RNA–Protein interactions for RNA: ENST00000374487.6

HMGCL-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 2

Gene HMGCL, Length 2,151 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-202ENST00000374487 SUPT16HQ9Y5B9 1047 aaKnown RBP16.71■□□□□ 0.27
HMGCL-202ENST00000374487 NLRP1Q9C000 1473 aa16.71■□□□□ 0.27
HMGCL-202ENST00000374487 KIF7Q2M1P5 1343 aa16.7■□□□□ 0.26
HMGCL-202ENST00000374487 KDM2AQ9Y2K7 1162 aa16.7■□□□□ 0.26
HMGCL-202ENST00000374487 USP47Q96K76 1375 aa16.69■□□□□ 0.26
HMGCL-202ENST00000374487 DCAF11Q8TEB1 546 aa16.69■□□□□ 0.26
HMGCL-202ENST00000374487 PIK3C2BO00750 1634 aa16.69■□□□□ 0.26
HMGCL-202ENST00000374487 THEMISQ8N1K5 641 aaPredicted RBP16.68■□□□□ 0.26
HMGCL-202ENST00000374487 PLA2R1Q13018 1463 aa16.67■□□□□ 0.26
HMGCL-202ENST00000374487 CHGAP10645 457 aaKnown RBP16.67■□□□□ 0.26
HMGCL-202ENST00000374487 LTKP29376 864 aa16.67■□□□□ 0.26
HMGCL-202ENST00000374487 CARD11Q9BXL7 1154 aa16.67■□□□□ 0.26
HMGCL-202ENST00000374487 STAG3Q9UJ98 1225 aa16.67■□□□□ 0.26
HMGCL-202ENST00000374487 CCDC144AA2RUR9 1427 aa16.66■□□□□ 0.26
HMGCL-202ENST00000374487 UBR1Q8IWV7 1749 aa16.66■□□□□ 0.26
HMGCL-202ENST00000374487 NUTM2DQ5VT03 806 aaPredicted RBP16.65■□□□□ 0.26
HMGCL-202ENST00000374487 POLR3GLQ9BT43 218 aa16.65■□□□□ 0.26
HMGCL-202ENST00000374487 PRKRIP1Q9H875 184 aaPredicted RBP16.65■□□□□ 0.26
HMGCL-202ENST00000374487 RALGAPBQ86X10 1494 aa16.64■□□□□ 0.25
HMGCL-202ENST00000374487 ANKLE2Q86XL3 938 aa16.63■□□□□ 0.25
HMGCL-202ENST00000374487 SLC52A1Q9NWF4 448 aa16.63■□□□□ 0.25
HMGCL-202ENST00000374487 HNRNPUQ00839 825 aaKnown RBP eCLIP16.62■□□□□ 0.25
HMGCL-202ENST00000374487 TXNDC2Q86VQ3 553 aa16.62■□□□□ 0.25
HMGCL-202ENST00000374487 NEURL4Q96JN8 1562 aa16.62■□□□□ 0.25
HMGCL-202ENST00000374487 RGL3Q3MIN7 710 aa16.61■□□□□ 0.25
HMGCL-202ENST00000374487 PTPRTO14522 1441 aa16.6■□□□□ 0.25
HMGCL-202ENST00000374487 ZNF335Q9H4Z2 1342 aaPredicted RBP16.6■□□□□ 0.25
HMGCL-202ENST00000374487 TMEM2Q9UHN6 1383 aa16.6■□□□□ 0.25
HMGCL-202ENST00000374487 MYO5BQ9ULV0 1848 aa16.59■□□□□ 0.25
HMGCL-202ENST00000374487 DMRT2Q9Y5R5 561 aa16.59■□□□□ 0.25
HMGCL-202ENST00000374487 POLR1AO95602 1720 aaPredicted RBP16.59■□□□□ 0.25
HMGCL-202ENST00000374487 ROCK2O75116 1388 aaKnown RBP16.58■□□□□ 0.25
HMGCL-202ENST00000374487 MRS2Q9HD23 443 aa16.58■□□□□ 0.25
HMGCL-202ENST00000374487 ADGRB3O60242 1522 aa16.58■□□□□ 0.24
HMGCL-202ENST00000374487 NEFLP07196 543 aa16.58■□□□□ 0.24
HMGCL-202ENST00000374487 SPHKAPQ2M3C7 1700 aa16.58■□□□□ 0.24
HMGCL-202ENST00000374487 TMEM131LA2VDJ0 1609 aa16.57■□□□□ 0.24
HMGCL-202ENST00000374487 ARHGAP23Q9P227 1491 aa16.57■□□□□ 0.24
HMGCL-202ENST00000374487 ST20-MTHFSA0A0A6YYL1 179 aa16.57■□□□□ 0.24
HMGCL-202ENST00000374487 FKBP8Q14318 412 aa16.57■□□□□ 0.24
HMGCL-202ENST00000374487 CCDC184Q52MB2 194 aa16.57■□□□□ 0.24
HMGCL-202ENST00000374487 NPHP4O75161 1426 aaPredicted RBP16.56■□□□□ 0.24
HMGCL-202ENST00000374487 CLTCL1P53675 1640 aa16.56■□□□□ 0.24
HMGCL-202ENST00000374487 SLIT1O75093 1534 aa16.56■□□□□ 0.24
HMGCL-202ENST00000374487 FAM9BQ8IZU0 186 aa16.55■□□□□ 0.24
HMGCL-202ENST00000374487 SCAF11Q99590 1463 aaKnown RBP16.54■□□□□ 0.24
HMGCL-202ENST00000374487 SLC26A8Q96RN1 970 aa16.54■□□□□ 0.24
HMGCL-202ENST00000374487 CNGB1Q14028 1251 aaPredicted RBP16.54■□□□□ 0.24
HMGCL-202ENST00000374487 EID1Q9Y6B2 187 aa16.54■□□□□ 0.24
HMGCL-202ENST00000374487 PRAG1Q86YV5 1406 aa16.53■□□□□ 0.24
HMGCL-202ENST00000374487 RIMS2Q9UQ26 1411 aa16.53■□□□□ 0.24
HMGCL-202ENST00000374487 TRPM2O94759 1503 aa16.53■□□□□ 0.24
HMGCL-202ENST00000374487 ZFYVE9O95405 1425 aa16.52■□□□□ 0.24
HMGCL-202ENST00000374487 MED14O60244 1454 aa16.52■□□□□ 0.23
HMGCL-202ENST00000374487 BCANQ96GW7 911 aa16.51■□□□□ 0.23
HMGCL-202ENST00000374487 IQGAP1P46940 1657 aa16.5■□□□□ 0.23
HMGCL-202ENST00000374487 LTBP4Q8N2S1 1624 aa16.49■□□□□ 0.23
HMGCL-202ENST00000374487 KDM5AP29375 1690 aaKnown RBP16.49■□□□□ 0.23
HMGCL-202ENST00000374487 NBPF1Q3BBV0 1214 aa16.49■□□□□ 0.23
HMGCL-202ENST00000374487 CERKQ8TCT0 537 aa16.49■□□□□ 0.23
HMGCL-202ENST00000374487 RBM33Q96EV2 1170 aaKnown RBP16.47■□□□□ 0.23
HMGCL-202ENST00000374487 TRPM1Q7Z4N2 1603 aa16.46■□□□□ 0.23
HMGCL-202ENST00000374487 GPRASP1Q5JY77 1395 aa16.44■□□□□ 0.22
HMGCL-202ENST00000374487 STRCP1A6NGW2 1772 aa16.44■□□□□ 0.22
HMGCL-202ENST00000374487 ILDR1Q86SU0 546 aaPredicted RBP16.43■□□□□ 0.22
HMGCL-202ENST00000374487 PLEKHG1Q9ULL1 1385 aa16.43■□□□□ 0.22
HMGCL-202ENST00000374487 NEXMIFQ5QGS0 1516 aa16.42■□□□□ 0.22
HMGCL-202ENST00000374487 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.42■□□□□ 0.22
HMGCL-202ENST00000374487 KIF1BO60333 1816 aa16.42■□□□□ 0.22
HMGCL-202ENST00000374487 ADAMTS13Q76LX8 1427 aa16.41■□□□□ 0.22
HMGCL-202ENST00000374487 ZBED9Q6R2W3 1325 aa16.41■□□□□ 0.22
HMGCL-202ENST00000374487 TMC1Q8TDI8 760 aa16.41■□□□□ 0.22
HMGCL-202ENST00000374487 HDGFP51858 240 aaKnown RBP16.4■□□□□ 0.22
HMGCL-202ENST00000374487 ADGRF5Q8IZF2 1346 aa16.39■□□□□ 0.21
HMGCL-202ENST00000374487 STAC3Q96MF2 364 aa16.38■□□□□ 0.21
HMGCL-202ENST00000374487 RALBP1Q15311 655 aa16.38■□□□□ 0.21
HMGCL-202ENST00000374487 KTN1Q86UP2 1357 aaKnown RBP16.38■□□□□ 0.21
HMGCL-202ENST00000374487 NRXN3Q9Y4C0 1643 aa16.37■□□□□ 0.21
HMGCL-202ENST00000374487 TMF1P82094 1093 aa16.37■□□□□ 0.21
HMGCL-202ENST00000374487 TESK2Q96S53 571 aa16.37■□□□□ 0.21
HMGCL-202ENST00000374487 LAMC1P11047 1609 aa16.36■□□□□ 0.21
HMGCL-202ENST00000374487 METP08581 1390 aa16.36■□□□□ 0.21
HMGCL-202ENST00000374487 TBX22Q9Y458 520 aa16.36■□□□□ 0.21
HMGCL-202ENST00000374487 MYBBP1AQ9BQG0 1328 aaKnown RBP16.35■□□□□ 0.21
HMGCL-202ENST00000374487 LRRC7Q96NW7 1537 aa16.35■□□□□ 0.21
HMGCL-202ENST00000374487 KCNA6P17658 529 aa16.35■□□□□ 0.21
HMGCL-202ENST00000374487 PTPRUQ92729 1446 aa16.35■□□□□ 0.21
HMGCL-202ENST00000374487 VGFO15240 615 aaPredicted RBP16.34■□□□□ 0.21
HMGCL-202ENST00000374487 PNISRQ8TF01 805 aaKnown RBP16.34■□□□□ 0.21
HMGCL-202ENST00000374487 FBXO41Q8TF61 875 aa16.33■□□□□ 0.2
HMGCL-202ENST00000374487 DISP3Q9P2K9 1392 aa16.33■□□□□ 0.2
HMGCL-202ENST00000374487 PPLO60437 1756 aa16.33■□□□□ 0.2
HMGCL-202ENST00000374487 RPGRIP1LQ68CZ1 1315 aa16.32■□□□□ 0.2
HMGCL-202ENST00000374487 PROSER2Q86WR7 435 aaPredicted RBP16.32■□□□□ 0.2
HMGCL-202ENST00000374487 IRX6P78412 446 aaPredicted RBP16.31■□□□□ 0.2
HMGCL-202ENST00000374487 AMOTL2Q9Y2J4 779 aa16.31■□□□□ 0.2
HMGCL-202ENST00000374487 BRD4O60885 1362 aaPredicted RBP16.31■□□□□ 0.2
HMGCL-202ENST00000374487 CPS1P31327 1500 aa16.31■□□□□ 0.2
HMGCL-202ENST00000374487 SETBP1Q9Y6X0 1596 aa16.31■□□□□ 0.2
HMGCL-202ENST00000374487 UBAP1LF5GYI3 381 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 201.7 ms