RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 KIAA1210Q9ULL0 1709 aa28.63■■■□□ 2.17
HDDC3-202ENST00000394272 NBPF1Q3BBV0 1214 aa28.61■■■□□ 2.17
HDDC3-202ENST00000394272 NEXMIFQ5QGS0 1516 aa28.61■■■□□ 2.17
HDDC3-202ENST00000394272 ADGRF5Q8IZF2 1346 aa28.59■■■□□ 2.17
HDDC3-202ENST00000394272 C3P01024 1663 aa28.56■■■□□ 2.16
HDDC3-202ENST00000394272 POLR1AO95602 1720 aaPredicted RBP28.55■■■□□ 2.16
HDDC3-202ENST00000394272 PIK3C2GO75747 1445 aa28.53■■■□□ 2.16
HDDC3-202ENST00000394272 TNRQ92752 1358 aa28.53■■■□□ 2.16
HDDC3-202ENST00000394272 ZFYVE9O95405 1425 aa28.52■■■□□ 2.16
HDDC3-202ENST00000394272 A2ML1A8K2U0 1454 aa28.51■■■□□ 2.15
HDDC3-202ENST00000394272 WASHC2AQ641Q2 1341 aa28.5■■■□□ 2.15
HDDC3-202ENST00000394272 IQGAP1P46940 1657 aa28.5■■■□□ 2.15
HDDC3-202ENST00000394272 C11orf95C9JLR9 678 aaPredicted RBP28.49■■■□□ 2.15
HDDC3-202ENST00000394272 KDM5AP29375 1690 aaKnown RBP28.48■■■□□ 2.15
HDDC3-202ENST00000394272 VGFO15240 615 aaPredicted RBP28.47■■■□□ 2.15
HDDC3-202ENST00000394272 ADAMTSL3P82987 1691 aa28.47■■■□□ 2.15
HDDC3-202ENST00000394272 ST20-MTHFSA0A0A6YYL1 179 aa28.46■■■□□ 2.15
HDDC3-202ENST00000394272 DDX10Q13206 875 aaKnown RBP28.46■■■□□ 2.15
HDDC3-202ENST00000394272 CFAP70Q5T0N1 1121 aa28.46■■■□□ 2.15
HDDC3-202ENST00000394272 SETBP1Q9Y6X0 1596 aa28.45■■■□□ 2.15
HDDC3-202ENST00000394272 CEBPAP49715 358 aaPredicted RBP28.45■■■□□ 2.15
HDDC3-202ENST00000394272 STAG3Q9UJ98 1225 aa28.45■■■□□ 2.15
HDDC3-202ENST00000394272 CCDC7Q96M83 1385 aa28.45■■■□□ 2.14
HDDC3-202ENST00000394272 SCAF11Q99590 1463 aaKnown RBP28.43■■■□□ 2.14
HDDC3-202ENST00000394272 C14orf93Q9H972 538 aaKnown RBP28.43■■■□□ 2.14
HDDC3-202ENST00000394272 RIMS1Q86UR5 1692 aaKnown RBP28.43■■■□□ 2.14
HDDC3-202ENST00000394272 NLRP1Q9C000 1473 aa28.42■■■□□ 2.14
HDDC3-202ENST00000394272 UBR1Q8IWV7 1749 aa28.42■■■□□ 2.14
HDDC3-202ENST00000394272 NUTM2DQ5VT03 806 aaPredicted RBP28.41■■■□□ 2.14
HDDC3-202ENST00000394272 KIF7Q2M1P5 1343 aa28.4■■■□□ 2.14
HDDC3-202ENST00000394272 ADGRB1O14514 1584 aa28.39■■■□□ 2.14
HDDC3-202ENST00000394272 RIMS2Q9UQ26 1411 aa28.37■■■□□ 2.13
HDDC3-202ENST00000394272 MIER1Q8N108 512 aa28.35■■■□□ 2.13
HDDC3-202ENST00000394272 TESK2Q96S53 571 aa28.34■■■□□ 2.13
HDDC3-202ENST00000394272 EIF3AQ14152 1382 aaKnown RBP28.31■■■□□ 2.12
HDDC3-202ENST00000394272 MYO3AQ8NEV4 1616 aa28.3■■■□□ 2.12
HDDC3-202ENST00000394272 TMEM2Q9UHN6 1383 aa28.29■■■□□ 2.12
HDDC3-202ENST00000394272 ASXL1Q8IXJ9 1541 aa28.28■■■□□ 2.12
HDDC3-202ENST00000394272 PLPPR3Q6T4P5 718 aa28.27■■■□□ 2.12
HDDC3-202ENST00000394272 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.27■■■□□ 2.12
HDDC3-202ENST00000394272 ALKQ9UM73 1620 aa28.27■■■□□ 2.12
HDDC3-202ENST00000394272 TMEM132EQ6IEE7 984 aa28.25■■■□□ 2.11
HDDC3-202ENST00000394272 SETD1AO15047 1707 aaKnown RBP28.24■■■□□ 2.11
HDDC3-202ENST00000394272 NRXN3Q9Y4C0 1643 aa28.24■■■□□ 2.11
HDDC3-202ENST00000394272 DISP3Q9P2K9 1392 aa28.23■■■□□ 2.11
HDDC3-202ENST00000394272 HDGFP51858 240 aaKnown RBP28.23■■■□□ 2.11
HDDC3-202ENST00000394272 SETD1BQ9UPS6 1966 aaKnown RBP28.22■■■□□ 2.11
HDDC3-202ENST00000394272 SLIT1O75093 1534 aa28.22■■■□□ 2.11
HDDC3-202ENST00000394272 ARHGEF28Q8N1W1 1705 aaKnown RBP28.21■■■□□ 2.11
HDDC3-202ENST00000394272 ARHGAP23Q9P227 1491 aa28.2■■■□□ 2.11
HDDC3-202ENST00000394272 CEP170BQ9Y4F5 1589 aaPredicted RBP28.2■■■□□ 2.11
HDDC3-202ENST00000394272 TMF1P82094 1093 aa28.2■■■□□ 2.1
HDDC3-202ENST00000394272 PTPRMP28827 1452 aa28.2■■■□□ 2.1
HDDC3-202ENST00000394272 TRAK1Q9UPV9 953 aa28.19■■■□□ 2.1
HDDC3-202ENST00000394272 SBNO2Q9Y2G9 1366 aa28.19■■■□□ 2.1
HDDC3-202ENST00000394272 POLR3GLQ9BT43 218 aa28.17■■■□□ 2.1
HDDC3-202ENST00000394272 ZNF142P52746 1687 aaPredicted RBP28.17■■■□□ 2.1
HDDC3-202ENST00000394272 SENP3Q9H4L4 574 aaPredicted RBP28.16■■■□□ 2.1
HDDC3-202ENST00000394272 CENPJQ9HC77 1338 aaPredicted RBP28.15■■■□□ 2.1
HDDC3-202ENST00000394272 QRICH2Q9H0J4 1663 aa28.15■■■□□ 2.1
HDDC3-202ENST00000394272 YTHDC2Q9H6S0 1430 aaKnown RBP28.14■■■□□ 2.1
HDDC3-202ENST00000394272 SLC24A1O60721 1099 aa28.14■■■□□ 2.1
HDDC3-202ENST00000394272 THEMISQ8N1K5 641 aaPredicted RBP28.14■■■□□ 2.1
HDDC3-202ENST00000394272 LTKP29376 864 aa28.12■■■□□ 2.09
HDDC3-202ENST00000394272 PLEKHG1Q9ULL1 1385 aa28.12■■■□□ 2.09
HDDC3-202ENST00000394272 ANP32CO43423 234 aa28.1■■■□□ 2.09
HDDC3-202ENST00000394272 TXNDC2Q86VQ3 553 aa28.09■■■□□ 2.09
HDDC3-202ENST00000394272 ADAMTS13Q76LX8 1427 aa28.08■■■□□ 2.09
HDDC3-202ENST00000394272 CDCA8Q53HL2 280 aa28.08■■■□□ 2.09
HDDC3-202ENST00000394272 EID1Q9Y6B2 187 aa28.08■■■□□ 2.09
HDDC3-202ENST00000394272 LRPPRCP42704 1394 aaKnown RBP28.06■■■□□ 2.08
HDDC3-202ENST00000394272 DLC1Q96QB1 1528 aa28.06■■■□□ 2.08
HDDC3-202ENST00000394272 STK26Q9P289 416 aa28.05■■■□□ 2.08
HDDC3-202ENST00000394272 METP08581 1390 aa28.05■■■□□ 2.08
HDDC3-202ENST00000394272 MED14O60244 1454 aa28.04■■■□□ 2.08
HDDC3-202ENST00000394272 ABCC11Q96J66 1382 aa28.02■■■□□ 2.08
HDDC3-202ENST00000394272 KNDC1Q76NI1 1749 aa28.02■■■□□ 2.08
HDDC3-202ENST00000394272 MYOM1P52179 1685 aa28.02■■■□□ 2.08
HDDC3-202ENST00000394272 BCANQ96GW7 911 aa27.99■■■□□ 2.07
HDDC3-202ENST00000394272 TECPR2O15040 1411 aa27.98■■■□□ 2.07
HDDC3-202ENST00000394272 TULP4Q9NRJ4 1543 aa27.97■■■□□ 2.07
HDDC3-202ENST00000394272 PRAM1Q96QH2 718 aa27.97■■■□□ 2.07
HDDC3-202ENST00000394272 DIP2AQ14689 1571 aa27.96■■■□□ 2.07
HDDC3-202ENST00000394272 CCER2I3L3R5 266 aa27.95■■■□□ 2.06
HDDC3-202ENST00000394272 PRKRIP1Q9H875 184 aaPredicted RBP27.95■■■□□ 2.06
HDDC3-202ENST00000394272 CPS1P31327 1500 aa27.94■■■□□ 2.06
HDDC3-202ENST00000394272 PER1O15534 1290 aaPredicted RBP27.93■■■□□ 2.06
HDDC3-202ENST00000394272 POGKQ9P215 609 aa27.92■■■□□ 2.06
HDDC3-202ENST00000394272 TBX22Q9Y458 520 aa27.92■■■□□ 2.06
HDDC3-202ENST00000394272 EVC2Q86UK5 1308 aa27.91■■■□□ 2.06
HDDC3-202ENST00000394272 SAFB2Q14151 953 aaKnown RBP eCLIP27.91■■■□□ 2.06
HDDC3-202ENST00000394272 SIRT1Q96EB6 747 aa27.91■■■□□ 2.06
HDDC3-202ENST00000394272 PUS7Q96PZ0 661 aaKnown RBP27.91■■■□□ 2.06
HDDC3-202ENST00000394272 PANK3Q9H999 370 aa27.91■■■□□ 2.06
HDDC3-202ENST00000394272 FAM135BQ49AJ0 1406 aa27.91■■■□□ 2.06
HDDC3-202ENST00000394272 SLC26A8Q96RN1 970 aa27.91■■■□□ 2.06
HDDC3-202ENST00000394272 ANKLE2Q86XL3 938 aa27.89■■■□□ 2.06
HDDC3-202ENST00000394272 PLEKHH1Q9ULM0 1364 aa27.89■■■□□ 2.06
HDDC3-202ENST00000394272 PTPRUQ92729 1446 aa27.87■■■□□ 2.05
HDDC3-202ENST00000394272 KDM4FA0A1W2PPD8 638 aa27.87■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms