RNA–Protein interactions for RNA: ENST00000396625.3

COL4A4-201, Transcript of collagen type IV alpha 4 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A4, Length 9,895 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4-201ENST00000396625 NASPP49321 788 aaPredicted RBP12.53□□□□□ -0.4
COL4A4-201ENST00000396625 CENPQQ7L2Z9 268 aaPredicted RBP12.53□□□□□ -0.4
COL4A4-201ENST00000396625 HDGFP51858 240 aaKnown RBP12.53□□□□□ -0.4
COL4A4-201ENST00000396625 SKIDA1Q1XH10 827 aa12.53□□□□□ -0.4
COL4A4-201ENST00000396625 CPLX1O14810 134 aa12.52□□□□□ -0.4
COL4A4-201ENST00000396625 CTDP1Q9Y5B0 961 aaPredicted RBP12.52□□□□□ -0.4
COL4A4-201ENST00000396625 KIF27Q86VH2 1401 aa12.52□□□□□ -0.4
COL4A4-201ENST00000396625 ANO2Q9NQ90 1003 aa12.52□□□□□ -0.4
COL4A4-201ENST00000396625 ENOX2Q16206 610 aaKnown RBP12.52□□□□□ -0.41
COL4A4-201ENST00000396625 PDILTQ8N807 584 aa12.52□□□□□ -0.41
COL4A4-201ENST00000396625 SLC4A3P48751 1232 aa12.52□□□□□ -0.41
COL4A4-201ENST00000396625 TAF3Q5VWG9 929 aa12.52□□□□□ -0.41
COL4A4-201ENST00000396625 TTLL5Q6EMB2 1281 aa12.52□□□□□ -0.41
COL4A4-201ENST00000396625 STK26Q9P289 416 aa12.51□□□□□ -0.41
COL4A4-201ENST00000396625 LMOD3Q0VAK6 560 aa12.51□□□□□ -0.41
COL4A4-201ENST00000396625 CPLX2Q6PUV4 134 aaKnown RBP12.51□□□□□ -0.41
COL4A4-201ENST00000396625 NOL10Q9BSC4 688 aaKnown RBP12.51□□□□□ -0.41
COL4A4-201ENST00000396625 R3HCC1Q9Y3T6 440 aaKnown RBP12.5□□□□□ -0.41
COL4A4-201ENST00000396625 CCDC146Q8IYE0 955 aa12.5□□□□□ -0.41
COL4A4-201ENST00000396625 ANKRD45Q5TZF3 282 aa12.5□□□□□ -0.41
COL4A4-201ENST00000396625 OLFM4Q6UX06 510 aa12.5□□□□□ -0.41
COL4A4-201ENST00000396625 CT47B1P0C2W7 299 aaPredicted RBP12.5□□□□□ -0.41
COL4A4-201ENST00000396625 HSPA5P11021 654 aaKnown RBP12.5□□□□□ -0.41
COL4A4-201ENST00000396625 OFD1O75665 1012 aa12.49□□□□□ -0.41
COL4A4-201ENST00000396625 RUFY2Q8WXA3 655 aa12.49□□□□□ -0.41
COL4A4-201ENST00000396625 ZKSCAN1P17029 563 aaPredicted RBP12.49□□□□□ -0.41
COL4A4-201ENST00000396625 CCP110O43303 1012 aa12.49□□□□□ -0.41
COL4A4-201ENST00000396625 GTF2E1P29083 439 aaPredicted RBP12.49□□□□□ -0.41
COL4A4-201ENST00000396625 CCDC73Q6ZRK6 1079 aa12.49□□□□□ -0.41
COL4A4-201ENST00000396625 DHX16O60231 1041 aaKnown RBP12.48□□□□□ -0.41
COL4A4-201ENST00000396625 SEPT7Q16181 437 aaKnown RBP12.48□□□□□ -0.41
COL4A4-201ENST00000396625 ERLIN2O94905 339 aa12.48□□□□□ -0.41
COL4A4-201ENST00000396625 CLASRPQ8N2M8 674 aaKnown RBP12.48□□□□□ -0.41
COL4A4-201ENST00000396625 WRNQ14191 1432 aaPredicted RBP eCLIP12.48□□□□□ -0.41
COL4A4-201ENST00000396625 VPS37CA5D8V6 355 aaPredicted RBP12.48□□□□□ -0.41
COL4A4-201ENST00000396625 FOSBP53539 338 aa12.48□□□□□ -0.41
COL4A4-201ENST00000396625 PDE4AP27815 886 aa12.47□□□□□ -0.41
COL4A4-201ENST00000396625 NFXL1Q6ZNB6 911 aa12.47□□□□□ -0.41
COL4A4-201ENST00000396625 SETD5Q9C0A6 1442 aa12.47□□□□□ -0.41
COL4A4-201ENST00000396625 NEFHP12036 1026 aa12.46□□□□□ -0.41
COL4A4-201ENST00000396625 ANKRD18AQ8IVF6 992 aa12.46□□□□□ -0.41
COL4A4-201ENST00000396625 DEF6Q9H4E7 631 aa12.46□□□□□ -0.42
COL4A4-201ENST00000396625 EZRP15311 586 aaKnown RBP12.46□□□□□ -0.42
COL4A4-201ENST00000396625 MAPK8IP2Q13387 824 aaPredicted RBP12.45□□□□□ -0.42
COL4A4-201ENST00000396625 DHX37Q8IY37 1157 aaKnown RBP12.45□□□□□ -0.42
COL4A4-201ENST00000396625 USP8P40818 1118 aa12.45□□□□□ -0.42
COL4A4-201ENST00000396625 SAFBQ15424 915 aaKnown RBP eCLIP12.45□□□□□ -0.42
COL4A4-201ENST00000396625 RNF20Q5VTR2 975 aa12.45□□□□□ -0.42
COL4A4-201ENST00000396625 ANKRD62A6NC57 917 aa12.44□□□□□ -0.42
COL4A4-201ENST00000396625 SMC2O95347 1197 aa12.44□□□□□ -0.42
COL4A4-201ENST00000396625 TRDNQ13061 729 aa12.44□□□□□ -0.42
COL4A4-201ENST00000396625 CENPHQ9H3R5 247 aa12.44□□□□□ -0.42
COL4A4-201ENST00000396625 ERICH2A1L162 156 aa12.44□□□□□ -0.42
COL4A4-201ENST00000396625 CCAR1Q8IX12 1150 aaKnown RBP12.44□□□□□ -0.42
COL4A4-201ENST00000396625 GIMAP7Q8NHV1 300 aa12.43□□□□□ -0.42
COL4A4-201ENST00000396625 VPS37DQ86XT2 251 aa12.43□□□□□ -0.42
COL4A4-201ENST00000396625 PDE3BQ13370 1112 aa12.43□□□□□ -0.42
COL4A4-201ENST00000396625 BAZ1AQ9NRL2 1556 aaPredicted RBP12.43□□□□□ -0.42
COL4A4-201ENST00000396625 BAZ1BQ9UIG0 1483 aaKnown RBP12.43□□□□□ -0.42
COL4A4-201ENST00000396625 SMARCE1Q969G3 411 aa12.43□□□□□ -0.42
COL4A4-201ENST00000396625 SMC3Q9UQE7 1217 aa12.43□□□□□ -0.42
COL4A4-201ENST00000396625 TRIM5Q9C035 493 aa12.43□□□□□ -0.42
COL4A4-201ENST00000396625 BRMS1Q9HCU9 246 aa12.43□□□□□ -0.42
COL4A4-201ENST00000396625 ROCK1Q13464 1354 aa12.42□□□□□ -0.42
COL4A4-201ENST00000396625 HMGN5P82970 282 aaKnown RBP12.42□□□□□ -0.42
COL4A4-201ENST00000396625 KIF15Q9NS87 1388 aa12.42□□□□□ -0.42
COL4A4-201ENST00000396625 TERF2IPQ9NYB0 399 aa12.42□□□□□ -0.42
COL4A4-201ENST00000396625 NUCB2P80303 420 aa12.42□□□□□ -0.42
COL4A4-201ENST00000396625 PAF1Q8N7H5 531 aa12.42□□□□□ -0.42
COL4A4-201ENST00000396625 GBP2P32456 591 aaPredicted RBP12.41□□□□□ -0.42
COL4A4-201ENST00000396625 CHMP5Q9NZZ3 219 aa12.41□□□□□ -0.42
COL4A4-201ENST00000396625 FANCIQ9NVI1 1328 aa12.41□□□□□ -0.42
COL4A4-201ENST00000396625 CWC22Q9HCG8 908 aaKnown RBP12.4□□□□□ -0.42
COL4A4-201ENST00000396625 RBM10P98175 930 aaKnown RBP12.4□□□□□ -0.42
COL4A4-201ENST00000396625 C9orf78Q9NZ63 289 aaPredicted RBP12.39□□□□□ -0.43
COL4A4-201ENST00000396625 EIF3JO75822 258 aaKnown RBP12.39□□□□□ -0.43
COL4A4-201ENST00000396625 LETM1O95202 739 aaPredicted RBP12.39□□□□□ -0.43
COL4A4-201ENST00000396625 MAGEC2Q9UBF1 373 aaPredicted RBP12.39□□□□□ -0.43
COL4A4-201ENST00000396625 MRE11P49959 708 aa12.39□□□□□ -0.43
COL4A4-201ENST00000396625 SYCP1Q15431 976 aa12.39□□□□□ -0.43
COL4A4-201ENST00000396625 KIF7Q2M1P5 1343 aa12.39□□□□□ -0.43
COL4A4-201ENST00000396625 IFIT2P09913 472 aaKnown RBP12.39□□□□□ -0.43
COL4A4-201ENST00000396625 ERICH4A6NGS2 130 aa12.38□□□□□ -0.43
COL4A4-201ENST00000396625 MLECQ14165 292 aa12.38□□□□□ -0.43
COL4A4-201ENST00000396625 TAX1BP1Q86VP1 789 aa12.38□□□□□ -0.43
COL4A4-201ENST00000396625 KINO60870 393 aaKnown RBP12.38□□□□□ -0.43
COL4A4-201ENST00000396625 RABEP1Q15276 862 aa12.38□□□□□ -0.43
COL4A4-201ENST00000396625 IQCEQ6IPM2 695 aa12.38□□□□□ -0.43
COL4A4-201ENST00000396625 PRDM2Q13029 1718 aa12.38□□□□□ -0.43
COL4A4-201ENST00000396625 NLRP13Q86W25 1043 aa12.38□□□□□ -0.43
COL4A4-201ENST00000396625 FAM193AP78312 1265 aa12.37□□□□□ -0.43
COL4A4-201ENST00000396625 SDF4Q9BRK5 362 aa12.37□□□□□ -0.43
COL4A4-201ENST00000396625 TSPY26PQ9H489 355 aa12.37□□□□□ -0.43
COL4A4-201ENST00000396625 AMPHP49418 695 aa12.37□□□□□ -0.43
COL4A4-201ENST00000396625 RRP7AQ9Y3A4 280 aaKnown RBP12.37□□□□□ -0.43
COL4A4-201ENST00000396625 NINLQ9Y2I6 1382 aa12.37□□□□□ -0.43
COL4A4-201ENST00000396625 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.37□□□□□ -0.43
COL4A4-201ENST00000396625 RRP1P56182 461 aaKnown RBP12.37□□□□□ -0.43
COL4A4-201ENST00000396625 ZKSCAN2Q63HK3 967 aa12.37□□□□□ -0.43
COL4A4-201ENST00000396625 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms