR9 1427 aa21.55■■□□□ 1.04
NIF3L1-205ENST00000409588 HRCP23327 699 aa21.55■■□□□ 1.04
NIF3L1-205ENST00000409588 PTPRUQ92729 1446 aa21.53■■□□□ 1.04
NIF3L1-205ENST00000409588 METP08581 1390 aa21.52■■□□□ 1.04
NIF3L1-205ENST00000409588 NRXN3Q9Y4C0 1643 aa21.51■■□□□ 1.03
NIF3L1-205ENST00000409588 DCCP43146 1447 aa21.5■■□□□ 1.03
NIF3L1-205ENST00000409588 ILDR2Q71H61 639 aa21.5■■□□□ 1.03
NIF3L1-205ENST00000409588 ANKRD30BQ9BXX2 1392 aa21.49■■□□□ 1.03
NIF3L1-205ENST00000409588 ROBO1Q9Y6N7 1651 aa21.47■■□□□ 1.03
NIF3L1-205ENST00000409588 SOCS7O14512 581 aa21.47■■□□□ 1.03
NIF3L1-205ENST00000409588 MED1Q15648 1581 aaPredicted RBP21.47■■□□□ 1.03
NIF3L1-205ENST00000409588 RAB3GAP2Q9H2M9 1393 aa21.46■■□□□ 1.03
NIF3L1-205ENST00000409588 XRN1Q8IZH2 1706 aaKnown RBP21.46■■□□□ 1.03
NIF3L1-205ENST00000409588 RGL3Q3MIN7 710 aa21.45■■□□□ 1.02
NIF3L1-205ENST00000409588 SPATA31E1Q6ZUB1 1445 aa21.45■■□□□ 1.02
NIF3L1-205ENST00000409588 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.44■■□□□ 1.02
NIF3L1-205ENST00000409588 PRAG1Q86YV5 1406 aa21.42■■□□□ 1.02
NIF3L1-205ENST00000409588 PPLO60437 1756 aa21.41■■□□□ 1.02
NIF3L1-205ENST00000409588 PTCH1Q13635 1447 aa21.41■■□□□ 1.02
NIF3L1-205ENST00000409588 JCADQ9P266 1359 aa21.4■■□□□ 1.02
NIF3L1-205ENST00000409588 ADGRL3Q9HAR2 1447 aa21.39■■□□□ 1.02
NIF3L1-205ENST00000409588 STAC3Q96MF2 364 aa21.39■■□□□ 1.01
NIF3L1-205ENST00000409588 ADGRF5Q8IZF2 1346 aa21.38■■□□□ 1.01
NIF3L1-205ENST00000409588 BRINP3Q76B58 766 aa21.38■■□□□ 1.01
NIF3L1-205ENST00000409588 SPATA31A6Q5VVP1 1343 aa21.35■■□□□ 1.01
NIF3L1-205ENST00000409588 SIRT1Q96EB6 747 aa21.35■■□□□ 1.01
NIF3L1-205ENST00000409588 PHLPP1O60346 1717 aa21.35■■□□□ 1.01
NIF3L1-205ENST00000409588 MST1RQ04912 1400 aa21.34■■□□□ 1.01
NIF3L1-205ENST00000409588 ROBO2Q9HCK4 1378 aa21.34■■□□□ 1.01
NIF3L1-205ENST00000409588 SETD1AO15047 1707 aaKnown RBP21.33■■□□□ 1.01
NIF3L1-205ENST00000409588 C14orf93Q9H972 538 aaKnown RBP21.33■■□□□ 1.01
NIF3L1-205ENST00000409588 ABCC11Q96J66 1382 aa21.33■■□□□ 1
NIF3L1-205ENST00000409588 AHDC1Q5TGY3 1603 aaPredicted RBP21.33■■□□□ 1
NIF3L1-205ENST00000409588 LRRC59Q96AG4 307 aaKnown RBP21.32■■□□□ 1
NIF3L1-205ENST00000409588 PIK3C2GO75747 1445 aa21.31■■□□□ 1
NIF3L1-205ENST00000409588 LRPPRCP42704 1394 aaKnown RBP21.31■■□□□ 1
NIF3L1-205ENST00000409588 TECPR2O15040 1411 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms