RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 FOXD4L3Q6VB84 417 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-202ENST00000375405 SPATA24Q86W54 205 aa5.65□□□□□ -1.51
SCN1A-202ENST00000375405 NGEFQ8N5V2 710 aa5.65□□□□□ -1.51
SCN1A-202ENST00000375405 ARGLU1Q9NWB6 273 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-202ENST00000375405 MYO6Q9UM54 1294 aa5.65□□□□□ -1.51
SCN1A-202ENST00000375405 KNSTRNQ9Y448 316 aa5.64□□□□□ -1.51
SCN1A-202ENST00000375405 GTPBP4Q9BZE4 634 aaKnown RBP5.64□□□□□ -1.51
SCN1A-202ENST00000375405 TRIM21P19474 475 aaKnown RBP5.64□□□□□ -1.51
SCN1A-202ENST00000375405 TAX1BP1Q86VP1 789 aa5.64□□□□□ -1.51
SCN1A-202ENST00000375405 FAM184AQ8NB25 1140 aa5.64□□□□□ -1.51
SCN1A-202ENST00000375405 CAGE1Q8TC20 777 aa5.64□□□□□ -1.51
SCN1A-202ENST00000375405 BIRC2Q13490 618 aa5.64□□□□□ -1.51
SCN1A-202ENST00000375405 SART3Q15020 963 aaKnown RBP5.64□□□□□ -1.51
SCN1A-202ENST00000375405 TCHPQ9BT92 498 aa5.64□□□□□ -1.51
SCN1A-202ENST00000375405 SERPINA10Q9UK55 444 aa5.64□□□□□ -1.51
SCN1A-202ENST00000375405 GOLGA6L10A0A0M3HER8 536 aa5.64□□□□□ -1.51
SCN1A-202ENST00000375405 GOLGA6L10A6NI86 522 aa5.64□□□□□ -1.51
SCN1A-202ENST00000375405 CFAP57Q96MR6 1250 aa5.64□□□□□ -1.51
SCN1A-202ENST00000375405 STAMBPO95630 424 aa5.64□□□□□ -1.51
SCN1A-202ENST00000375405 TRIM29Q14134 588 aa5.64□□□□□ -1.51
SCN1A-202ENST00000375405 LRSAM1Q6UWE0 723 aa5.64□□□□□ -1.51
SCN1A-202ENST00000375405 BANK1Q8NDB2 785 aa5.64□□□□□ -1.51
SCN1A-202ENST00000375405 ATP2B2Q01814 1243 aa5.63□□□□□ -1.51
SCN1A-202ENST00000375405 SH3BP5O60239 455 aa5.63□□□□□ -1.51
SCN1A-202ENST00000375405 WDHD1O75717 1129 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-202ENST00000375405 SMC1AQ14683 1233 aaKnown RBP5.63□□□□□ -1.51
SCN1A-202ENST00000375405 PPP1R9BQ96SB3 815 aa5.63□□□□□ -1.51
SCN1A-202ENST00000375405 DESP17661 470 aa5.63□□□□□ -1.51
SCN1A-202ENST00000375405 CSPP1Q1MSJ5 1256 aa5.63□□□□□ -1.51
SCN1A-202ENST00000375405 TIGD1Q96MW7 591 aa5.63□□□□□ -1.51
SCN1A-202ENST00000375405 ARL1P40616 181 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-202ENST00000375405 CIZ1Q9ULV3 898 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-202ENST00000375405 FAM161AQ3B820 660 aa5.62□□□□□ -1.51
SCN1A-202ENST00000375405 SCLT1Q96NL6 688 aa5.62□□□□□ -1.51
SCN1A-202ENST00000375405 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.62□□□□□ -1.51
SCN1A-202ENST00000375405 KIF16BQ96L93 1317 aa5.62□□□□□ -1.51
SCN1A-202ENST00000375405 BECN2A8MW95 431 aa5.62□□□□□ -1.51
SCN1A-202ENST00000375405 SSX2IPQ9Y2D8 614 aa5.62□□□□□ -1.51
SCN1A-202ENST00000375405 TSPY4P0CV99 314 aa5.62□□□□□ -1.51
SCN1A-202ENST00000375405 TSPY10P0CW01 314 aa5.62□□□□□ -1.51
SCN1A-202ENST00000375405 RALBP1Q15311 655 aa5.62□□□□□ -1.51
SCN1A-202ENST00000375405 SSR1P43307 286 aaKnown RBP5.62□□□□□ -1.51
SCN1A-202ENST00000375405 TTLL12Q14166 644 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-202ENST00000375405 CCDC27Q2M243 656 aa5.62□□□□□ -1.51
SCN1A-202ENST00000375405 CPLX3Q8WVH0 158 aa5.62□□□□□ -1.51
SCN1A-202ENST00000375405 GBP4Q96PP9 640 aa5.62□□□□□ -1.51
SCN1A-202ENST00000375405 KDM4AO75164 1064 aa5.61□□□□□ -1.51
SCN1A-202ENST00000375405 LTV1Q96GA3 475 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-202ENST00000375405 KIF3AQ9Y496 699 aa5.61□□□□□ -1.51
SCN1A-202ENST00000375405 EIF3JO75822 258 aaKnown RBP5.61□□□□□ -1.51
SCN1A-202ENST00000375405 BMS1Q14692 1282 aaKnown RBP5.61□□□□□ -1.51
SCN1A-202ENST00000375405 SLC4A10Q6U841 1118 aa5.61□□□□□ -1.51
SCN1A-202ENST00000375405 NFXL1Q6ZNB6 911 aa5.61□□□□□ -1.51
SCN1A-202ENST00000375405 GON4LQ3T8J9 2241 aa5.61□□□□□ -1.51
SCN1A-202ENST00000375405 KIF3BO15066 747 aa5.61□□□□□ -1.51
SCN1A-202ENST00000375405 FOSBP53539 338 aa5.61□□□□□ -1.51
SCN1A-202ENST00000375405 RNF20Q5VTR2 975 aa5.61□□□□□ -1.51
SCN1A-202ENST00000375405 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-202ENST00000375405 TTC36A6NLP5 189 aa5.61□□□□□ -1.51
SCN1A-202ENST00000375405 RNF187Q5TA31 235 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-202ENST00000375405 CCDC181Q5TID7 509 aa5.61□□□□□ -1.51
SCN1A-202ENST00000375405 FEZ1Q99689 392 aa5.61□□□□□ -1.51
SCN1A-202ENST00000375405 PPP4R4Q6NUP7 873 aa5.61□□□□□ -1.51
SCN1A-202ENST00000375405 CENPHQ9H3R5 247 aa5.6□□□□□ -1.51
SCN1A-202ENST00000375405 LETM1O95202 739 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-202ENST00000375405 CCDC89Q8N998 374 aa5.6□□□□□ -1.51
SCN1A-202ENST00000375405 INCENPQ9NQS7 918 aa5.6□□□□□ -1.51
SCN1A-202ENST00000375405 EP400NLQ6ZTU2 488 aa5.6□□□□□ -1.51
SCN1A-202ENST00000375405 CHMP7Q8WUX9 453 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-202ENST00000375405 ERICH2A1L162 156 aa5.6□□□□□ -1.51
SCN1A-202ENST00000375405 ATP6V1E1P36543 226 aa5.6□□□□□ -1.51
SCN1A-202ENST00000375405 XPCQ01831 940 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-202ENST00000375405 SEPT8Q92599 483 aa5.6□□□□□ -1.51
SCN1A-202ENST00000375405 RBM5P52756 815 aaKnown RBP eCLIP5.6□□□□□ -1.51
SCN1A-202ENST00000375405 DNAJC2Q99543 621 aaKnown RBP5.6□□□□□ -1.51
SCN1A-202ENST00000375405 SLU7O95391 586 aaKnown RBP5.59□□□□□ -1.51
SCN1A-202ENST00000375405 ZNF354CQ86Y25 554 aa5.59□□□□□ -1.51
SCN1A-202ENST00000375405 C16orf71Q8IYS4 520 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-202ENST00000375405 PRPF31Q8WWY3 499 aaKnown RBP5.59□□□□□ -1.51
SCN1A-202ENST00000375405 VTI1AQ96AJ9 217 aa5.59□□□□□ -1.51
SCN1A-202ENST00000375405 MRVI1Q9Y6F6 885 aa5.59□□□□□ -1.51
SCN1A-202ENST00000375405 IPO8O15397 1037 aaKnown RBP5.59□□□□□ -1.51
SCN1A-202ENST00000375405 KIF20AO95235 890 aa5.59□□□□□ -1.51
SCN1A-202ENST00000375405 KRT18P05783 430 aaKnown RBP5.59□□□□□ -1.51
SCN1A-202ENST00000375405 ACRBPQ8NEB7 543 aa5.59□□□□□ -1.51
SCN1A-202ENST00000375405 IL27Q8NEV9 243 aa5.59□□□□□ -1.51
SCN1A-202ENST00000375405 ZNF526Q8TF50 670 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-202ENST00000375405 ZHX3Q9H4I2 956 aa5.59□□□□□ -1.51
SCN1A-202ENST00000375405 ZNHIT6Q9NWK9 470 aaKnown RBP5.59□□□□□ -1.51
SCN1A-202ENST00000375405 TIMELESSQ9UNS1 1208 aa5.59□□□□□ -1.51
SCN1A-202ENST00000375405 CC2D1BQ5T0F9 858 aaKnown RBP5.59□□□□□ -1.51
SCN1A-202ENST00000375405 CCDC146Q8IYE0 955 aa5.59□□□□□ -1.51
SCN1A-202ENST00000375405 PDILTQ8N807 584 aa5.59□□□□□ -1.51
SCN1A-202ENST00000375405 CCDC39Q9UFE4 941 aa5.59□□□□□ -1.51
SCN1A-202ENST00000375405 TMCO4Q5TGY1 634 aa5.59□□□□□ -1.52
SCN1A-202ENST00000375405 RBM28Q9NW13 759 aaKnown RBP5.59□□□□□ -1.52
SCN1A-202ENST00000375405 STK26Q9P289 416 aa5.59□□□□□ -1.52
SCN1A-202ENST00000375405 TAF3Q5VWG9 929 aa5.58□□□□□ -1.52
SCN1A-202ENST00000375405 HOOK1Q9UJC3 728 aaKnown RBP5.58□□□□□ -1.52
SCN1A-202ENST00000375405 ERLIN2O94905 339 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms