RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 ARAP1Q96P48 1450 aa24.33■■□□□ 1.49
SHANK1-203ENST00000391813 AAMPQ13685 434 aa24.33■■□□□ 1.49
SHANK1-203ENST00000391813 TPM2P07951 284 aa24.33■■□□□ 1.49
SHANK1-203ENST00000391813 CCDC146Q8IYE0 955 aa24.33■■□□□ 1.49
SHANK1-203ENST00000391813 CCDC7Q96M83 1385 aa24.32■■□□□ 1.48
SHANK1-203ENST00000391813 MIA2Q96PC5 1412 aa24.32■■□□□ 1.48
SHANK1-203ENST00000391813 EVC2Q86UK5 1308 aa24.32■■□□□ 1.48
SHANK1-203ENST00000391813 USP47Q96K76 1375 aa24.31■■□□□ 1.48
SHANK1-203ENST00000391813 ATP6V1DQ9Y5K8 247 aa24.31■■□□□ 1.48
SHANK1-203ENST00000391813 IQGAP2Q13576 1575 aa24.31■■□□□ 1.48
SHANK1-203ENST00000391813 CUL7Q14999 1698 aa24.31■■□□□ 1.48
SHANK1-203ENST00000391813 HECW1Q76N89 1606 aa24.3■■□□□ 1.48
SHANK1-203ENST00000391813 POGZQ7Z3K3 1410 aa24.3■■□□□ 1.48
SHANK1-203ENST00000391813 GOLGA6L1Q8N7Z2 621 aa24.3■■□□□ 1.48
SHANK1-203ENST00000391813 EHBP1L1Q8N3D4 1523 aa24.3■■□□□ 1.48
SHANK1-203ENST00000391813 KIF16BQ96L93 1317 aa24.29■■□□□ 1.48
SHANK1-203ENST00000391813 ZKSCAN2Q63HK3 967 aa24.29■■□□□ 1.48
SHANK1-203ENST00000391813 COG6Q9Y2V7 657 aa24.27■■□□□ 1.48
SHANK1-203ENST00000391813 ISY1Q9ULR0 285 aaKnown RBP24.26■■□□□ 1.47
SHANK1-203ENST00000391813 PANK3Q9H999 370 aa24.26■■□□□ 1.47
SHANK1-203ENST00000391813 CCDC9Q9Y3X0 531 aaKnown RBP24.26■■□□□ 1.47
SHANK1-203ENST00000391813 ZNF771Q7L3S4 317 aaPredicted RBP24.25■■□□□ 1.47
SHANK1-203ENST00000391813 AMPHP49418 695 aa24.25■■□□□ 1.47
SHANK1-203ENST00000391813 NUCB2P80303 420 aa24.24■■□□□ 1.47
SHANK1-203ENST00000391813 BACH2Q9BYV9 841 aa24.22■■□□□ 1.47
SHANK1-203ENST00000391813 SCAPERQ9BY12 1400 aa24.22■■□□□ 1.47
SHANK1-203ENST00000391813 TRIM6-TRIM34B2RNG4 842 aa24.21■■□□□ 1.47
SHANK1-203ENST00000391813 KIF7Q2M1P5 1343 aa24.21■■□□□ 1.47
SHANK1-203ENST00000391813 GNL2Q13823 731 aaKnown RBP24.2■■□□□ 1.46
SHANK1-203ENST00000391813 CCDC34Q96HJ3 373 aa24.2■■□□□ 1.46
SHANK1-203ENST00000391813 NUTM2FA1L443 756 aa24.2■■□□□ 1.46
SHANK1-203ENST00000391813 FRAT2O75474 233 aaPredicted RBP24.2■■□□□ 1.46
SHANK1-203ENST00000391813 DDX19BQ9UMR2 479 aa24.19■■□□□ 1.46
SHANK1-203ENST00000391813 THEMISQ8N1K5 641 aaPredicted RBP24.19■■□□□ 1.46
SHANK1-203ENST00000391813 HDAC5Q9UQL6 1122 aa24.19■■□□□ 1.46
SHANK1-203ENST00000391813 LMOD3Q0VAK6 560 aa24.19■■□□□ 1.46
SHANK1-203ENST00000391813 BRD4O60885 1362 aaPredicted RBP24.19■■□□□ 1.46
SHANK1-203ENST00000391813 C22orf23Q9BZE7 217 aa24.18■■□□□ 1.46
SHANK1-203ENST00000391813 TAOK2Q9UL54 1235 aa24.18■■□□□ 1.46
SHANK1-203ENST00000391813 TRAK2O60296 914 aa24.18■■□□□ 1.46
SHANK1-203ENST00000391813 KIF3AQ9Y496 699 aa24.18■■□□□ 1.46
SHANK1-203ENST00000391813 NASPP49321 788 aaPredicted RBP24.17■■□□□ 1.46
SHANK1-203ENST00000391813 ANKRD45Q5TZF3 282 aa24.17■■□□□ 1.46
SHANK1-203ENST00000391813 SLC52A1Q9NWF4 448 aa24.17■■□□□ 1.46
SHANK1-203ENST00000391813 C9orf84Q5VXU9 1444 aa24.17■■□□□ 1.46
SHANK1-203ENST00000391813 REC8O95072 547 aa24.17■■□□□ 1.46
SHANK1-203ENST00000391813 RRP9O43818 475 aaKnown RBP24.16■■□□□ 1.46
SHANK1-203ENST00000391813 STK31Q9BXU1 1019 aa24.16■■□□□ 1.46
SHANK1-203ENST00000391813 ZNF608Q9ULD9 1512 aaPredicted RBP24.16■■□□□ 1.46
SHANK1-203ENST00000391813 WASHC2AQ641Q2 1341 aa24.16■■□□□ 1.46
SHANK1-203ENST00000391813 GPATCH3Q96I76 525 aa24.15■■□□□ 1.46
SHANK1-203ENST00000391813 COG3Q96JB2 828 aa24.15■■□□□ 1.46
SHANK1-203ENST00000391813 CD109Q6YHK3 1445 aa24.15■■□□□ 1.46
SHANK1-203ENST00000391813 APAF1O14727 1248 aa24.15■■□□□ 1.46
SHANK1-203ENST00000391813 MINK1Q8N4C8 1332 aaPredicted RBP24.14■■□□□ 1.46
SHANK1-203ENST00000391813 ATF3P18847 181 aa24.14■■□□□ 1.46
SHANK1-203ENST00000391813 DIAPH3Q9NSV4 1193 aa24.14■■□□□ 1.46
SHANK1-203ENST00000391813 GOLGA6L19H0YKK7 550 aa24.14■■□□□ 1.45
SHANK1-203ENST00000391813 RAPGEF3O95398 923 aa24.14■■□□□ 1.45
SHANK1-203ENST00000391813 GPS2Q13227 327 aa24.13■■□□□ 1.45
SHANK1-203ENST00000391813 MSH5O43196 834 aa24.13■■□□□ 1.45
SHANK1-203ENST00000391813 FOXD4L5Q5VV16 416 aaPredicted RBP24.13■■□□□ 1.45
SHANK1-203ENST00000391813 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.13■■□□□ 1.45
SHANK1-203ENST00000391813 FOXD4L4Q8WXT5 416 aaPredicted RBP24.13■■□□□ 1.45
SHANK1-203ENST00000391813 NOL8Q76FK4 1167 aaKnown RBP24.13■■□□□ 1.45
SHANK1-203ENST00000391813 CCDC39Q9UFE4 941 aa24.13■■□□□ 1.45
SHANK1-203ENST00000391813 EPRSP07814 1512 aaKnown RBP24.13■■□□□ 1.45
SHANK1-203ENST00000391813 HFM1A2PYH4 1435 aa24.13■■□□□ 1.45
SHANK1-203ENST00000391813 R3HCC1Q9Y3T6 440 aaKnown RBP24.12■■□□□ 1.45
SHANK1-203ENST00000391813 BCL2L13Q9BXK5 485 aa24.11■■□□□ 1.45
SHANK1-203ENST00000391813 TXNDC2Q86VQ3 553 aa24.11■■□□□ 1.45
SHANK1-203ENST00000391813 RRBP1Q9P2E9 1410 aaKnown RBP24.11■■□□□ 1.45
SHANK1-203ENST00000391813 TEX35Q5T0J7 233 aa24.1■■□□□ 1.45
SHANK1-203ENST00000391813 DZIP1LQ8IYY4 767 aaKnown RBP24.1■■□□□ 1.45
SHANK1-203ENST00000391813 CCDC173Q0VFZ6 552 aa24.09■■□□□ 1.45
SHANK1-203ENST00000391813 BECN2A8MW95 431 aa24.09■■□□□ 1.45
SHANK1-203ENST00000391813 HMGN5P82970 282 aaKnown RBP24.08■■□□□ 1.45
SHANK1-203ENST00000391813 SMG6Q86US8 1419 aaKnown RBP24.07■■□□□ 1.44
SHANK1-203ENST00000391813 PSME1Q06323 249 aa24.07■■□□□ 1.44
SHANK1-203ENST00000391813 RRP7AQ9Y3A4 280 aaKnown RBP24.07■■□□□ 1.44
SHANK1-203ENST00000391813 CHMP4CQ96CF2 233 aa24.06■■□□□ 1.44
SHANK1-203ENST00000391813 SETQ01105 290 aaPredicted RBP24.04■■□□□ 1.44
SHANK1-203ENST00000391813 TPM3P06753 285 aa24.04■■□□□ 1.44
SHANK1-203ENST00000391813 EVA1CP58658 441 aa24.03■■□□□ 1.44
SHANK1-203ENST00000391813 TIAM1Q13009 1591 aa24.02■■□□□ 1.44
SHANK1-203ENST00000391813 HSP90B1P14625 803 aaKnown RBP24.02■■□□□ 1.44
SHANK1-203ENST00000391813 MCTP1Q6DN14 999 aa24.02■■□□□ 1.44
SHANK1-203ENST00000391813 LTV1Q96GA3 475 aaPredicted RBP24.02■■□□□ 1.44
SHANK1-203ENST00000391813 BIVM-ERCC5R4GMW8 1640 aa24.01■■□□□ 1.43
SHANK1-203ENST00000391813 PLB1Q6P1J6 1458 aa24.01■■□□□ 1.43
SHANK1-203ENST00000391813 MBD3O95983 291 aa24.01■■□□□ 1.43
SHANK1-203ENST00000391813 SF3A1Q15459 793 aaKnown RBP24■■□□□ 1.43
SHANK1-203ENST00000391813 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24■■□□□ 1.43
SHANK1-203ENST00000391813 ANKLE2Q86XL3 938 aa24■■□□□ 1.43
SHANK1-203ENST00000391813 ESPNB1AK53 854 aa23.99■■□□□ 1.43
SHANK1-203ENST00000391813 SLC4A10Q6U841 1118 aa23.99■■□□□ 1.43
SHANK1-203ENST00000391813 CCDC66A2RUB6 948 aa23.99■■□□□ 1.43
SHANK1-203ENST00000391813 ZNF592Q92610 1267 aa23.99■■□□□ 1.43
SHANK1-203ENST00000391813 AKNAQ7Z591 1439 aa23.99■■□□□ 1.43
SHANK1-203ENST00000391813 INTS3Q68E01 1043 aaKnown RBP23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms