RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 PLPP6Q8IY26 295 aa3.18□□□□□ -1.9
RNU6-540P-201ENST00000384622 COL9A1P20849 921 aa3.17□□□□□ -1.9
RNU6-540P-201ENST00000384622 JPH4Q96JJ6 628 aa3.17□□□□□ -1.9
RNU6-540P-201ENST00000384622 SLURP2P0DP57 97 aa3.16□□□□□ -1.9
RNU6-540P-201ENST00000384622 KLHL34Q8N239 644 aa3.16□□□□□ -1.9
RNU6-540P-201ENST00000384622 FBXO22Q8NEZ5 403 aa3.16□□□□□ -1.9
RNU6-540P-201ENST00000384622 TTC24A2A3L6 582 aaPredicted RBP3.15□□□□□ -1.91
RNU6-540P-201ENST00000384622 ZPR1O75312 459 aa3.15□□□□□ -1.91
RNU6-540P-201ENST00000384622 PROCP04070 461 aa3.15□□□□□ -1.91
RNU6-540P-201ENST00000384622 MARSP56192 900 aaKnown RBP3.15□□□□□ -1.91
RNU6-540P-201ENST00000384622 YBX3P16989 372 aaKnown RBP eCLIP3.14□□□□□ -1.91
RNU6-540P-201ENST00000384622 FOXK1P85037 733 aa3.14□□□□□ -1.91
RNU6-540P-201ENST00000384622 APLP1P51693 650 aa3.13□□□□□ -1.91
RNU6-540P-201ENST00000384622 SCARF2Q96GP6 870 aaPredicted RBP3.13□□□□□ -1.91
RNU6-540P-201ENST00000384622 FURINP09958 794 aa3.12□□□□□ -1.91
RNU6-540P-201ENST00000384622 VSIG8P0DPA2 414 aa3.12□□□□□ -1.91
RNU6-540P-201ENST00000384622 SAMD7Q7Z3H4 446 aa3.12□□□□□ -1.91
RNU6-540P-201ENST00000384622 UPF1Q92900 1129 aaKnown RBP eCLIP3.12□□□□□ -1.91
RNU6-540P-201ENST00000384622 TRIM6-TRIM34B2RNG4 842 aa3.11□□□□□ -1.91
RNU6-540P-201ENST00000384622 SVOPQ8N4V2 548 aa3.11□□□□□ -1.91
RNU6-540P-201ENST00000384622 CIZ1Q9ULV3 898 aaPredicted RBP3.11□□□□□ -1.91
RNU6-540P-201ENST00000384622 ITGB2P05107 769 aa3.1□□□□□ -1.91
RNU6-540P-201ENST00000384622 BAG6P46379 1132 aa3.1□□□□□ -1.91
RNU6-540P-201ENST00000384622 FZD5Q13467 585 aa3.1□□□□□ -1.91
RNU6-540P-201ENST00000384622 OXER1Q8TDS5 423 aa3.1□□□□□ -1.91
RNU6-540P-201ENST00000384622 RNF40O75150 1001 aa3.09□□□□□ -1.91
RNU6-540P-201ENST00000384622 S1PR4O95977 384 aa3.09□□□□□ -1.91
RNU6-540P-201ENST00000384622 PLA2G2CQ5R387 149 aa3.09□□□□□ -1.91
RNU6-540P-201ENST00000384622 SMPD1P17405 629 aa3.08□□□□□ -1.92
RNU6-540P-201ENST00000384622 ZMYM1Q5SVZ6 1142 aa3.08□□□□□ -1.92
RNU6-540P-201ENST00000384622 DCAF5Q96JK2 942 aa3.08□□□□□ -1.92
RNU6-540P-201ENST00000384622 CD2BP2O95400 341 aaKnown RBP3.07□□□□□ -1.92
RNU6-540P-201ENST00000384622 DSG2Q14126 1118 aa3.07□□□□□ -1.92
RNU6-540P-201ENST00000384622 ZNF385CQ66K41 422 aaPredicted RBP3.07□□□□□ -1.92
RNU6-540P-201ENST00000384622 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP3.06□□□□□ -1.92
RNU6-540P-201ENST00000384622 SCO2A0A1W2PP80 73 aa3.06□□□□□ -1.92
RNU6-540P-201ENST00000384622 NBPF11Q86T75 865 aa3.06□□□□□ -1.92
RNU6-540P-201ENST00000384622 ZFP91Q96JP5 570 aaPredicted RBP3.06□□□□□ -1.92
RNU6-540P-201ENST00000384622 PACS2Q86VP3 889 aa3.05□□□□□ -1.92
RNU6-540P-201ENST00000384622 SNIP1Q8TAD8 396 aaKnown RBP3.05□□□□□ -1.92
RNU6-540P-201ENST00000384622 HPS1Q92902 700 aa3.05□□□□□ -1.92
RNU6-540P-201ENST00000384622 CNTNAP3BQ96NU0 1288 aa3.05□□□□□ -1.92
RNU6-540P-201ENST00000384622 MFRPQ9BY79 579 aa3.05□□□□□ -1.92
RNU6-540P-201ENST00000384622 CNTNAP3Q9BZ76 1288 aa3.05□□□□□ -1.92
RNU6-540P-201ENST00000384622 GPHNQ9NQX3 736 aaPredicted RBP3.05□□□□□ -1.92
RNU6-540P-201ENST00000384622 TLL1O43897 1013 aa3.04□□□□□ -1.92
RNU6-540P-201ENST00000384622 EVI5O60447 810 aa3.04□□□□□ -1.92
RNU6-540P-201ENST00000384622 ARHGEF15O94989 841 aa3.04□□□□□ -1.92
RNU6-540P-201ENST00000384622 HDGFP51858 240 aaKnown RBP3.04□□□□□ -1.92
RNU6-540P-201ENST00000384622 NECTIN2Q92692 538 aa3.04□□□□□ -1.92
RNU6-540P-201ENST00000384622 J3QL48 77 aa3.03□□□□□ -1.92
RNU6-540P-201ENST00000384622 TXKP42681 527 aa3.03□□□□□ -1.92
RNU6-540P-201ENST00000384622 RPIAP49247 311 aa3.03□□□□□ -1.92
RNU6-540P-201ENST00000384622 PCDHGA10Q9Y5H3 936 aa3.03□□□□□ -1.92
RNU6-540P-201ENST00000384622 FBXW7Q969H0 707 aa3.02□□□□□ -1.93
RNU6-540P-201ENST00000384622 PCDHB3Q9Y5E6 796 aa3.02□□□□□ -1.93
RNU6-540P-201ENST00000384622 BMP1P13497 986 aa3.01□□□□□ -1.93
RNU6-540P-201ENST00000384622 KRT76Q01546 638 aa3.01□□□□□ -1.93
RNU6-540P-201ENST00000384622 ZFP64Q9NPA5 681 aa3.01□□□□□ -1.93
RNU6-540P-201ENST00000384622 ARID1BQ8NFD5 2236 aaPredicted RBP3.01□□□□□ -1.93
RNU6-540P-201ENST00000384622 PHF20L1A8MW92 1017 aa3□□□□□ -1.93
RNU6-540P-201ENST00000384622 SMAPO00193 183 aa3□□□□□ -1.93
RNU6-540P-201ENST00000384622 C6orf132Q5T0Z8 1188 aa3□□□□□ -1.93
RNU6-540P-201ENST00000384622 TYW1BQ6NUM6 668 aa3□□□□□ -1.93
RNU6-540P-201ENST00000384622 BLOC1S3Q6QNY0 202 aa3□□□□□ -1.93
RNU6-540P-201ENST00000384622 TRIM46Q7Z4K8 759 aa3□□□□□ -1.93
RNU6-540P-201ENST00000384622 WHAMMQ8TF30 809 aa3□□□□□ -1.93
RNU6-540P-201ENST00000384622 VGFO15240 615 aaPredicted RBP2.99□□□□□ -1.93
RNU6-540P-201ENST00000384622 SLC6A16Q9GZN6 736 aa2.99□□□□□ -1.93
RNU6-540P-201ENST00000384622 RIOK3O14730 519 aaKnown RBP2.98□□□□□ -1.93
RNU6-540P-201ENST00000384622 PAX4O43316 350 aa2.98□□□□□ -1.93
RNU6-540P-201ENST00000384622 ITGB7P26010 798 aa2.98□□□□□ -1.93
RNU6-540P-201ENST00000384622 ZFP42Q96MM3 310 aa2.98□□□□□ -1.93
RNU6-540P-201ENST00000384622 TSKSQ9UJT2 592 aa2.98□□□□□ -1.93
RNU6-540P-201ENST00000384622 ARTNQ5T4W7 220 aa2.97□□□□□ -1.93
RNU6-540P-201ENST00000384622 PRR14Q9BWN1 585 aa2.97□□□□□ -1.93
RNU6-540P-201ENST00000384622 SEMA6BQ9H3T3 888 aa2.97□□□□□ -1.93
RNU6-540P-201ENST00000384622 CNTNAP5Q8WYK1 1306 aa2.96□□□□□ -1.93
RNU6-540P-201ENST00000384622 PPFIA3O75145 1194 aa2.96□□□□□ -1.94
RNU6-540P-201ENST00000384622 ADH1BP00325 375 aa2.96□□□□□ -1.94
RNU6-540P-201ENST00000384622 BEND7Q8N7W2 519 aaPredicted RBP2.96□□□□□ -1.94
RNU6-540P-201ENST00000384622 TRIM41Q8WV44 630 aa2.96□□□□□ -1.94
RNU6-540P-201ENST00000384622 WNT7AO00755 349 aa2.95□□□□□ -1.94
RNU6-540P-201ENST00000384622 PHF14O94880 888 aa2.95□□□□□ -1.94
RNU6-540P-201ENST00000384622 GPR161Q8N6U8 529 aaKnown RBP2.95□□□□□ -1.94
RNU6-540P-201ENST00000384622 CCER1Q8TC90 406 aaPredicted RBP2.95□□□□□ -1.94
RNU6-540P-201ENST00000384622 COL25A1Q9BXS0 654 aaPredicted RBP2.95□□□□□ -1.94
RNU6-540P-201ENST00000384622 SOBPA7XYQ1 873 aa2.94□□□□□ -1.94
RNU6-540P-201ENST00000384622 CAPN5O15484 640 aaPredicted RBP2.94□□□□□ -1.94
RNU6-540P-201ENST00000384622 MAP3K10Q02779 954 aa2.94□□□□□ -1.94
RNU6-540P-201ENST00000384622 SLF2Q8IX21 1173 aa2.94□□□□□ -1.94
RNU6-540P-201ENST00000384622 MRGPRX2Q96LB1 330 aa2.94□□□□□ -1.94
RNU6-540P-201ENST00000384622 BCL11BQ9C0K0 894 aaPredicted RBP2.94□□□□□ -1.94
RNU6-540P-201ENST00000384622 PPP1R37O75864 691 aa2.93□□□□□ -1.94
RNU6-540P-201ENST00000384622 PODNQ7Z5L7 613 aa2.93□□□□□ -1.94
RNU6-540P-201ENST00000384622 ENAMQ9NRM1 1142 aa2.93□□□□□ -1.94
RNU6-540P-201ENST00000384622 ZBTB24O43167 697 aaPredicted RBP2.92□□□□□ -1.94
RNU6-540P-201ENST00000384622 SLC4A3P48751 1232 aa2.92□□□□□ -1.94
RNU6-540P-201ENST00000384622 MCTP1Q6DN14 999 aa2.92□□□□□ -1.94
RNU6-540P-201ENST00000384622 STK24Q9Y6E0 443 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms