RNA–Protein interactions for RNA: ENST00000380324.7

USP3-202, Transcript of ubiquitin specific peptidase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP3, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-202ENST00000380324 STAC3Q96MF2 364 aa16.43■□□□□ 0.22
USP3-202ENST00000380324 TMF1P82094 1093 aa16.42■□□□□ 0.22
USP3-202ENST00000380324 NOS1P29475 1434 aa16.42■□□□□ 0.22
USP3-202ENST00000380324 PPLO60437 1756 aa16.41■□□□□ 0.22
USP3-202ENST00000380324 SUPT16HQ9Y5B9 1047 aaKnown RBP16.41■□□□□ 0.22
USP3-202ENST00000380324 KIF13AQ9H1H9 1805 aa16.41■□□□□ 0.22
USP3-202ENST00000380324 SYNMO15061 1565 aa16.41■□□□□ 0.22
USP3-202ENST00000380324 CFAP70Q5T0N1 1121 aa16.4■□□□□ 0.22
USP3-202ENST00000380324 PIK3C2BO00750 1634 aa16.38■□□□□ 0.21
USP3-202ENST00000380324 EIF3AQ14152 1382 aaKnown RBP16.38■□□□□ 0.21
USP3-202ENST00000380324 NRXN1Q9ULB1 1477 aa16.37■□□□□ 0.21
USP3-202ENST00000380324 PREX1Q8TCU6 1659 aa16.35■□□□□ 0.21
USP3-202ENST00000380324 KTN1Q86UP2 1357 aaKnown RBP16.35■□□□□ 0.21
USP3-202ENST00000380324 TMC1Q8TDI8 760 aa16.34■□□□□ 0.21
USP3-202ENST00000380324 PANK3Q9H999 370 aa16.34■□□□□ 0.21
USP3-202ENST00000380324 MYO5BQ9ULV0 1848 aa16.34■□□□□ 0.21
USP3-202ENST00000380324 PIK3C2GO75747 1445 aa16.34■□□□□ 0.21
USP3-202ENST00000380324 ARHGAP31Q2M1Z3 1444 aa16.34■□□□□ 0.21
USP3-202ENST00000380324 MYBBP1AQ9BQG0 1328 aaKnown RBP16.34■□□□□ 0.21
USP3-202ENST00000380324 RALBP1Q15311 655 aa16.33■□□□□ 0.2
USP3-202ENST00000380324 KDM5AP29375 1690 aaKnown RBP16.33■□□□□ 0.2
USP3-202ENST00000380324 MYOM1P52179 1685 aa16.33■□□□□ 0.2
USP3-202ENST00000380324 PER1O15534 1290 aaPredicted RBP16.33■□□□□ 0.2
USP3-202ENST00000380324 CC2D1BQ5T0F9 858 aaKnown RBP16.33■□□□□ 0.2
USP3-202ENST00000380324 NUTM2DQ5VT03 806 aaPredicted RBP16.33■□□□□ 0.2
USP3-202ENST00000380324 FKBP8Q14318 412 aa16.32■□□□□ 0.2
USP3-202ENST00000380324 PARD3Q8TEW0 1356 aa16.32■□□□□ 0.2
USP3-202ENST00000380324 NEXMIFQ5QGS0 1516 aa16.31■□□□□ 0.2
USP3-202ENST00000380324 ZBED9Q6R2W3 1325 aa16.31■□□□□ 0.2
USP3-202ENST00000380324 SETBP1Q9Y6X0 1596 aa16.31■□□□□ 0.2
USP3-202ENST00000380324 NEFLP07196 543 aa16.3■□□□□ 0.2
USP3-202ENST00000380324 BCANQ96GW7 911 aa16.3■□□□□ 0.2
USP3-202ENST00000380324 REREQ9P2R6 1566 aa16.3■□□□□ 0.2
USP3-202ENST00000380324 SENP3-EIF4A1A0A087X0R7 540 aa16.29■□□□□ 0.2
USP3-202ENST00000380324 BRD4O60885 1362 aaPredicted RBP16.29■□□□□ 0.2
USP3-202ENST00000380324 CLTCQ00610 1675 aaKnown RBP16.29■□□□□ 0.2
USP3-202ENST00000380324 MYO3AQ8NEV4 1616 aa16.29■□□□□ 0.2
USP3-202ENST00000380324 IDI1Q13907 227 aa16.29■□□□□ 0.2
USP3-202ENST00000380324 CDCA8Q53HL2 280 aa16.29■□□□□ 0.2
USP3-202ENST00000380324 SENP3Q9H4L4 574 aaPredicted RBP16.28■□□□□ 0.2
USP3-202ENST00000380324 ARHGEF40Q8TER5 1519 aa16.28■□□□□ 0.2
USP3-202ENST00000380324 PNISRQ8TF01 805 aaKnown RBP16.28■□□□□ 0.2
USP3-202ENST00000380324 ADGRB1O14514 1584 aa16.27■□□□□ 0.2
USP3-202ENST00000380324 RPGRIP1LQ68CZ1 1315 aa16.27■□□□□ 0.2
USP3-202ENST00000380324 ERVK-7P63135 1459 aa16.27■□□□□ 0.2
USP3-202ENST00000380324 QRICH2Q9H0J4 1663 aa16.27■□□□□ 0.2
USP3-202ENST00000380324 MLECQ14165 292 aa16.27■□□□□ 0.19
USP3-202ENST00000380324 FBXO31Q5XUX0 539 aaPredicted RBP16.27■□□□□ 0.19
USP3-202ENST00000380324 TMEM132EQ6IEE7 984 aa16.27■□□□□ 0.19
USP3-202ENST00000380324 NLRP13Q86W25 1043 aa16.27■□□□□ 0.19
USP3-202ENST00000380324 TRAK1Q9UPV9 953 aa16.27■□□□□ 0.19
USP3-202ENST00000380324 AGLP35573 1532 aa16.26■□□□□ 0.19
USP3-202ENST00000380324 TMEM131LA2VDJ0 1609 aa16.26■□□□□ 0.19
USP3-202ENST00000380324 C14orf93Q9H972 538 aaKnown RBP16.25■□□□□ 0.19
USP3-202ENST00000380324 SLC52A1Q9NWF4 448 aa16.25■□□□□ 0.19
USP3-202ENST00000380324 KNSTRNQ9Y448 316 aa16.24■□□□□ 0.19
USP3-202ENST00000380324 CENPJQ9HC77 1338 aaPredicted RBP16.24■□□□□ 0.19
USP3-202ENST00000380324 VGFO15240 615 aaPredicted RBP16.23■□□□□ 0.19
USP3-202ENST00000380324 LRPPRCP42704 1394 aaKnown RBP16.22■□□□□ 0.19
USP3-202ENST00000380324 ARHGEF28Q8N1W1 1705 aaKnown RBP16.22■□□□□ 0.19
USP3-202ENST00000380324 SBNO2Q9Y2G9 1366 aa16.21■□□□□ 0.19
USP3-202ENST00000380324 ASXL1Q8IXJ9 1541 aa16.2■□□□□ 0.18
USP3-202ENST00000380324 IRX6P78412 446 aaPredicted RBP16.19■□□□□ 0.18
USP3-202ENST00000380324 AMER1Q5JTC6 1135 aaPredicted RBP16.18■□□□□ 0.18
USP3-202ENST00000380324 STAG3Q9UJ98 1225 aa16.18■□□□□ 0.18
USP3-202ENST00000380324 SLC24A1O60721 1099 aa16.18■□□□□ 0.18
USP3-202ENST00000380324 SPATA31D1Q6ZQQ2 1576 aa16.16■□□□□ 0.18
USP3-202ENST00000380324 ZFYVE9O95405 1425 aa16.16■□□□□ 0.18
USP3-202ENST00000380324 PPP6R1Q9UPN7 881 aa16.16■□□□□ 0.18
USP3-202ENST00000380324 SAFB2Q14151 953 aaKnown RBP eCLIP16.14■□□□□ 0.18
USP3-202ENST00000380324 STK26Q9P289 416 aa16.14■□□□□ 0.17
USP3-202ENST00000380324 ESF1Q9H501 851 aaKnown RBP16.13■□□□□ 0.17
USP3-202ENST00000380324 PPP2R1AP30153 589 aa16.13■□□□□ 0.17
USP3-202ENST00000380324 SALL2Q9Y467 1007 aaPredicted RBP16.13■□□□□ 0.17
USP3-202ENST00000380324 TULP4Q9NRJ4 1543 aa16.13■□□□□ 0.17
USP3-202ENST00000380324 SMG6Q86US8 1419 aaKnown RBP16.12■□□□□ 0.17
USP3-202ENST00000380324 PELP1Q8IZL8 1130 aaKnown RBP16.11■□□□□ 0.17
USP3-202ENST00000380324 CARD14Q9BXL6 1004 aa16.11■□□□□ 0.17
USP3-202ENST00000380324 A2ML1A8K2U0 1454 aa16.11■□□□□ 0.17
USP3-202ENST00000380324 NUDCQ9Y266 331 aa16.11■□□□□ 0.17
USP3-202ENST00000380324 ALKQ9UM73 1620 aa16.1■□□□□ 0.17
USP3-202ENST00000380324 NPC1L1Q9UHC9 1359 aa16.09■□□□□ 0.17
USP3-202ENST00000380324 SLC12A5Q9H2X9 1139 aa16.09■□□□□ 0.17
USP3-202ENST00000380324 NSD3Q9BZ95 1437 aa16.09■□□□□ 0.17
USP3-202ENST00000380324 ZMYM3Q14202 1370 aa16.08■□□□□ 0.17
USP3-202ENST00000380324 BLMP54132 1417 aaPredicted RBP16.08■□□□□ 0.17
USP3-202ENST00000380324 PTPRMP28827 1452 aa16.08■□□□□ 0.16
USP3-202ENST00000380324 EVC2Q86UK5 1308 aa16.08■□□□□ 0.16
USP3-202ENST00000380324 YTHDC2Q9H6S0 1430 aaKnown RBP16.07■□□□□ 0.16
USP3-202ENST00000380324 RIMS2Q9UQ26 1411 aa16.07■□□□□ 0.16
USP3-202ENST00000380324 CABP2Q9NPB3 220 aa16.06■□□□□ 0.16
USP3-202ENST00000380324 WDR43Q15061 677 aaKnown RBP eCLIP16.05■□□□□ 0.16
USP3-202ENST00000380324 PRAM1Q96QH2 718 aa16.05■□□□□ 0.16
USP3-202ENST00000380324 ADAMTS8Q9UP79 889 aa16.05■□□□□ 0.16
USP3-202ENST00000380324 SETD1AO15047 1707 aaKnown RBP16.04■□□□□ 0.16
USP3-202ENST00000380324 MINK1Q8N4C8 1332 aaPredicted RBP16.04■□□□□ 0.16
USP3-202ENST00000380324 POGKQ9P215 609 aa16.03■□□□□ 0.16
USP3-202ENST00000380324 SRPK2P78362 688 aaKnown RBP16.03■□□□□ 0.16
USP3-202ENST00000380324 TNRQ92752 1358 aa16.02■□□□□ 0.15
USP3-202ENST00000380324 USP32Q8NFA0 1604 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms