RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 PTPN5P54829 565 aa11.01□□□□□ -0.65
HMGB1P13-201ENST00000406019 TSR3Q9UJK0 312 aaKnown RBP11.01□□□□□ -0.65
HMGB1P13-201ENST00000406019 HPS5Q9UPZ3 1129 aa11.01□□□□□ -0.65
HMGB1P13-201ENST00000406019 TMUB1Q9BVT8 246 aa10.99□□□□□ -0.65
HMGB1P13-201ENST00000406019 SLC10A3P09131 477 aa10.97□□□□□ -0.65
HMGB1P13-201ENST00000406019 SLF2Q8IX21 1173 aa10.97□□□□□ -0.65
HMGB1P13-201ENST00000406019 NYAP1Q6ZVC0 841 aa10.95□□□□□ -0.66
HMGB1P13-201ENST00000406019 DAXXQ9UER7 740 aaPredicted RBP10.95□□□□□ -0.66
HMGB1P13-201ENST00000406019 APLP1P51693 650 aa10.94□□□□□ -0.66
HMGB1P13-201ENST00000406019 AMHR2Q16671 573 aa10.93□□□□□ -0.66
HMGB1P13-201ENST00000406019 REPIN1Q9BWE0 567 aaKnown RBP10.93□□□□□ -0.66
HMGB1P13-201ENST00000406019 PPP4CP60510 307 aa10.92□□□□□ -0.66
HMGB1P13-201ENST00000406019 TRIM66O15016 1216 aa10.91□□□□□ -0.66
HMGB1P13-201ENST00000406019 HDGFP51858 240 aaKnown RBP10.91□□□□□ -0.66
HMGB1P13-201ENST00000406019 SLC24A3Q9HC58 644 aa10.91□□□□□ -0.66
HMGB1P13-201ENST00000406019 MDM2Q00987 491 aaPredicted RBP10.9□□□□□ -0.66
HMGB1P13-201ENST00000406019 KRI1Q8N9T8 703 aaKnown RBP10.9□□□□□ -0.66
HMGB1P13-201ENST00000406019 RNF40O75150 1001 aa10.89□□□□□ -0.67
HMGB1P13-201ENST00000406019 ITGBL1O95965 494 aaPredicted RBP10.89□□□□□ -0.67
HMGB1P13-201ENST00000406019 AK7Q96M32 723 aa10.89□□□□□ -0.67
HMGB1P13-201ENST00000406019 CFHP08603 1231 aa10.86□□□□□ -0.67
HMGB1P13-201ENST00000406019 TJAP1Q5JTD0 557 aa10.86□□□□□ -0.67
HMGB1P13-201ENST00000406019 NECTIN2Q92692 538 aa10.86□□□□□ -0.67
HMGB1P13-201ENST00000406019 GPCPD1Q9NPB8 672 aa10.86□□□□□ -0.67
HMGB1P13-201ENST00000406019 FAM217BQ9NTX9 383 aaPredicted RBP10.86□□□□□ -0.67
HMGB1P13-201ENST00000406019 CD46P15529 392 aa10.85□□□□□ -0.67
HMGB1P13-201ENST00000406019 CLCN1P35523 988 aa10.85□□□□□ -0.67
HMGB1P13-201ENST00000406019 IFFO2Q5TF58 517 aa10.85□□□□□ -0.67
HMGB1P13-201ENST00000406019 PARP9Q8IXQ6 854 aa10.85□□□□□ -0.67
HMGB1P13-201ENST00000406019 DDX11L8A8MPP1 907 aa10.84□□□□□ -0.67
HMGB1P13-201ENST00000406019 ACTN4O43707 911 aaKnown RBP10.84□□□□□ -0.67
HMGB1P13-201ENST00000406019 PRKCSHP14314 528 aaPredicted RBP10.84□□□□□ -0.67
HMGB1P13-201ENST00000406019 SLC4A3P48751 1232 aa10.83□□□□□ -0.68
HMGB1P13-201ENST00000406019 PLA2G2EQ9NZK7 142 aa10.83□□□□□ -0.68
HMGB1P13-201ENST00000406019 GCGRP47871 477 aa10.82□□□□□ -0.68
HMGB1P13-201ENST00000406019 SULF1Q8IWU6 871 aa10.82□□□□□ -0.68
HMGB1P13-201ENST00000406019 MTRQ99707 1265 aa10.82□□□□□ -0.68
HMGB1P13-201ENST00000406019 PDE4DQ08499 809 aa10.8□□□□□ -0.68
HMGB1P13-201ENST00000406019 GIGYF2Q6Y7W6 1299 aaKnown RBP10.8□□□□□ -0.68
HMGB1P13-201ENST00000406019 PRR14Q9BWN1 585 aa10.8□□□□□ -0.68
HMGB1P13-201ENST00000406019 RDH13Q8NBN7 331 aa10.79□□□□□ -0.68
HMGB1P13-201ENST00000406019 KMT5BQ4FZB7 885 aa10.78□□□□□ -0.68
HMGB1P13-201ENST00000406019 TPRNQ4KMQ1 711 aa10.77□□□□□ -0.69
HMGB1P13-201ENST00000406019 BLOC1S3Q6QNY0 202 aa10.77□□□□□ -0.69
HMGB1P13-201ENST00000406019 ZNF516Q92618 1163 aa10.77□□□□□ -0.69
HMGB1P13-201ENST00000406019 MS4A1P11836 297 aa10.76□□□□□ -0.69
HMGB1P13-201ENST00000406019 SSTR3P32745 418 aaPredicted RBP10.76□□□□□ -0.69
HMGB1P13-201ENST00000406019 TTLL12Q14166 644 aaPredicted RBP10.76□□□□□ -0.69
HMGB1P13-201ENST00000406019 IL21Q9HBE4 155 aa10.76□□□□□ -0.69
HMGB1P13-201ENST00000406019 PCDHB3Q9Y5E6 796 aa10.76□□□□□ -0.69
HMGB1P13-201ENST00000406019 FUT2Q10981 343 aa10.75□□□□□ -0.69
HMGB1P13-201ENST00000406019 RSPH4AQ5TD94 716 aa10.75□□□□□ -0.69
HMGB1P13-201ENST00000406019 COPS2P61201 443 aa10.74□□□□□ -0.69
HMGB1P13-201ENST00000406019 KCNC4Q03721 635 aa10.74□□□□□ -0.69
HMGB1P13-201ENST00000406019 MORN1Q5T089 497 aa10.74□□□□□ -0.69
HMGB1P13-201ENST00000406019 PUS10Q3MIT2 529 aaKnown RBP10.72□□□□□ -0.69
HMGB1P13-201ENST00000406019 A0A0G2JS52 829 aa10.71□□□□□ -0.69
HMGB1P13-201ENST00000406019 ZPR1O75312 459 aa10.71□□□□□ -0.69
HMGB1P13-201ENST00000406019 KDM4AO75164 1064 aa10.7□□□□□ -0.7
HMGB1P13-201ENST00000406019 ATP6V1AP38606 617 aa10.7□□□□□ -0.7
HMGB1P13-201ENST00000406019 NKX2-3Q8TAU0 364 aa10.7□□□□□ -0.7
HMGB1P13-201ENST00000406019 HLA-CQ95604 372 aa10.69□□□□□ -0.7
HMGB1P13-201ENST00000406019 THAP11Q96EK4 314 aa10.69□□□□□ -0.7
HMGB1P13-201ENST00000406019 HOXA2O43364 376 aa10.68□□□□□ -0.7
HMGB1P13-201ENST00000406019 TLL1O43897 1013 aa10.68□□□□□ -0.7
HMGB1P13-201ENST00000406019 GPBP1L1Q9HC44 474 aaPredicted RBP10.68□□□□□ -0.7
HMGB1P13-201ENST00000406019 USP46P62068 366 aa10.67□□□□□ -0.7
HMGB1P13-201ENST00000406019 SCUBE3Q8IX30 993 aa10.67□□□□□ -0.7
HMGB1P13-201ENST00000406019 SPIRE2Q8WWL2 714 aa10.67□□□□□ -0.7
HMGB1P13-201ENST00000406019 BEGAINQ9BUH8 593 aa10.67□□□□□ -0.7
HMGB1P13-201ENST00000406019 SLC27A5Q9Y2P5 690 aa10.67□□□□□ -0.7
HMGB1P13-201ENST00000406019 NR1I2O75469 434 aa10.66□□□□□ -0.7
HMGB1P13-201ENST00000406019 KDM4CQ9H3R0 1056 aa10.64□□□□□ -0.71
HMGB1P13-201ENST00000406019 SALL2Q9Y467 1007 aaPredicted RBP10.64□□□□□ -0.71
HMGB1P13-201ENST00000406019 BRICD5Q6PL45 260 aa10.63□□□□□ -0.71
HMGB1P13-201ENST00000406019 ADH1BP00325 375 aa10.62□□□□□ -0.71
HMGB1P13-201ENST00000406019 GUCA2AQ02747 115 aa10.62□□□□□ -0.71
HMGB1P13-201ENST00000406019 RNF19BQ6ZMZ0 732 aa10.62□□□□□ -0.71
HMGB1P13-201ENST00000406019 TBC1D2Q9BYX2 928 aa10.62□□□□□ -0.71
HMGB1P13-201ENST00000406019 PCDHGC3Q9UN70 934 aa10.62□□□□□ -0.71
HMGB1P13-201ENST00000406019 BRPF1P55201 1214 aaPredicted RBP10.61□□□□□ -0.71
HMGB1P13-201ENST00000406019 MOXD2PA6NHM9 499 aa10.6□□□□□ -0.71
HMGB1P13-201ENST00000406019 NUTM1Q86Y26 1132 aa10.6□□□□□ -0.71
HMGB1P13-201ENST00000406019 FAM160A2Q8N612 972 aaPredicted RBP10.6□□□□□ -0.71
HMGB1P13-201ENST00000406019 PLEKHG3A1L390 1219 aa10.59□□□□□ -0.71
HMGB1P13-201ENST00000406019 GRIPAP1Q4V328 841 aa10.59□□□□□ -0.71
HMGB1P13-201ENST00000406019 PPP1R18Q6NYC8 613 aa10.59□□□□□ -0.71
HMGB1P13-201ENST00000406019 FAM117AQ9C073 453 aa10.59□□□□□ -0.71
HMGB1P13-201ENST00000406019 NDUFV2P19404 249 aa10.58□□□□□ -0.72
HMGB1P13-201ENST00000406019 GJA5P36382 358 aa10.58□□□□□ -0.72
HMGB1P13-201ENST00000406019 MYSM1Q5VVJ2 828 aa10.57□□□□□ -0.72
HMGB1P13-201ENST00000406019 RSBN1LQ6PCB5 846 aaPredicted RBP10.57□□□□□ -0.72
HMGB1P13-201ENST00000406019 SPSB2Q99619 263 aa10.57□□□□□ -0.72
HMGB1P13-201ENST00000406019 SPTLC1O15269 473 aa10.56□□□□□ -0.72
HMGB1P13-201ENST00000406019 FMNL1O95466 1100 aaPredicted RBP10.56□□□□□ -0.72
HMGB1P13-201ENST00000406019 S1PR4O95977 384 aa10.56□□□□□ -0.72
HMGB1P13-201ENST00000406019 FDX1P10109 184 aa10.55□□□□□ -0.72
HMGB1P13-201ENST00000406019 MSS51Q4VC12 460 aa10.55□□□□□ -0.72
HMGB1P13-201ENST00000406019 EMID1Q96A84 441 aaPredicted RBP10.55□□□□□ -0.72
HMGB1P13-201ENST00000406019 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms