RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TMEM131LA2VDJ0 1609 aa14.69□□□□□ -0.06
VPS53-202ENST00000389040 TXNDC2Q86VQ3 553 aa14.68□□□□□ -0.06
VPS53-202ENST00000389040 MED14O60244 1454 aa14.67□□□□□ -0.06
VPS53-202ENST00000389040 VGFO15240 615 aaPredicted RBP14.67□□□□□ -0.06
VPS53-202ENST00000389040 DIEXFQ68CQ4 756 aaKnown RBP14.67□□□□□ -0.06
VPS53-202ENST00000389040 SPATA31E1Q6ZUB1 1445 aa14.67□□□□□ -0.06
VPS53-202ENST00000389040 CLTCL1P53675 1640 aa14.67□□□□□ -0.06
VPS53-202ENST00000389040 ZNF326Q5BKZ1 582 aaKnown RBP14.66□□□□□ -0.06
VPS53-202ENST00000389040 SCAF11Q99590 1463 aaKnown RBP14.66□□□□□ -0.06
VPS53-202ENST00000389040 ZFYVE9O95405 1425 aa14.66□□□□□ -0.06
VPS53-202ENST00000389040 RIMS2Q9UQ26 1411 aa14.66□□□□□ -0.06
VPS53-202ENST00000389040 LTKP29376 864 aa14.64□□□□□ -0.07
VPS53-202ENST00000389040 NCKAP5LQ9HCH0 1330 aa14.64□□□□□ -0.07
VPS53-202ENST00000389040 PPP1R15AO75807 674 aaPredicted RBP14.63□□□□□ -0.07
VPS53-202ENST00000389040 PLEKHG1Q9ULL1 1385 aa14.63□□□□□ -0.07
VPS53-202ENST00000389040 NPHP4O75161 1426 aaPredicted RBP14.62□□□□□ -0.07
VPS53-202ENST00000389040 KIF1BO60333 1816 aa14.61□□□□□ -0.07
VPS53-202ENST00000389040 RGL3Q3MIN7 710 aa14.6□□□□□ -0.07
VPS53-202ENST00000389040 TIMELESSQ9UNS1 1208 aa14.6□□□□□ -0.07
VPS53-202ENST00000389040 TBX22Q9Y458 520 aa14.59□□□□□ -0.07
VPS53-202ENST00000389040 STRCQ7RTU9 1775 aa14.58□□□□□ -0.08
VPS53-202ENST00000389040 NEXMIFQ5QGS0 1516 aa14.57□□□□□ -0.08
VPS53-202ENST00000389040 PIK3R4Q99570 1358 aa14.56□□□□□ -0.08
VPS53-202ENST00000389040 BCANQ96GW7 911 aa14.56□□□□□ -0.08
VPS53-202ENST00000389040 MYOM2P54296 1465 aa14.55□□□□□ -0.08
VPS53-202ENST00000389040 SIN3AQ96ST3 1273 aa14.55□□□□□ -0.08
VPS53-202ENST00000389040 POLR1AO95602 1720 aaPredicted RBP14.55□□□□□ -0.08
VPS53-202ENST00000389040 KCNA4P22459 653 aa14.54□□□□□ -0.08
VPS53-202ENST00000389040 DCAF11Q8TEB1 546 aa14.54□□□□□ -0.08
VPS53-202ENST00000389040 NEUROD1Q13562 356 aa14.54□□□□□ -0.08
VPS53-202ENST00000389040 SETBP1Q9Y6X0 1596 aa14.54□□□□□ -0.08
VPS53-202ENST00000389040 NRXN1Q9ULB1 1477 aa14.53□□□□□ -0.08
VPS53-202ENST00000389040 IQGAP1P46940 1657 aa14.53□□□□□ -0.08
VPS53-202ENST00000389040 DIP2AQ14689 1571 aa14.53□□□□□ -0.08
VPS53-202ENST00000389040 NUTM2DQ5VT03 806 aaPredicted RBP14.52□□□□□ -0.09
VPS53-202ENST00000389040 PIK3C2GO75747 1445 aa14.51□□□□□ -0.09
VPS53-202ENST00000389040 ADAMTS13Q76LX8 1427 aa14.51□□□□□ -0.09
VPS53-202ENST00000389040 ADGRF5Q8IZF2 1346 aa14.51□□□□□ -0.09
VPS53-202ENST00000389040 L3MBTL2Q969R5 705 aa14.51□□□□□ -0.09
VPS53-202ENST00000389040 SLC26A8Q96RN1 970 aa14.51□□□□□ -0.09
VPS53-202ENST00000389040 MYO5BQ9ULV0 1848 aa14.51□□□□□ -0.09
VPS53-202ENST00000389040 TONSLQ96HA7 1378 aa14.51□□□□□ -0.09
VPS53-202ENST00000389040 KCNA6P17658 529 aa14.51□□□□□ -0.09
VPS53-202ENST00000389040 C14orf93Q9H972 538 aaKnown RBP14.51□□□□□ -0.09
VPS53-202ENST00000389040 PPLO60437 1756 aa14.49□□□□□ -0.09
VPS53-202ENST00000389040 KDM2AQ9Y2K7 1162 aa14.48□□□□□ -0.09
VPS53-202ENST00000389040 IFT172Q9UG01 1749 aa14.47□□□□□ -0.09
VPS53-202ENST00000389040 CPS1P31327 1500 aa14.46□□□□□ -0.09
VPS53-202ENST00000389040 ZNF335Q9H4Z2 1342 aaPredicted RBP14.45□□□□□ -0.1
VPS53-202ENST00000389040 PRAG1Q86YV5 1406 aa14.45□□□□□ -0.1
VPS53-202ENST00000389040 ALKQ9UM73 1620 aa14.45□□□□□ -0.1
VPS53-202ENST00000389040 SIRT1Q96EB6 747 aa14.45□□□□□ -0.1
VPS53-202ENST00000389040 NCOA3Q9Y6Q9 1424 aa14.44□□□□□ -0.1
VPS53-202ENST00000389040 METP08581 1390 aa14.44□□□□□ -0.1
VPS53-202ENST00000389040 NKTRP30414 1462 aaKnown RBP14.43□□□□□ -0.1
VPS53-202ENST00000389040 AMOTL2Q9Y2J4 779 aa14.43□□□□□ -0.1
VPS53-202ENST00000389040 NRXN3Q9Y4C0 1643 aa14.43□□□□□ -0.1
VPS53-202ENST00000389040 ABCC11Q96J66 1382 aa14.43□□□□□ -0.1
VPS53-202ENST00000389040 CFAP70Q5T0N1 1121 aa14.43□□□□□ -0.1
VPS53-202ENST00000389040 LAMC1P11047 1609 aa14.42□□□□□ -0.1
VPS53-202ENST00000389040 IQSEC2Q5JU85 1478 aa14.42□□□□□ -0.1
VPS53-202ENST00000389040 LTBP4Q8N2S1 1624 aa14.41□□□□□ -0.1
VPS53-202ENST00000389040 LRPPRCP42704 1394 aaKnown RBP14.41□□□□□ -0.1
VPS53-202ENST00000389040 NWD1Q149M9 1564 aa14.41□□□□□ -0.1
VPS53-202ENST00000389040 TECPR2O15040 1411 aa14.4□□□□□ -0.1
VPS53-202ENST00000389040 PTCH1Q13635 1447 aa14.39□□□□□ -0.11
VPS53-202ENST00000389040 PROSER2Q86WR7 435 aaPredicted RBP14.39□□□□□ -0.11
VPS53-202ENST00000389040 MIER1Q8N108 512 aa14.39□□□□□ -0.11
VPS53-202ENST00000389040 CERKQ8TCT0 537 aa14.39□□□□□ -0.11
VPS53-202ENST00000389040 PTPRUQ92729 1446 aa14.38□□□□□ -0.11
VPS53-202ENST00000389040 YTHDC2Q9H6S0 1430 aaKnown RBP14.38□□□□□ -0.11
VPS53-202ENST00000389040 FAM135BQ49AJ0 1406 aa14.37□□□□□ -0.11
VPS53-202ENST00000389040 KIAA1210Q9ULL0 1709 aa14.37□□□□□ -0.11
VPS53-202ENST00000389040 TMEM132EQ6IEE7 984 aa14.37□□□□□ -0.11
VPS53-202ENST00000389040 LRRC7Q96NW7 1537 aa14.36□□□□□ -0.11
VPS53-202ENST00000389040 ADGRB1O14514 1584 aa14.36□□□□□ -0.11
VPS53-202ENST00000389040 CHD2O14647 1828 aaKnown RBP14.36□□□□□ -0.11
VPS53-202ENST00000389040 SETD1AO15047 1707 aaKnown RBP14.35□□□□□ -0.11
VPS53-202ENST00000389040 GPRASP1Q5JY77 1395 aa14.35□□□□□ -0.11
VPS53-202ENST00000389040 TMEM94Q12767 1356 aa14.35□□□□□ -0.11
VPS53-202ENST00000389040 NBPF8Q3BBV2 869 aa14.35□□□□□ -0.11
VPS53-202ENST00000389040 C19orf44Q9H6X5 657 aa14.35□□□□□ -0.11
VPS53-202ENST00000389040 ROCK2O75116 1388 aaKnown RBP14.34□□□□□ -0.11
VPS53-202ENST00000389040 XRN1Q8IZH2 1706 aaKnown RBP14.34□□□□□ -0.11
VPS53-202ENST00000389040 DLC1Q96QB1 1528 aa14.34□□□□□ -0.11
VPS53-202ENST00000389040 NBPF1Q3BBV0 1214 aa14.33□□□□□ -0.11
VPS53-202ENST00000389040 SLC24A1O60721 1099 aa14.33□□□□□ -0.12
VPS53-202ENST00000389040 STK26Q9P289 416 aa14.33□□□□□ -0.12
VPS53-202ENST00000389040 ROBO2Q9HCK4 1378 aa14.32□□□□□ -0.12
VPS53-202ENST00000389040 ASXL1Q8IXJ9 1541 aa14.32□□□□□ -0.12
VPS53-202ENST00000389040 RALGAPBQ86X10 1494 aa14.32□□□□□ -0.12
VPS53-202ENST00000389040 MSH6P52701 1360 aa14.32□□□□□ -0.12
VPS53-202ENST00000389040 DCCP43146 1447 aa14.31□□□□□ -0.12
VPS53-202ENST00000389040 TOM1O60784 492 aa14.31□□□□□ -0.12
VPS53-202ENST00000389040 CENPBP07199 599 aaPredicted RBP14.31□□□□□ -0.12
VPS53-202ENST00000389040 CADPS2Q86UW7 1296 aa14.31□□□□□ -0.12
VPS53-202ENST00000389040 TRAK1Q9UPV9 953 aa14.31□□□□□ -0.12
VPS53-202ENST00000389040 EIF3AQ14152 1382 aaKnown RBP14.3□□□□□ -0.12
VPS53-202ENST00000389040 POGKQ9P215 609 aa14.3□□□□□ -0.12
VPS53-202ENST00000389040 C14orf37Q86TY3 774 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms