RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 PPP6R1Q9UPN7 881 aa26.12■■□□□ 1.77
USP39-202ENST00000409025 SCAF11Q99590 1463 aaKnown RBP26.11■■□□□ 1.77
USP39-202ENST00000409025 NRXN1Q9ULB1 1477 aa26.11■■□□□ 1.77
USP39-202ENST00000409025 ADGRF5Q8IZF2 1346 aa26.11■■□□□ 1.77
USP39-202ENST00000409025 RPGRIP1LQ68CZ1 1315 aa26.11■■□□□ 1.77
USP39-202ENST00000409025 ARHGEF40Q8TER5 1519 aa26.1■■□□□ 1.77
USP39-202ENST00000409025 PPLO60437 1756 aa26.1■■□□□ 1.77
USP39-202ENST00000409025 TMF1P82094 1093 aa26.08■■□□□ 1.76
USP39-202ENST00000409025 GTF3C3Q9Y5Q9 886 aa26.08■■□□□ 1.76
USP39-202ENST00000409025 PREX1Q8TCU6 1659 aa26.08■■□□□ 1.76
USP39-202ENST00000409025 SLC52A1Q9NWF4 448 aa26.06■■□□□ 1.76
USP39-202ENST00000409025 CFAP70Q5T0N1 1121 aa26.06■■□□□ 1.76
USP39-202ENST00000409025 EIF3AQ14152 1382 aaKnown RBP26.05■■□□□ 1.76
USP39-202ENST00000409025 DISP3Q9P2K9 1392 aa26.05■■□□□ 1.76
USP39-202ENST00000409025 IDI1Q13907 227 aa26.01■■□□□ 1.75
USP39-202ENST00000409025 CLTCQ00610 1675 aaKnown RBP26■■□□□ 1.75
USP39-202ENST00000409025 PIK3C2GO75747 1445 aa26■■□□□ 1.75
USP39-202ENST00000409025 SETBP1Q9Y6X0 1596 aa25.99■■□□□ 1.75
USP39-202ENST00000409025 ERVK-7P63135 1459 aa25.98■■□□□ 1.75
USP39-202ENST00000409025 NEXMIFQ5QGS0 1516 aa25.97■■□□□ 1.75
USP39-202ENST00000409025 MRS2Q9HD23 443 aa25.96■■□□□ 1.75
USP39-202ENST00000409025 VGFO15240 615 aaPredicted RBP25.96■■□□□ 1.75
USP39-202ENST00000409025 CDCA8Q53HL2 280 aa25.96■■□□□ 1.75
USP39-202ENST00000409025 C14orf93Q9H972 538 aaKnown RBP25.96■■□□□ 1.75
USP39-202ENST00000409025 MLECQ14165 292 aa25.95■■□□□ 1.74
USP39-202ENST00000409025 CCDC184Q52MB2 194 aa25.95■■□□□ 1.74
USP39-202ENST00000409025 SLC24A1O60721 1099 aa25.94■■□□□ 1.74
USP39-202ENST00000409025 FBXO31Q5XUX0 539 aaPredicted RBP25.94■■□□□ 1.74
USP39-202ENST00000409025 TMEM131LA2VDJ0 1609 aa25.93■■□□□ 1.74
USP39-202ENST00000409025 KTN1Q86UP2 1357 aaKnown RBP25.93■■□□□ 1.74
USP39-202ENST00000409025 CNGB1Q14028 1251 aaPredicted RBP25.91■■□□□ 1.74
USP39-202ENST00000409025 MYO5BQ9ULV0 1848 aa25.91■■□□□ 1.74
USP39-202ENST00000409025 ZFYVE9O95405 1425 aa25.9■■□□□ 1.74
USP39-202ENST00000409025 MYO3AQ8NEV4 1616 aa25.89■■□□□ 1.74
USP39-202ENST00000409025 SPATA31D1Q6ZQQ2 1576 aa25.89■■□□□ 1.73
USP39-202ENST00000409025 RALBP1Q15311 655 aa25.88■■□□□ 1.73
USP39-202ENST00000409025 ESF1Q9H501 851 aaKnown RBP25.88■■□□□ 1.73
USP39-202ENST00000409025 ADGRB1O14514 1584 aa25.88■■□□□ 1.73
USP39-202ENST00000409025 PER1O15534 1290 aaPredicted RBP25.86■■□□□ 1.73
USP39-202ENST00000409025 NUTM2DQ5VT03 806 aaPredicted RBP25.86■■□□□ 1.73
USP39-202ENST00000409025 PANK3Q9H999 370 aa25.86■■□□□ 1.73
USP39-202ENST00000409025 TRHP20396 242 aaPredicted RBP25.84■■□□□ 1.73
USP39-202ENST00000409025 HNRNPUQ00839 825 aaKnown RBP eCLIP25.84■■□□□ 1.73
USP39-202ENST00000409025 KDM5AP29375 1690 aaKnown RBP25.84■■□□□ 1.73
USP39-202ENST00000409025 FAM9BQ8IZU0 186 aa25.84■■□□□ 1.73
USP39-202ENST00000409025 STAG3Q9UJ98 1225 aa25.84■■□□□ 1.73
USP39-202ENST00000409025 SBNO2Q9Y2G9 1366 aa25.83■■□□□ 1.73
USP39-202ENST00000409025 MYBBP1AQ9BQG0 1328 aaKnown RBP25.82■■□□□ 1.72
USP39-202ENST00000409025 CENPJQ9HC77 1338 aaPredicted RBP25.82■■□□□ 1.72
USP39-202ENST00000409025 TMEM132EQ6IEE7 984 aa25.81■■□□□ 1.72
USP39-202ENST00000409025 TRAK1Q9UPV9 953 aa25.81■■□□□ 1.72
USP39-202ENST00000409025 ZMYM3Q14202 1370 aa25.81■■□□□ 1.72
USP39-202ENST00000409025 PARD3Q8TEW0 1356 aa25.8■■□□□ 1.72
USP39-202ENST00000409025 MYOM1P52179 1685 aa25.77■■□□□ 1.72
USP39-202ENST00000409025 TMC1Q8TDI8 760 aa25.76■■□□□ 1.72
USP39-202ENST00000409025 BRD4O60885 1362 aaPredicted RBP25.76■■□□□ 1.71
USP39-202ENST00000409025 QRICH2Q9H0J4 1663 aa25.76■■□□□ 1.71
USP39-202ENST00000409025 A2ML1A8K2U0 1454 aa25.75■■□□□ 1.71
USP39-202ENST00000409025 KNSTRNQ9Y448 316 aa25.73■■□□□ 1.71
USP39-202ENST00000409025 ARHGEF28Q8N1W1 1705 aaKnown RBP25.72■■□□□ 1.71
USP39-202ENST00000409025 CC2D1BQ5T0F9 858 aaKnown RBP25.72■■□□□ 1.71
USP39-202ENST00000409025 NLRP13Q86W25 1043 aa25.71■■□□□ 1.71
USP39-202ENST00000409025 PNISRQ8TF01 805 aaKnown RBP25.69■■□□□ 1.7
USP39-202ENST00000409025 ASXL1Q8IXJ9 1541 aa25.69■■□□□ 1.7
USP39-202ENST00000409025 RIMS2Q9UQ26 1411 aa25.68■■□□□ 1.7
USP39-202ENST00000409025 TNRQ92752 1358 aa25.68■■□□□ 1.7
USP39-202ENST00000409025 ALKQ9UM73 1620 aa25.66■■□□□ 1.7
USP39-202ENST00000409025 ZBED9Q6R2W3 1325 aa25.65■■□□□ 1.7
USP39-202ENST00000409025 SENP3Q9H4L4 574 aaPredicted RBP25.64■■□□□ 1.69
USP39-202ENST00000409025 AMER1Q5JTC6 1135 aaPredicted RBP25.63■■□□□ 1.69
USP39-202ENST00000409025 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.63■■□□□ 1.69
USP39-202ENST00000409025 NPC1L1Q9UHC9 1359 aa25.62■■□□□ 1.69
USP39-202ENST00000409025 STK26Q9P289 416 aa25.62■■□□□ 1.69
USP39-202ENST00000409025 YTHDC2Q9H6S0 1430 aaKnown RBP25.62■■□□□ 1.69
USP39-202ENST00000409025 EVC2Q86UK5 1308 aa25.61■■□□□ 1.69
USP39-202ENST00000409025 PUS7Q96PZ0 661 aaKnown RBP25.61■■□□□ 1.69
USP39-202ENST00000409025 LRPPRCP42704 1394 aaKnown RBP25.6■■□□□ 1.69
USP39-202ENST00000409025 HDGFP51858 240 aaKnown RBP25.59■■□□□ 1.69
USP39-202ENST00000409025 PTPRMP28827 1452 aa25.57■■□□□ 1.68
USP39-202ENST00000409025 TULP4Q9NRJ4 1543 aa25.57■■□□□ 1.68
USP39-202ENST00000409025 UBR1Q8IWV7 1749 aa25.55■■□□□ 1.68
USP39-202ENST00000409025 FER1L4A9Z1Z3 1794 aa25.54■■□□□ 1.68
USP39-202ENST00000409025 SETD1AO15047 1707 aaKnown RBP25.54■■□□□ 1.68
USP39-202ENST00000409025 NLRP1Q9C000 1473 aa25.53■■□□□ 1.68
USP39-202ENST00000409025 SAFB2Q14151 953 aaKnown RBP eCLIP25.53■■□□□ 1.68
USP39-202ENST00000409025 CARD14Q9BXL6 1004 aa25.53■■□□□ 1.68
USP39-202ENST00000409025 POGKQ9P215 609 aa25.53■■□□□ 1.68
USP39-202ENST00000409025 PRAM1Q96QH2 718 aa25.53■■□□□ 1.68
USP39-202ENST00000409025 C3P01024 1663 aa25.52■■□□□ 1.68
USP39-202ENST00000409025 PPP2R1AP30153 589 aa25.51■■□□□ 1.67
USP39-202ENST00000409025 SLC12A5Q9H2X9 1139 aa25.51■■□□□ 1.67
USP39-202ENST00000409025 SUPT16HQ9Y5B9 1047 aaKnown RBP25.51■■□□□ 1.67
USP39-202ENST00000409025 DLC1Q96QB1 1528 aa25.51■■□□□ 1.67
USP39-202ENST00000409025 NRXN3Q9Y4C0 1643 aa25.51■■□□□ 1.67
USP39-202ENST00000409025 TMEM2Q9UHN6 1383 aa25.5■■□□□ 1.67
USP39-202ENST00000409025 CEBPAP49715 358 aaPredicted RBP25.5■■□□□ 1.67
USP39-202ENST00000409025 NEFLP07196 543 aa25.48■■□□□ 1.67
USP39-202ENST00000409025 CABP2Q9NPB3 220 aa25.47■■□□□ 1.67
USP39-202ENST00000409025 NSD3Q9BZ95 1437 aa25.46■■□□□ 1.67
USP39-202ENST00000409025 MINK1Q8N4C8 1332 aaPredicted RBP25.46■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms