RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 RAPGEF4Q8WZA2 1011 aa14.05□□□□□ -0.16
TTC28-201ENST00000397906 CCDC34Q96HJ3 373 aa14.05□□□□□ -0.16
TTC28-201ENST00000397906 SF3A1Q15459 793 aaKnown RBP14.05□□□□□ -0.16
TTC28-201ENST00000397906 FAM177BA6PVY3 158 aa14.05□□□□□ -0.16
TTC28-201ENST00000397906 AKAP17AQ02040 695 aaKnown RBP14.04□□□□□ -0.16
TTC28-201ENST00000397906 ESCO1Q5FWF5 840 aa14.04□□□□□ -0.16
TTC28-201ENST00000397906 RBM33Q96EV2 1170 aaKnown RBP14.04□□□□□ -0.16
TTC28-201ENST00000397906 ZNF644Q9H582 1327 aaPredicted RBP14.04□□□□□ -0.16
TTC28-201ENST00000397906 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.04□□□□□ -0.16
TTC28-201ENST00000397906 SYAP1Q96A49 352 aaPredicted RBP14.04□□□□□ -0.16
TTC28-201ENST00000397906 USP47Q96K76 1375 aa14.04□□□□□ -0.16
TTC28-201ENST00000397906 ARHGAP5Q13017 1502 aa14.03□□□□□ -0.16
TTC28-201ENST00000397906 FYB1O15117 783 aa14.03□□□□□ -0.16
TTC28-201ENST00000397906 TMEM132EQ6IEE7 984 aa14.03□□□□□ -0.16
TTC28-201ENST00000397906 STRN4Q9NRL3 753 aa14.03□□□□□ -0.16
TTC28-201ENST00000397906 CABP2Q9NPB3 220 aa14.02□□□□□ -0.16
TTC28-201ENST00000397906 A0A0U1RQG5 324 aaPredicted RBP14.02□□□□□ -0.16
TTC28-201ENST00000397906 PIP4K2BP78356 416 aa14.02□□□□□ -0.16
TTC28-201ENST00000397906 RIPK4P57078 832 aa14.02□□□□□ -0.17
TTC28-201ENST00000397906 FKBP5Q13451 457 aaPredicted RBP14.02□□□□□ -0.17
TTC28-201ENST00000397906 MCTP1Q6DN14 999 aa14.01□□□□□ -0.17
TTC28-201ENST00000397906 DIAPH3Q9NSV4 1193 aa14.01□□□□□ -0.17
TTC28-201ENST00000397906 FAM184AQ8NB25 1140 aa14.01□□□□□ -0.17
TTC28-201ENST00000397906 ST18O60284 1047 aa14.01□□□□□ -0.17
TTC28-201ENST00000397906 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.01□□□□□ -0.17
TTC28-201ENST00000397906 DCAF8L1A6NGE4 600 aa14.01□□□□□ -0.17
TTC28-201ENST00000397906 TPD52L1Q16890 204 aaPredicted RBP14.01□□□□□ -0.17
TTC28-201ENST00000397906 SYNE3Q6ZMZ3 975 aa14□□□□□ -0.17
TTC28-201ENST00000397906 CEP89Q96ST8 783 aa14□□□□□ -0.17
TTC28-201ENST00000397906 PHLDB1Q86UU1 1377 aa14□□□□□ -0.17
TTC28-201ENST00000397906 IFIT2P09913 472 aaKnown RBP14□□□□□ -0.17
TTC28-201ENST00000397906 DDX58O95786 925 aaKnown RBP13.99□□□□□ -0.17
TTC28-201ENST00000397906 APAF1O14727 1248 aa13.99□□□□□ -0.17
TTC28-201ENST00000397906 TSPYL4Q9UJ04 414 aa13.99□□□□□ -0.17
TTC28-201ENST00000397906 KIF3AQ9Y496 699 aa13.99□□□□□ -0.17
TTC28-201ENST00000397906 PROSER2Q86WR7 435 aaPredicted RBP13.98□□□□□ -0.17
TTC28-201ENST00000397906 ZNF428Q96B54 188 aa13.98□□□□□ -0.17
TTC28-201ENST00000397906 MTMR7Q9Y216 660 aa13.98□□□□□ -0.17
TTC28-201ENST00000397906 RBM19Q9Y4C8 960 aaKnown RBP13.98□□□□□ -0.17
TTC28-201ENST00000397906 COG6Q9Y2V7 657 aa13.98□□□□□ -0.17
TTC28-201ENST00000397906 CSPP1Q1MSJ5 1256 aa13.98□□□□□ -0.17
TTC28-201ENST00000397906 ABTB2Q8N961 1025 aa13.98□□□□□ -0.17
TTC28-201ENST00000397906 CNKSR2Q8WXI2 1034 aa13.97□□□□□ -0.17
TTC28-201ENST00000397906 GGNBP2Q9H3C7 697 aa13.97□□□□□ -0.17
TTC28-201ENST00000397906 NLRP6P59044 892 aa13.97□□□□□ -0.17
TTC28-201ENST00000397906 CCDC27Q2M243 656 aa13.97□□□□□ -0.17
TTC28-201ENST00000397906 ZKSCAN2Q63HK3 967 aa13.97□□□□□ -0.17
TTC28-201ENST00000397906 RIC3Q7Z5B4 369 aa13.97□□□□□ -0.17
TTC28-201ENST00000397906 KRI1Q8N9T8 703 aaKnown RBP13.97□□□□□ -0.17
TTC28-201ENST00000397906 NEUROD6Q96NK8 337 aa13.97□□□□□ -0.17
TTC28-201ENST00000397906 PTMSP20962 102 aa13.97□□□□□ -0.17
TTC28-201ENST00000397906 RBM42Q9BTD8 480 aaKnown RBP13.96□□□□□ -0.17
TTC28-201ENST00000397906 FOSBP53539 338 aa13.96□□□□□ -0.17
TTC28-201ENST00000397906 DHX57Q6P158 1386 aaKnown RBP13.96□□□□□ -0.17
TTC28-201ENST00000397906 ANO2Q9NQ90 1003 aa13.96□□□□□ -0.17
TTC28-201ENST00000397906 SF3B2Q13435 895 aaKnown RBP13.96□□□□□ -0.18
TTC28-201ENST00000397906 E9PSI1 815 aa13.95□□□□□ -0.18
TTC28-201ENST00000397906 TXNDC2Q86VQ3 553 aa13.95□□□□□ -0.18
TTC28-201ENST00000397906 AFAP1Q8N556 730 aa13.95□□□□□ -0.18
TTC28-201ENST00000397906 NFXL1Q6ZNB6 911 aa13.95□□□□□ -0.18
TTC28-201ENST00000397906 LRRFIP1Q32MZ4 808 aaKnown RBP13.95□□□□□ -0.18
TTC28-201ENST00000397906 GPRASP1Q5JY77 1395 aa13.95□□□□□ -0.18
TTC28-201ENST00000397906 FBXO3Q9UK99 471 aa13.94□□□□□ -0.18
TTC28-201ENST00000397906 G3BP1Q13283 466 aaKnown RBP eCLIP13.94□□□□□ -0.18
TTC28-201ENST00000397906 TRIM29Q14134 588 aa13.94□□□□□ -0.18
TTC28-201ENST00000397906 KDM4AO75164 1064 aa13.93□□□□□ -0.18
TTC28-201ENST00000397906 MIA2Q96PC5 1412 aa13.92□□□□□ -0.18
TTC28-201ENST00000397906 ERICH2A1L162 156 aa13.92□□□□□ -0.18
TTC28-201ENST00000397906 PDE3BQ13370 1112 aa13.92□□□□□ -0.18
TTC28-201ENST00000397906 MYOM3Q5VTT5 1437 aa13.92□□□□□ -0.18
TTC28-201ENST00000397906 CRBNQ96SW2 442 aa13.92□□□□□ -0.18
TTC28-201ENST00000397906 DEKP35659 375 aaKnown RBP13.91□□□□□ -0.18
TTC28-201ENST00000397906 SLC4A3P48751 1232 aa13.91□□□□□ -0.18
TTC28-201ENST00000397906 DDX54Q8TDD1 881 aaKnown RBP13.91□□□□□ -0.18
TTC28-201ENST00000397906 CPLX1O14810 134 aa13.91□□□□□ -0.18
TTC28-201ENST00000397906 TPM3P06753 285 aa13.91□□□□□ -0.18
TTC28-201ENST00000397906 CCDC43Q96MW1 224 aaKnown RBP13.91□□□□□ -0.18
TTC28-201ENST00000397906 TRDNQ13061 729 aa13.9□□□□□ -0.18
TTC28-201ENST00000397906 IKQ13123 557 aaPredicted RBP13.9□□□□□ -0.18
TTC28-201ENST00000397906 PRG4Q92954 1404 aaPredicted RBP13.89□□□□□ -0.19
TTC28-201ENST00000397906 WASHC4Q2M389 1173 aa13.89□□□□□ -0.19
TTC28-201ENST00000397906 PCMTD1Q96MG8 357 aaPredicted RBP13.89□□□□□ -0.19
TTC28-201ENST00000397906 RUFY2Q8WXA3 655 aa13.89□□□□□ -0.19
TTC28-201ENST00000397906 EXOC6Q8TAG9 804 aa13.89□□□□□ -0.19
TTC28-201ENST00000397906 GOLGA6L3A6NEY3 463 aa13.88□□□□□ -0.19
TTC28-201ENST00000397906 KIF6Q6ZMV9 814 aa13.88□□□□□ -0.19
TTC28-201ENST00000397906 XPCQ01831 940 aaPredicted RBP13.88□□□□□ -0.19
TTC28-201ENST00000397906 TPM2P07951 284 aa13.88□□□□□ -0.19
TTC28-201ENST00000397906 TSR1Q2NL82 804 aaKnown RBP13.88□□□□□ -0.19
TTC28-201ENST00000397906 PHF14O94880 888 aa13.88□□□□□ -0.19
TTC28-201ENST00000397906 ZKSCAN1P17029 563 aaPredicted RBP13.88□□□□□ -0.19
TTC28-201ENST00000397906 TOM1L2Q6ZVM7 507 aa13.88□□□□□ -0.19
TTC28-201ENST00000397906 CUX1P39880 1505 aa13.87□□□□□ -0.19
TTC28-201ENST00000397906 SMG6Q86US8 1419 aaKnown RBP13.87□□□□□ -0.19
TTC28-201ENST00000397906 PRAM1Q96QH2 718 aa13.87□□□□□ -0.19
TTC28-201ENST00000397906 DZIP1LQ8IYY4 767 aaKnown RBP13.87□□□□□ -0.19
TTC28-201ENST00000397906 RUNDC1Q96C34 613 aa13.87□□□□□ -0.19
TTC28-201ENST00000397906 DDX19BQ9UMR2 479 aa13.87□□□□□ -0.19
TTC28-201ENST00000397906 CPLX2Q6PUV4 134 aaKnown RBP13.87□□□□□ -0.19
TTC28-201ENST00000397906 PRKRIP1Q9H875 184 aaPredicted RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms