RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 SLC26A8Q96RN1 970 aa20.43■□□□□ 0.86
VCX3A-202ENST00000398729 KDM5AP29375 1690 aaKnown RBP20.42■□□□□ 0.86
VCX3A-202ENST00000398729 RRBP1Q9P2E9 1410 aaKnown RBP20.42■□□□□ 0.86
VCX3A-202ENST00000398729 SLC52A1Q9NWF4 448 aa20.41■□□□□ 0.86
VCX3A-202ENST00000398729 GCC2Q8IWJ2 1684 aa20.41■□□□□ 0.86
VCX3A-202ENST00000398729 PROSER2Q86WR7 435 aaPredicted RBP20.4■□□□□ 0.86
VCX3A-202ENST00000398729 IQGAP3Q86VI3 1631 aa20.38■□□□□ 0.85
VCX3A-202ENST00000398729 NUP155O75694 1391 aa20.36■□□□□ 0.85
VCX3A-202ENST00000398729 ADGRB3O60242 1522 aa20.36■□□□□ 0.85
VCX3A-202ENST00000398729 E9PCH4 1651 aa20.35■□□□□ 0.85
VCX3A-202ENST00000398729 SLAIN2Q9P270 581 aa20.33■□□□□ 0.85
VCX3A-202ENST00000398729 ROBO1Q9Y6N7 1651 aa20.31■□□□□ 0.84
VCX3A-202ENST00000398729 TMEM131LA2VDJ0 1609 aa20.27■□□□□ 0.84
VCX3A-202ENST00000398729 MYO5BQ9ULV0 1848 aa20.27■□□□□ 0.84
VCX3A-202ENST00000398729 HDGFP51858 240 aaKnown RBP20.27■□□□□ 0.84
VCX3A-202ENST00000398729 BCANQ96GW7 911 aa20.27■□□□□ 0.84
VCX3A-202ENST00000398729 NAIPQ13075 1403 aa20.27■□□□□ 0.83
VCX3A-202ENST00000398729 CHGAP10645 457 aaKnown RBP20.26■□□□□ 0.83
VCX3A-202ENST00000398729 NKTRP30414 1462 aaKnown RBP20.24■□□□□ 0.83
VCX3A-202ENST00000398729 MSH6P52701 1360 aa20.24■□□□□ 0.83
VCX3A-202ENST00000398729 NWD1Q149M9 1564 aa20.24■□□□□ 0.83
VCX3A-202ENST00000398729 PPP1R15AO75807 674 aaPredicted RBP20.23■□□□□ 0.83
VCX3A-202ENST00000398729 ZFYVE9O95405 1425 aa20.23■□□□□ 0.83
VCX3A-202ENST00000398729 RIMS2Q9UQ26 1411 aa20.23■□□□□ 0.83
VCX3A-202ENST00000398729 JCADQ9P266 1359 aa20.22■□□□□ 0.83
VCX3A-202ENST00000398729 HFM1A2PYH4 1435 aa20.22■□□□□ 0.83
VCX3A-202ENST00000398729 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.21■□□□□ 0.83
VCX3A-202ENST00000398729 TBX22Q9Y458 520 aa20.21■□□□□ 0.83
VCX3A-202ENST00000398729 SPHKAPQ2M3C7 1700 aa20.21■□□□□ 0.83
VCX3A-202ENST00000398729 PLEKHG1Q9ULL1 1385 aa20.21■□□□□ 0.83
VCX3A-202ENST00000398729 CHD2O14647 1828 aaKnown RBP20.19■□□□□ 0.82
VCX3A-202ENST00000398729 PHLPP1O60346 1717 aa20.17■□□□□ 0.82
VCX3A-202ENST00000398729 TRIM52Q96A61 297 aa20.17■□□□□ 0.82
VCX3A-202ENST00000398729 NUTM2DQ5VT03 806 aaPredicted RBP20.16■□□□□ 0.82
VCX3A-202ENST00000398729 NCOA3Q9Y6Q9 1424 aa20.14■□□□□ 0.81
VCX3A-202ENST00000398729 C19orf44Q9H6X5 657 aa20.14■□□□□ 0.81
VCX3A-202ENST00000398729 SETD1AO15047 1707 aaKnown RBP20.13■□□□□ 0.81
VCX3A-202ENST00000398729 LRP6O75581 1613 aa20.13■□□□□ 0.81
VCX3A-202ENST00000398729 COL16A1Q07092 1604 aaPredicted RBP20.13■□□□□ 0.81
VCX3A-202ENST00000398729 ADAMTS13Q76LX8 1427 aa20.13■□□□□ 0.81
VCX3A-202ENST00000398729 SPATA31A6Q5VVP1 1343 aa20.12■□□□□ 0.81
VCX3A-202ENST00000398729 UPF1Q92900 1129 aaKnown RBP eCLIP20.12■□□□□ 0.81
VCX3A-202ENST00000398729 TRPM2O94759 1503 aa20.12■□□□□ 0.81
VCX3A-202ENST00000398729 ZNF326Q5BKZ1 582 aaKnown RBP20.1■□□□□ 0.81
VCX3A-202ENST00000398729 C14orf37Q86TY3 774 aa20.1■□□□□ 0.81
VCX3A-202ENST00000398729 CADPS2Q86UW7 1296 aa20.1■□□□□ 0.81
VCX3A-202ENST00000398729 SLC4A1APQ9BWU0 796 aaKnown RBP20.1■□□□□ 0.81
VCX3A-202ENST00000398729 DIP2AQ14689 1571 aa20.09■□□□□ 0.81
VCX3A-202ENST00000398729 ZNF772Q68DY9 489 aaPredicted RBP20.09■□□□□ 0.81
VCX3A-202ENST00000398729 CLTCL1P53675 1640 aa20.09■□□□□ 0.81
VCX3A-202ENST00000398729 ATF3P18847 181 aa20.08■□□□□ 0.81
VCX3A-202ENST00000398729 AMOTL2Q9Y2J4 779 aa20.08■□□□□ 0.81
VCX3A-202ENST00000398729 MEX3CQ5U5Q3 659 aaKnown RBP20.07■□□□□ 0.8
VCX3A-202ENST00000398729 BRINP3Q76B58 766 aa20.07■□□□□ 0.8
VCX3A-202ENST00000398729 KIF1BO60333 1816 aa20.06■□□□□ 0.8
VCX3A-202ENST00000398729 PTPRUQ92729 1446 aa20.06■□□□□ 0.8
VCX3A-202ENST00000398729 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.06■□□□□ 0.8
VCX3A-202ENST00000398729 PIK3R4Q99570 1358 aa20.06■□□□□ 0.8
VCX3A-202ENST00000398729 AHDC1Q5TGY3 1603 aaPredicted RBP20.04■□□□□ 0.8
VCX3A-202ENST00000398729 RXRBP28702 533 aa20.03■□□□□ 0.8
VCX3A-202ENST00000398729 SRCAPQ6ZRS2 3230 aa20.01■□□□□ 0.79
VCX3A-202ENST00000398729 SETBP1Q9Y6X0 1596 aa20.01■□□□□ 0.79
VCX3A-202ENST00000398729 NUTM2BA6NNL0 878 aaPredicted RBP20.01■□□□□ 0.79
VCX3A-202ENST00000398729 NUTM2EB1AL46 878 aaPredicted RBP20.01■□□□□ 0.79
VCX3A-202ENST00000398729 NUTM2AQ8IVF1 878 aaPredicted RBP20.01■□□□□ 0.79
VCX3A-202ENST00000398729 NEXMIFQ5QGS0 1516 aa20.01■□□□□ 0.79
VCX3A-202ENST00000398729 ACIN1Q9UKV3 1341 aaKnown RBP20■□□□□ 0.79
VCX3A-202ENST00000398729 NRXN3Q9Y4C0 1643 aa19.99■□□□□ 0.79
VCX3A-202ENST00000398729 SHPRHQ149N8 1683 aa19.99■□□□□ 0.79
VCX3A-202ENST00000398729 FOXD1Q16676 465 aa19.97■□□□□ 0.79
VCX3A-202ENST00000398729 MPHOSPH9Q99550 1183 aa19.97■□□□□ 0.79
VCX3A-202ENST00000398729 SETD5Q9C0A6 1442 aa19.96■□□□□ 0.79
VCX3A-202ENST00000398729 AFF2P51816 1311 aa19.96■□□□□ 0.79
VCX3A-202ENST00000398729 VGFO15240 615 aaPredicted RBP19.95■□□□□ 0.78
VCX3A-202ENST00000398729 DDX17Q92841 729 aaKnown RBP19.95■□□□□ 0.78
VCX3A-202ENST00000398729 RPGRIP1LQ68CZ1 1315 aa19.95■□□□□ 0.78
VCX3A-202ENST00000398729 METP08581 1390 aa19.94■□□□□ 0.78
VCX3A-202ENST00000398729 MST1RQ04912 1400 aa19.93■□□□□ 0.78
VCX3A-202ENST00000398729 LRRC59Q96AG4 307 aaKnown RBP19.93■□□□□ 0.78
VCX3A-202ENST00000398729 XRN1Q8IZH2 1706 aaKnown RBP19.93■□□□□ 0.78
VCX3A-202ENST00000398729 CCDC144AA2RUR9 1427 aa19.93■□□□□ 0.78
VCX3A-202ENST00000398729 DCCP43146 1447 aa19.93■□□□□ 0.78
VCX3A-202ENST00000398729 QTRT2Q9H974 415 aaKnown RBP19.92■□□□□ 0.78
VCX3A-202ENST00000398729 CDK12Q9NYV4 1490 aaPredicted RBP19.92■□□□□ 0.78
VCX3A-202ENST00000398729 ASXL1Q8IXJ9 1541 aa19.92■□□□□ 0.78
VCX3A-202ENST00000398729 PPLO60437 1756 aa19.9■□□□□ 0.78
VCX3A-202ENST00000398729 RAB3GAP2Q9H2M9 1393 aa19.88■□□□□ 0.77
VCX3A-202ENST00000398729 C8orf37Q96NL8 207 aa19.88■□□□□ 0.77
VCX3A-202ENST00000398729 RBM6P78332 1123 aaKnown RBP19.87■□□□□ 0.77
VCX3A-202ENST00000398729 PNPLA6Q8IY17 1366 aa19.86■□□□□ 0.77
VCX3A-202ENST00000398729 NHSL1Q5SYE7 1610 aa19.85■□□□□ 0.77
VCX3A-202ENST00000398729 RGL3Q3MIN7 710 aa19.85■□□□□ 0.77
VCX3A-202ENST00000398729 SPATA31E1Q6ZUB1 1445 aa19.85■□□□□ 0.77
VCX3A-202ENST00000398729 RGS12O14924 1447 aa19.84■□□□□ 0.77
VCX3A-202ENST00000398729 ADGRL3Q9HAR2 1447 aa19.83■□□□□ 0.76
VCX3A-202ENST00000398729 ADAMTS2O95450 1211 aa19.82■□□□□ 0.76
VCX3A-202ENST00000398729 NGLY1Q96IV0 654 aa19.82■□□□□ 0.76
VCX3A-202ENST00000398729 ANKRD30BQ9BXX2 1392 aa19.82■□□□□ 0.76
VCX3A-202ENST00000398729 ORAI2Q96SN7 254 aa19.81■□□□□ 0.76
VCX3A-202ENST00000398729 IFT172Q9UG01 1749 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms