RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 SCAF11Q99590 1463 aaKnown RBP13.21□□□□□ -0.29
TRIM39-202ENST00000376659 ABCC3O15438 1527 aa13.21□□□□□ -0.29
TRIM39-202ENST00000376659 MYBBP1AQ9BQG0 1328 aaKnown RBP13.19□□□□□ -0.3
TRIM39-202ENST00000376659 ERVK-7P63135 1459 aa13.19□□□□□ -0.3
TRIM39-202ENST00000376659 BCANQ96GW7 911 aa13.19□□□□□ -0.3
TRIM39-202ENST00000376659 GLI2P10070 1586 aa13.18□□□□□ -0.3
TRIM39-202ENST00000376659 NEXMIFQ5QGS0 1516 aa13.17□□□□□ -0.3
TRIM39-202ENST00000376659 AFAP1Q8N556 730 aa13.17□□□□□ -0.3
TRIM39-202ENST00000376659 SETD1AO15047 1707 aaKnown RBP13.17□□□□□ -0.3
TRIM39-202ENST00000376659 SPAG9O60271 1321 aaKnown RBP13.16□□□□□ -0.3
TRIM39-202ENST00000376659 PREX1Q8TCU6 1659 aa13.16□□□□□ -0.3
TRIM39-202ENST00000376659 ZNF326Q5BKZ1 582 aaKnown RBP13.16□□□□□ -0.3
TRIM39-202ENST00000376659 CLTCQ00610 1675 aaKnown RBP13.16□□□□□ -0.3
TRIM39-202ENST00000376659 WASHC2CQ9Y4E1 1318 aa13.15□□□□□ -0.3
TRIM39-202ENST00000376659 PIK3C2GO75747 1445 aa13.15□□□□□ -0.3
TRIM39-202ENST00000376659 FAM9BQ8IZU0 186 aa13.15□□□□□ -0.3
TRIM39-202ENST00000376659 RALBP1Q15311 655 aa13.14□□□□□ -0.31
TRIM39-202ENST00000376659 ASXL1Q8IXJ9 1541 aa13.14□□□□□ -0.31
TRIM39-202ENST00000376659 KDM2AQ9Y2K7 1162 aa13.14□□□□□ -0.31
TRIM39-202ENST00000376659 NPATQ14207 1427 aa13.14□□□□□ -0.31
TRIM39-202ENST00000376659 NEO1Q92859 1461 aa13.13□□□□□ -0.31
TRIM39-202ENST00000376659 ANKRD26Q9UPS8 1709 aa13.13□□□□□ -0.31
TRIM39-202ENST00000376659 NOS1P29475 1434 aa13.13□□□□□ -0.31
TRIM39-202ENST00000376659 TMEM131LA2VDJ0 1609 aa13.12□□□□□ -0.31
TRIM39-202ENST00000376659 NPC1L1Q9UHC9 1359 aa13.12□□□□□ -0.31
TRIM39-202ENST00000376659 REREQ9P2R6 1566 aa13.12□□□□□ -0.31
TRIM39-202ENST00000376659 NUDCQ9Y266 331 aa13.12□□□□□ -0.31
TRIM39-202ENST00000376659 SBNO2Q9Y2G9 1366 aa13.11□□□□□ -0.31
TRIM39-202ENST00000376659 RBM19Q9Y4C8 960 aaKnown RBP13.09□□□□□ -0.31
TRIM39-202ENST00000376659 STAC3Q96MF2 364 aa13.09□□□□□ -0.31
TRIM39-202ENST00000376659 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.08□□□□□ -0.321e-6■■■■□ 21.3
TRIM39-202ENST00000376659 DIP2BQ9P265 1576 aa13.08□□□□□ -0.32
TRIM39-202ENST00000376659 IRX6P78412 446 aaPredicted RBP13.08□□□□□ -0.32
TRIM39-202ENST00000376659 TULP4Q9NRJ4 1543 aa13.08□□□□□ -0.32
TRIM39-202ENST00000376659 NEFLP07196 543 aa13.08□□□□□ -0.32
TRIM39-202ENST00000376659 PPP4R2Q9NY27 417 aa13.08□□□□□ -0.32
TRIM39-202ENST00000376659 ARHGAP31Q2M1Z3 1444 aa13.07□□□□□ -0.32
TRIM39-202ENST00000376659 CFAP65Q6ZU64 1925 aaKnown RBP13.07□□□□□ -0.32
TRIM39-202ENST00000376659 AMER1Q5JTC6 1135 aaPredicted RBP13.06□□□□□ -0.32
TRIM39-202ENST00000376659 RGL3Q3MIN7 710 aa13.06□□□□□ -0.32
TRIM39-202ENST00000376659 NLRP13Q86W25 1043 aa13.06□□□□□ -0.32
TRIM39-202ENST00000376659 CD109Q6YHK3 1445 aa13.06□□□□□ -0.32
TRIM39-202ENST00000376659 RIMBP3CA6NJZ7 1639 aa13.05□□□□□ -0.32
TRIM39-202ENST00000376659 RIMBP3BA6NNM3 1639 aa13.05□□□□□ -0.32
TRIM39-202ENST00000376659 RIMBP3Q9UFD9 1639 aa13.05□□□□□ -0.32
TRIM39-202ENST00000376659 VIRMAQ69YN4 1812 aaKnown RBP13.05□□□□□ -0.32
TRIM39-202ENST00000376659 ZNF521Q96K83 1311 aa13.05□□□□□ -0.32
TRIM39-202ENST00000376659 IQSEC2Q5JU85 1478 aa13.04□□□□□ -0.32
TRIM39-202ENST00000376659 MSH5O43196 834 aa13.04□□□□□ -0.32
TRIM39-202ENST00000376659 KANK1Q14678 1352 aa13.03□□□□□ -0.32
TRIM39-202ENST00000376659 KIF13AQ9H1H9 1805 aa13.03□□□□□ -0.32
TRIM39-202ENST00000376659 ADGRF5Q8IZF2 1346 aa13.02□□□□□ -0.32
TRIM39-202ENST00000376659 PANK3Q9H999 370 aa13.02□□□□□ -0.32
TRIM39-202ENST00000376659 ADGRB2O60241 1585 aa13.02□□□□□ -0.32
TRIM39-202ENST00000376659 FANCIQ9NVI1 1328 aa13.02□□□□□ -0.33
TRIM39-202ENST00000376659 NRXN3Q9Y4C0 1643 aa13.01□□□□□ -0.33
TRIM39-202ENST00000376659 TMF1P82094 1093 aa13□□□□□ -0.33
TRIM39-202ENST00000376659 ZFYVE9O95405 1425 aa12.99□□□□□ -0.33
TRIM39-202ENST00000376659 KIF20BQ96Q89 1820 aa12.99□□□□□ -0.33
TRIM39-202ENST00000376659 PLEKHH1Q9ULM0 1364 aa12.99□□□□□ -0.33
TRIM39-202ENST00000376659 EIF3AQ14152 1382 aaKnown RBP12.98□□□□□ -0.33
TRIM39-202ENST00000376659 TMC1Q8TDI8 760 aa12.98□□□□□ -0.33
TRIM39-202ENST00000376659 PTPRMP28827 1452 aa12.98□□□□□ -0.33
TRIM39-202ENST00000376659 KNDC1Q76NI1 1749 aa12.97□□□□□ -0.33
TRIM39-202ENST00000376659 YEATS2Q9ULM3 1422 aa12.97□□□□□ -0.33
TRIM39-202ENST00000376659 KIF3BO15066 747 aa12.97□□□□□ -0.33
TRIM39-202ENST00000376659 AGLP35573 1532 aa12.96□□□□□ -0.33
TRIM39-202ENST00000376659 SPATA31D1Q6ZQQ2 1576 aa12.96□□□□□ -0.33
TRIM39-202ENST00000376659 PPP2R1AP30153 589 aa12.95□□□□□ -0.34
TRIM39-202ENST00000376659 NLRP1Q9C000 1473 aa12.95□□□□□ -0.34
TRIM39-202ENST00000376659 B4GALNT3Q6L9W6 998 aa12.95□□□□□ -0.34
TRIM39-202ENST00000376659 RRP1P56182 461 aaKnown RBP12.95□□□□□ -0.34
TRIM39-202ENST00000376659 PDE3BQ13370 1112 aa12.95□□□□□ -0.34
TRIM39-202ENST00000376659 CD163L1Q9NR16 1453 aa12.94□□□□□ -0.34
TRIM39-202ENST00000376659 CARD14Q9BXL6 1004 aa12.94□□□□□ -0.34
TRIM39-202ENST00000376659 TRMT2AQ8IZ69 625 aaKnown RBP12.94□□□□□ -0.34
TRIM39-202ENST00000376659 POLR3GLQ9BT43 218 aa12.94□□□□□ -0.34
TRIM39-202ENST00000376659 COL3A1P02461 1466 aaPredicted RBP12.94□□□□□ -0.34
TRIM39-202ENST00000376659 CFAP70Q5T0N1 1121 aa12.93□□□□□ -0.34
TRIM39-202ENST00000376659 ANP32EQ9BTT0 268 aa12.93□□□□□ -0.34
TRIM39-202ENST00000376659 CDC42BPGQ6DT37 1551 aa12.92□□□□□ -0.34
TRIM39-202ENST00000376659 CC2D1BQ5T0F9 858 aaKnown RBP12.91□□□□□ -0.34
TRIM39-202ENST00000376659 ARHGEF40Q8TER5 1519 aa12.91□□□□□ -0.34
TRIM39-202ENST00000376659 CDCA7LQ96GN5 454 aa12.91□□□□□ -0.34
TRIM39-202ENST00000376659 C14orf93Q9H972 538 aaKnown RBP12.91□□□□□ -0.34
TRIM39-202ENST00000376659 ALKQ9UM73 1620 aa12.91□□□□□ -0.34
TRIM39-202ENST00000376659 OSCARQ8IYS5 282 aa12.91□□□□□ -0.34
TRIM39-202ENST00000376659 TSPOAP1O95153 1857 aa12.89□□□□□ -0.35
TRIM39-202ENST00000376659 POLR3AO14802 1390 aaPredicted RBP12.89□□□□□ -0.35
TRIM39-202ENST00000376659 ADAMTS8Q9UP79 889 aa12.89□□□□□ -0.35
TRIM39-202ENST00000376659 AKAP12Q02952 1782 aa12.89□□□□□ -0.35
TRIM39-202ENST00000376659 DLC1Q96QB1 1528 aa12.89□□□□□ -0.35
TRIM39-202ENST00000376659 MON2Q7Z3U7 1717 aa12.88□□□□□ -0.35
TRIM39-202ENST00000376659 RPGRIP1LQ68CZ1 1315 aa12.88□□□□□ -0.35
TRIM39-202ENST00000376659 SENP3-EIF4A1A0A087X0R7 540 aa12.88□□□□□ -0.35
TRIM39-202ENST00000376659 MED14O60244 1454 aa12.88□□□□□ -0.35
TRIM39-202ENST00000376659 DUSP27Q5VZP5 1158 aa12.87□□□□□ -0.35
TRIM39-202ENST00000376659 NRKQ7Z2Y5 1582 aa12.87□□□□□ -0.35
TRIM39-202ENST00000376659 TOPAZ1Q8N9V7 1692 aa12.87□□□□□ -0.35
TRIM39-202ENST00000376659 RCAN3Q9UKA8 241 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms