RNA–Protein interactions for RNA: ENST00000394611.6

RTN4-206, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,161 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-206ENST00000394611 NAIPQ13075 1403 aa11.47□□□□□ -0.57
RTN4-206ENST00000394611 CLUAP1Q96AJ1 413 aa11.47□□□□□ -0.57
RTN4-206ENST00000394611 ROCK1Q13464 1354 aa11.47□□□□□ -0.57
RTN4-206ENST00000394611 RRP1P56182 461 aaKnown RBP11.46□□□□□ -0.57
RTN4-206ENST00000394611 ZMYM4Q5VZL5 1548 aa11.46□□□□□ -0.57
RTN4-206ENST00000394611 TCERG1O14776 1098 aaKnown RBP11.46□□□□□ -0.57
RTN4-206ENST00000394611 TRIM44Q96DX7 344 aaPredicted RBP11.46□□□□□ -0.58
RTN4-206ENST00000394611 BCL2L13Q9BXK5 485 aa11.46□□□□□ -0.58
RTN4-206ENST00000394611 KIF7Q2M1P5 1343 aa11.45□□□□□ -0.58
RTN4-206ENST00000394611 HFM1A2PYH4 1435 aa11.45□□□□□ -0.58
RTN4-206ENST00000394611 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.45□□□□□ -0.58
RTN4-206ENST00000394611 DIP2CQ9Y2E4 1556 aa11.45□□□□□ -0.58
RTN4-206ENST00000394611 PLXNC1O60486 1568 aa11.44□□□□□ -0.58
RTN4-206ENST00000394611 ANKRD50Q9ULJ7 1429 aa11.44□□□□□ -0.58
RTN4-206ENST00000394611 ST20-MTHFSA0A0A6YYL1 179 aa11.43□□□□□ -0.58
RTN4-206ENST00000394611 CHGAP10645 457 aaKnown RBP11.43□□□□□ -0.58
RTN4-206ENST00000394611 PNNQ9H307 717 aaKnown RBP11.43□□□□□ -0.58
RTN4-206ENST00000394611 MAGI2Q86UL8 1455 aa11.43□□□□□ -0.58
RTN4-206ENST00000394611 A2MP01023 1474 aa11.43□□□□□ -0.58
RTN4-206ENST00000394611 NBPF8Q3BBV2 869 aa11.43□□□□□ -0.58
RTN4-206ENST00000394611 KIF3BO15066 747 aa11.42□□□□□ -0.58
RTN4-206ENST00000394611 GCC2Q8IWJ2 1684 aa11.42□□□□□ -0.58
RTN4-206ENST00000394611 DHX29Q7Z478 1369 aaKnown RBP11.42□□□□□ -0.58
RTN4-206ENST00000394611 ATP10AO60312 1499 aa11.42□□□□□ -0.58
RTN4-206ENST00000394611 DUOX2Q9NRD8 1548 aa11.42□□□□□ -0.58
RTN4-206ENST00000394611 SIGLEC1Q9BZZ2 1709 aa11.42□□□□□ -0.58
RTN4-206ENST00000394611 ARHGEF40Q8TER5 1519 aa11.42□□□□□ -0.58
RTN4-206ENST00000394611 PKD2Q13563 968 aa11.41□□□□□ -0.58
RTN4-206ENST00000394611 MLECQ14165 292 aa11.41□□□□□ -0.58
RTN4-206ENST00000394611 SLC24A1O60721 1099 aa11.4□□□□□ -0.58
RTN4-206ENST00000394611 GGT6Q6P531 493 aa11.4□□□□□ -0.58
RTN4-206ENST00000394611 BECN1Q14457 450 aa11.4□□□□□ -0.58
RTN4-206ENST00000394611 C20orf194Q5TEA3 1177 aa11.4□□□□□ -0.58
RTN4-206ENST00000394611 POGKQ9P215 609 aa11.39□□□□□ -0.59
RTN4-206ENST00000394611 RRP7AQ9Y3A4 280 aaKnown RBP11.38□□□□□ -0.59
RTN4-206ENST00000394611 CCDC7Q96M83 1385 aa11.38□□□□□ -0.59
RTN4-206ENST00000394611 ERBINQ96RT1 1412 aa11.38□□□□□ -0.59
RTN4-206ENST00000394611 MFAP1P55081 439 aaKnown RBP11.37□□□□□ -0.59
RTN4-206ENST00000394611 PKNOX2Q96KN3 472 aa11.37□□□□□ -0.59
RTN4-206ENST00000394611 BACH2Q9BYV9 841 aa11.37□□□□□ -0.59
RTN4-206ENST00000394611 HSP90AA2PQ14568 343 aaPredicted RBP11.36□□□□□ -0.59
RTN4-206ENST00000394611 ANP32BQ92688 251 aaKnown RBP11.36□□□□□ -0.59
RTN4-206ENST00000394611 A0A0U1RQG5 324 aaPredicted RBP11.36□□□□□ -0.59
RTN4-206ENST00000394611 NUP155O75694 1391 aa11.36□□□□□ -0.59
RTN4-206ENST00000394611 COG6Q9Y2V7 657 aa11.35□□□□□ -0.59
RTN4-206ENST00000394611 KNSTRNQ9Y448 316 aa11.34□□□□□ -0.59
RTN4-206ENST00000394611 REREQ9P2R6 1566 aa11.34□□□□□ -0.59
RTN4-206ENST00000394611 EIF2AK4Q9P2K8 1649 aaKnown RBP11.33□□□□□ -0.6
RTN4-206ENST00000394611 CNTLNQ9NXG0 1405 aa11.33□□□□□ -0.6
RTN4-206ENST00000394611 PLCB2Q00722 1185 aa11.33□□□□□ -0.6
RTN4-206ENST00000394611 USP35Q9P2H5 1018 aa11.33□□□□□ -0.6
RTN4-206ENST00000394611 MROH1Q8NDA8 1641 aa11.32□□□□□ -0.6
RTN4-206ENST00000394611 FOXD4L5Q5VV16 416 aaPredicted RBP11.32□□□□□ -0.6
RTN4-206ENST00000394611 FOXD4L4Q8WXT5 416 aaPredicted RBP11.32□□□□□ -0.6
RTN4-206ENST00000394611 APBB1O00213 710 aa11.32□□□□□ -0.6
RTN4-206ENST00000394611 AGLP35573 1532 aa11.32□□□□□ -0.6
RTN4-206ENST00000394611 WASHC2CQ9Y4E1 1318 aa11.31□□□□□ -0.6
RTN4-206ENST00000394611 GOLGA6L3A6NEY3 463 aa11.31□□□□□ -0.6
RTN4-206ENST00000394611 UNC13BO14795 1591 aa11.31□□□□□ -0.6
RTN4-206ENST00000394611 DEPDC5O75140 1603 aa11.31□□□□□ -0.6
RTN4-206ENST00000394611 FAM161AQ3B820 660 aa11.31□□□□□ -0.6
RTN4-206ENST00000394611 PLPPR3Q6T4P5 718 aa11.31□□□□□ -0.6
RTN4-206ENST00000394611 RNF17Q9BXT8 1623 aaKnown RBP11.3□□□□□ -0.6
RTN4-206ENST00000394611 DNTTIP2Q5QJE6 756 aaKnown RBP11.3□□□□□ -0.6
RTN4-206ENST00000394611 BCL11BQ9C0K0 894 aaPredicted RBP11.3□□□□□ -0.6
RTN4-206ENST00000394611 PZPP20742 1482 aa11.3□□□□□ -0.6
RTN4-206ENST00000394611 FOXD4L6Q3SYB3 417 aaPredicted RBP11.3□□□□□ -0.6
RTN4-206ENST00000394611 FOXD4L3Q6VB84 417 aaPredicted RBP11.3□□□□□ -0.6
RTN4-206ENST00000394611 USP47Q96K76 1375 aa11.3□□□□□ -0.6
RTN4-206ENST00000394611 BCORL1Q5H9F3 1711 aa11.3□□□□□ -0.6
RTN4-206ENST00000394611 KANK1Q14678 1352 aa11.3□□□□□ -0.6
RTN4-206ENST00000394611 FTSJ3Q8IY81 847 aaKnown RBP11.29□□□□□ -0.6
RTN4-206ENST00000394611 FAM135AQ9P2D6 1515 aa11.29□□□□□ -0.6
RTN4-206ENST00000394611 CEP152O94986 1710 aa11.29□□□□□ -0.6
RTN4-206ENST00000394611 PRDM15P57071 1507 aaPredicted RBP11.29□□□□□ -0.6
RTN4-206ENST00000394611 MPNDQ8N594 471 aa11.29□□□□□ -0.6
RTN4-206ENST00000394611 PANK1Q8TE04 598 aa11.29□□□□□ -0.6
RTN4-206ENST00000394611 RSPH6AQ9H0K4 717 aa11.29□□□□□ -0.6
RTN4-206ENST00000394611 RBM10P98175 930 aaKnown RBP11.28□□□□□ -0.6
RTN4-206ENST00000394611 PNISRQ8TF01 805 aaKnown RBP11.28□□□□□ -0.6
RTN4-206ENST00000394611 PANK3Q9H999 370 aa11.28□□□□□ -0.6
RTN4-206ENST00000394611 HSP90AB1P08238 724 aaKnown RBP11.28□□□□□ -0.6
RTN4-206ENST00000394611 ESF1Q9H501 851 aaKnown RBP11.28□□□□□ -0.6
RTN4-206ENST00000394611 SAFB2Q14151 953 aaKnown RBP eCLIP11.27□□□□□ -0.68e-8■■■□□ 19.2
RTN4-206ENST00000394611 IQGAP3Q86VI3 1631 aa11.27□□□□□ -0.61
RTN4-206ENST00000394611 CFAP65Q6ZU64 1925 aaKnown RBP11.27□□□□□ -0.61
RTN4-206ENST00000394611 CLTCQ00610 1675 aaKnown RBP11.27□□□□□ -0.61
RTN4-206ENST00000394611 APAF1O14727 1248 aa11.27□□□□□ -0.61
RTN4-206ENST00000394611 BCAR3O75815 825 aa11.27□□□□□ -0.61
RTN4-206ENST00000394611 NLRP13Q86W25 1043 aa11.27□□□□□ -0.61
RTN4-206ENST00000394611 ABCC3O15438 1527 aa11.27□□□□□ -0.61
RTN4-206ENST00000394611 KTN1Q86UP2 1357 aaKnown RBP11.26□□□□□ -0.61
RTN4-206ENST00000394611 VWDEQ8N2E2 1590 aa11.26□□□□□ -0.61
RTN4-206ENST00000394611 KDM5DQ9BY66 1539 aa11.26□□□□□ -0.61
RTN4-206ENST00000394611 PTMAP06454 111 aaKnown RBP11.26□□□□□ -0.61
RTN4-206ENST00000394611 CEBPAP49715 358 aaPredicted RBP11.26□□□□□ -0.61
RTN4-206ENST00000394611 FAM13BQ9NYF5 915 aa11.26□□□□□ -0.61
RTN4-206ENST00000394611 PANK2Q9BZ23 570 aa11.25□□□□□ -0.61
RTN4-206ENST00000394611 MYH16Q9H6N6 1097 aa11.25□□□□□ -0.61
RTN4-206ENST00000394611 ROCK2O75116 1388 aaKnown RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms