RNA–Protein interactions for RNA: ENST00000380833.8

CLCN4-202, Transcript of chloride voltage-gated channel 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN4, Length 6,750 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN4-202ENST00000380833 PRDM10Q9NQV6 1147 aa13.17□□□□□ -0.3
CLCN4-202ENST00000380833 CLGNO14967 610 aa13.17□□□□□ -0.3
CLCN4-202ENST00000380833 KIF3BO15066 747 aa13.17□□□□□ -0.3
CLCN4-202ENST00000380833 IBSPP21815 317 aaPredicted RBP13.17□□□□□ -0.3
CLCN4-202ENST00000380833 PLCD3Q8N3E9 789 aa13.17□□□□□ -0.3
CLCN4-202ENST00000380833 PKD2Q13563 968 aa13.16□□□□□ -0.3
CLCN4-202ENST00000380833 DDX49Q9Y6V7 483 aaKnown RBP13.16□□□□□ -0.3
CLCN4-202ENST00000380833 TPD52L1Q16890 204 aaPredicted RBP13.16□□□□□ -0.3
CLCN4-202ENST00000380833 UQCRHLA0A096LP55 91 aa13.16□□□□□ -0.3
CLCN4-202ENST00000380833 UQCRHP07919 91 aa13.16□□□□□ -0.3
CLCN4-202ENST00000380833 GTF2A1P52655 376 aaPredicted RBP13.16□□□□□ -0.3
CLCN4-202ENST00000380833 KIF3AQ9Y496 699 aa13.16□□□□□ -0.3
CLCN4-202ENST00000380833 KIF16BQ96L93 1317 aa13.16□□□□□ -0.3
CLCN4-202ENST00000380833 TNNT1P13805 278 aa13.16□□□□□ -0.3
CLCN4-202ENST00000380833 CDR1P51861 262 aa13.15□□□□□ -0.3
CLCN4-202ENST00000380833 NFKBIBQ15653 356 aa13.15□□□□□ -0.3
CLCN4-202ENST00000380833 BCL2L13Q9BXK5 485 aa13.15□□□□□ -0.3
CLCN4-202ENST00000380833 DCTN1Q14203 1278 aa13.15□□□□□ -0.3
CLCN4-202ENST00000380833 TRAK1Q9UPV9 953 aa13.15□□□□□ -0.3
CLCN4-202ENST00000380833 PAIP2Q9BPZ3 127 aaKnown RBP13.15□□□□□ -0.31
CLCN4-202ENST00000380833 SF3A1Q15459 793 aaKnown RBP13.14□□□□□ -0.31
CLCN4-202ENST00000380833 NUTM2GQ5VZR2 741 aa13.14□□□□□ -0.31
CLCN4-202ENST00000380833 VPS37DQ86XT2 251 aa13.14□□□□□ -0.31
CLCN4-202ENST00000380833 DCAF8L1A6NGE4 600 aa13.14□□□□□ -0.31
CLCN4-202ENST00000380833 MCTP1Q6DN14 999 aa13.13□□□□□ -0.31
CLCN4-202ENST00000380833 IPO8O15397 1037 aaKnown RBP13.12□□□□□ -0.31
CLCN4-202ENST00000380833 ROCK2O75116 1388 aaKnown RBP13.12□□□□□ -0.31
CLCN4-202ENST00000380833 RBM25P49756 843 aaKnown RBP13.12□□□□□ -0.31
CLCN4-202ENST00000380833 CYB5RLQ6IPT4 315 aa13.12□□□□□ -0.31
CLCN4-202ENST00000380833 PCMTD1Q96MG8 357 aaPredicted RBP13.12□□□□□ -0.31
CLCN4-202ENST00000380833 ERICH4A6NGS2 130 aa13.12□□□□□ -0.31
CLCN4-202ENST00000380833 HNRNPMP52272 730 aaKnown RBP eCLIP13.12□□□□□ -0.31
CLCN4-202ENST00000380833 HSPA5P11021 654 aaKnown RBP13.11□□□□□ -0.31
CLCN4-202ENST00000380833 C1orf141Q5JVX7 400 aa13.11□□□□□ -0.31
CLCN4-202ENST00000380833 INCENPQ9NQS7 918 aa13.11□□□□□ -0.31
CLCN4-202ENST00000380833 PDE4AP27815 886 aa13.11□□□□□ -0.31
CLCN4-202ENST00000380833 MNS1Q8NEH6 495 aa13.11□□□□□ -0.31
CLCN4-202ENST00000380833 PLIN1O60240 522 aa13.1□□□□□ -0.31
CLCN4-202ENST00000380833 CCDC173Q0VFZ6 552 aa13.1□□□□□ -0.31
CLCN4-202ENST00000380833 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.1□□□□□ -0.316e-9■■■■■ 134.6
CLCN4-202ENST00000380833 RUFY1Q96T51 708 aa13.1□□□□□ -0.31
CLCN4-202ENST00000380833 WASHC2CQ9Y4E1 1318 aa13.1□□□□□ -0.31
CLCN4-202ENST00000380833 NOL10Q9BSC4 688 aaKnown RBP13.1□□□□□ -0.31
CLCN4-202ENST00000380833 H3BQV1 296 aa13.1□□□□□ -0.31
CLCN4-202ENST00000380833 IFFO2Q5TF58 517 aa13.1□□□□□ -0.31
CLCN4-202ENST00000380833 KIAA0754O94854 1291 aa13.09□□□□□ -0.31
CLCN4-202ENST00000380833 AKAP17AQ02040 695 aaKnown RBP13.09□□□□□ -0.31
CLCN4-202ENST00000380833 LMOD3Q0VAK6 560 aa13.09□□□□□ -0.31
CLCN4-202ENST00000380833 ERCC4Q92889 916 aaPredicted RBP13.09□□□□□ -0.31
CLCN4-202ENST00000380833 TDO2P48775 406 aa13.09□□□□□ -0.31
CLCN4-202ENST00000380833 NASPP49321 788 aaPredicted RBP13.08□□□□□ -0.32
CLCN4-202ENST00000380833 FAM193AP78312 1265 aa13.08□□□□□ -0.32
CLCN4-202ENST00000380833 RBM28Q9NW13 759 aaKnown RBP13.08□□□□□ -0.32
CLCN4-202ENST00000380833 NUTM2BA6NNL0 878 aaPredicted RBP13.07□□□□□ -0.32
CLCN4-202ENST00000380833 NUTM2EB1AL46 878 aaPredicted RBP13.07□□□□□ -0.32
CLCN4-202ENST00000380833 LETM1O95202 739 aaPredicted RBP13.07□□□□□ -0.32
CLCN4-202ENST00000380833 ZRSR2Q15696 482 aaKnown RBP13.07□□□□□ -0.32
CLCN4-202ENST00000380833 NUTM2AQ8IVF1 878 aaPredicted RBP13.07□□□□□ -0.32
CLCN4-202ENST00000380833 IPO4Q8TEX9 1081 aaKnown RBP13.07□□□□□ -0.32
CLCN4-202ENST00000380833 CEP162Q5TB80 1403 aa13.07□□□□□ -0.32
CLCN4-202ENST00000380833 TIGD1Q96MW7 591 aa13.07□□□□□ -0.32
CLCN4-202ENST00000380833 PDCL2Q8N4E4 241 aa13.07□□□□□ -0.32
CLCN4-202ENST00000380833 EEA1Q15075 1411 aa13.07□□□□□ -0.32
CLCN4-202ENST00000380833 TTC5Q8N0Z6 440 aa13.07□□□□□ -0.32
CLCN4-202ENST00000380833 CCDC43Q96MW1 224 aaKnown RBP13.06□□□□□ -0.32
CLCN4-202ENST00000380833 CCDC27Q2M243 656 aa13.06□□□□□ -0.32
CLCN4-202ENST00000380833 KTN1Q86UP2 1357 aaKnown RBP13.06□□□□□ -0.32
CLCN4-202ENST00000380833 GOLGA6L19H0YKK7 550 aa13.06□□□□□ -0.32
CLCN4-202ENST00000380833 CARMIL2Q6F5E8 1435 aa13.06□□□□□ -0.32
CLCN4-202ENST00000380833 HOMER1Q86YM7 354 aa13.05□□□□□ -0.32
CLCN4-202ENST00000380833 IFT57Q9NWB7 429 aa13.05□□□□□ -0.32
CLCN4-202ENST00000380833 PAF1Q8N7H5 531 aa13.05□□□□□ -0.32
CLCN4-202ENST00000380833 CBX1P83916 185 aa13.05□□□□□ -0.32
CLCN4-202ENST00000380833 FAM184AQ8NB25 1140 aa13.05□□□□□ -0.32
CLCN4-202ENST00000380833 IKQ13123 557 aaPredicted RBP13.05□□□□□ -0.32
CLCN4-202ENST00000380833 PSMD1Q99460 953 aa13.05□□□□□ -0.32
CLCN4-202ENST00000380833 AIMP1Q12904 312 aaKnown RBP13.04□□□□□ -0.32
CLCN4-202ENST00000380833 RBM33Q96EV2 1170 aaKnown RBP13.04□□□□□ -0.32
CLCN4-202ENST00000380833 RWDD1Q9H446 243 aaPredicted RBP13.04□□□□□ -0.32
CLCN4-202ENST00000380833 TMCO5BA8MYB1 307 aa13.04□□□□□ -0.32
CLCN4-202ENST00000380833 DHX37Q8IY37 1157 aaKnown RBP13.04□□□□□ -0.32
CLCN4-202ENST00000380833 CHMP4CQ96CF2 233 aa13.04□□□□□ -0.32
CLCN4-202ENST00000380833 FAM161AQ3B820 660 aa13.04□□□□□ -0.32
CLCN4-202ENST00000380833 MINK1Q8N4C8 1332 aaPredicted RBP13.03□□□□□ -0.32
CLCN4-202ENST00000380833 TMEM132AQ24JP5 1023 aa13.03□□□□□ -0.32
CLCN4-202ENST00000380833 AMOTL1Q8IY63 956 aa13.03□□□□□ -0.32
CLCN4-202ENST00000380833 PIP4K2BP78356 416 aa13.03□□□□□ -0.32
CLCN4-202ENST00000380833 PSME1Q06323 249 aa13.03□□□□□ -0.32
CLCN4-202ENST00000380833 NEXNQ0ZGT2 675 aa13.03□□□□□ -0.32
CLCN4-202ENST00000380833 CCAR1Q8IX12 1150 aaKnown RBP13.03□□□□□ -0.32
CLCN4-202ENST00000380833 CHMP5Q9NZZ3 219 aa13.02□□□□□ -0.32
CLCN4-202ENST00000380833 CT47A1Q5JQC4 288 aaPredicted RBP13.02□□□□□ -0.33
CLCN4-202ENST00000380833 RCAN3Q9UKA8 241 aa13.02□□□□□ -0.33
CLCN4-202ENST00000380833 ZFYVE27Q5T4F4 411 aa13.02□□□□□ -0.33
CLCN4-202ENST00000380833 ESPNB1AK53 854 aa13.02□□□□□ -0.33
CLCN4-202ENST00000380833 TEFQ10587 303 aa13.02□□□□□ -0.33
CLCN4-202ENST00000380833 GOLGA6L7A0A1B0GV03 622 aa13.01□□□□□ -0.33
CLCN4-202ENST00000380833 SMARCA2P51531 1590 aa13.01□□□□□ -0.33
CLCN4-202ENST00000380833 NFXL1Q6ZNB6 911 aa13.01□□□□□ -0.33
CLCN4-202ENST00000380833 DDX11Q96FC9 970 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms