RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ADGRB3O60242 1522 aa20.29■□□□□ 0.84
HMGA1-203ENST00000374116 KIF1BO60333 1816 aa20.29■□□□□ 0.84
HMGA1-203ENST00000374116 THEMISQ8N1K5 641 aaPredicted RBP20.29■□□□□ 0.84
HMGA1-203ENST00000374116 NCKAP5LQ9HCH0 1330 aa20.27■□□□□ 0.84
HMGA1-203ENST00000374116 LTKP29376 864 aa20.25■□□□□ 0.83
HMGA1-203ENST00000374116 ILDR1Q86SU0 546 aaPredicted RBP20.25■□□□□ 0.83
HMGA1-203ENST00000374116 PPP1R15AO75807 674 aaPredicted RBP20.24■□□□□ 0.83
HMGA1-203ENST00000374116 TMEM2Q9UHN6 1383 aa20.23■□□□□ 0.83
HMGA1-203ENST00000374116 TXNDC2Q86VQ3 553 aa20.23■□□□□ 0.83
HMGA1-203ENST00000374116 SPATA31E1Q6ZUB1 1445 aa20.22■□□□□ 0.83
HMGA1-203ENST00000374116 STRCQ7RTU9 1775 aa20.21■□□□□ 0.83
HMGA1-203ENST00000374116 KDM5AP29375 1690 aaKnown RBP20.21■□□□□ 0.83
HMGA1-203ENST00000374116 RIMS2Q9UQ26 1411 aa20.2■□□□□ 0.82
HMGA1-203ENST00000374116 ANKLE2Q86XL3 938 aa20.2■□□□□ 0.82
HMGA1-203ENST00000374116 KDM2AQ9Y2K7 1162 aa20.18■□□□□ 0.82
HMGA1-203ENST00000374116 ARHGAP23Q9P227 1491 aa20.18■□□□□ 0.82
HMGA1-203ENST00000374116 SLIT1O75093 1534 aa20.18■□□□□ 0.82
HMGA1-203ENST00000374116 ZFYVE9O95405 1425 aa20.18■□□□□ 0.82
HMGA1-203ENST00000374116 EID1Q9Y6B2 187 aa20.18■□□□□ 0.82
HMGA1-203ENST00000374116 NEXMIFQ5QGS0 1516 aa20.16■□□□□ 0.82
HMGA1-203ENST00000374116 BCANQ96GW7 911 aa20.16■□□□□ 0.82
HMGA1-203ENST00000374116 SCAF11Q99590 1463 aaKnown RBP20.16■□□□□ 0.82
HMGA1-203ENST00000374116 DCAF11Q8TEB1 546 aa20.16■□□□□ 0.82
HMGA1-203ENST00000374116 POLR1AO95602 1720 aaPredicted RBP20.15■□□□□ 0.82
HMGA1-203ENST00000374116 NEURL4Q96JN8 1562 aa20.15■□□□□ 0.82
HMGA1-203ENST00000374116 TONSLQ96HA7 1378 aa20.15■□□□□ 0.82
HMGA1-203ENST00000374116 PPLO60437 1756 aa20.13■□□□□ 0.81
HMGA1-203ENST00000374116 ADGRF5Q8IZF2 1346 aa20.13■□□□□ 0.81
HMGA1-203ENST00000374116 SLC26A8Q96RN1 970 aa20.12■□□□□ 0.81
HMGA1-203ENST00000374116 L3MBTL2Q969R5 705 aa20.11■□□□□ 0.81
HMGA1-203ENST00000374116 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.1■□□□□ 0.81
HMGA1-203ENST00000374116 IFT172Q9UG01 1749 aa20.1■□□□□ 0.81
HMGA1-203ENST00000374116 NPHP4O75161 1426 aaPredicted RBP20.1■□□□□ 0.81
HMGA1-203ENST00000374116 HDGFP51858 240 aaKnown RBP20.09■□□□□ 0.81
HMGA1-203ENST00000374116 RPGRIP1LQ68CZ1 1315 aa20.09■□□□□ 0.81
HMGA1-203ENST00000374116 IQGAP1P46940 1657 aa20.08■□□□□ 0.81
HMGA1-203ENST00000374116 VGFO15240 615 aaPredicted RBP20.08■□□□□ 0.8
HMGA1-203ENST00000374116 YTHDC1Q96MU7 727 aaKnown RBP20.06■□□□□ 0.8
HMGA1-203ENST00000374116 PLEKHG1Q9ULL1 1385 aa20.06■□□□□ 0.8
HMGA1-203ENST00000374116 MED14O60244 1454 aa20.06■□□□□ 0.8
HMGA1-203ENST00000374116 NRXN3Q9Y4C0 1643 aa20.04■□□□□ 0.8
HMGA1-203ENST00000374116 ADAMTS13Q76LX8 1427 aa20.02■□□□□ 0.8
HMGA1-203ENST00000374116 DMRT2Q9Y5R5 561 aa20.02■□□□□ 0.79
HMGA1-203ENST00000374116 CFAP70Q5T0N1 1121 aa20.01■□□□□ 0.79
HMGA1-203ENST00000374116 ZNF335Q9H4Z2 1342 aaPredicted RBP20.01■□□□□ 0.79
HMGA1-203ENST00000374116 MYOM2P54296 1465 aa20■□□□□ 0.79
HMGA1-203ENST00000374116 PIK3C2GO75747 1445 aa19.99■□□□□ 0.79
HMGA1-203ENST00000374116 TMEM132EQ6IEE7 984 aa19.99■□□□□ 0.79
HMGA1-203ENST00000374116 METP08581 1390 aa19.98■□□□□ 0.79
HMGA1-203ENST00000374116 SETBP1Q9Y6X0 1596 aa19.98■□□□□ 0.79
HMGA1-203ENST00000374116 ALKQ9UM73 1620 aa19.97■□□□□ 0.79
HMGA1-203ENST00000374116 NBPF8Q3BBV2 869 aa19.97■□□□□ 0.79
HMGA1-203ENST00000374116 NRXN1Q9ULB1 1477 aa19.97■□□□□ 0.79
HMGA1-203ENST00000374116 PRAG1Q86YV5 1406 aa19.95■□□□□ 0.78
HMGA1-203ENST00000374116 RBM33Q96EV2 1170 aaKnown RBP19.95■□□□□ 0.78
HMGA1-203ENST00000374116 TBX22Q9Y458 520 aa19.95■□□□□ 0.78
HMGA1-203ENST00000374116 ANP32EQ9BTT0 268 aa19.94■□□□□ 0.78
HMGA1-203ENST00000374116 SETD1AO15047 1707 aaKnown RBP19.94■□□□□ 0.78
HMGA1-203ENST00000374116 STRCP1A6NGW2 1772 aa19.93■□□□□ 0.78
HMGA1-203ENST00000374116 NBPF1Q3BBV0 1214 aa19.93■□□□□ 0.78
HMGA1-203ENST00000374116 C14orf93Q9H972 538 aaKnown RBP19.93■□□□□ 0.78
HMGA1-203ENST00000374116 STK26Q9P289 416 aa19.92■□□□□ 0.78
HMGA1-203ENST00000374116 PTPRUQ92729 1446 aa19.92■□□□□ 0.78
HMGA1-203ENST00000374116 FBXO41Q8TF61 875 aa19.91■□□□□ 0.78
HMGA1-203ENST00000374116 ASXL1Q8IXJ9 1541 aa19.9■□□□□ 0.78
HMGA1-203ENST00000374116 KCNA6P17658 529 aa19.9■□□□□ 0.78
HMGA1-203ENST00000374116 AMOTL2Q9Y2J4 779 aa19.9■□□□□ 0.78
HMGA1-203ENST00000374116 DIP2AQ14689 1571 aa19.89■□□□□ 0.77
HMGA1-203ENST00000374116 STAC3Q96MF2 364 aa19.89■□□□□ 0.77
HMGA1-203ENST00000374116 CHD2O14647 1828 aaKnown RBP19.88■□□□□ 0.77
HMGA1-203ENST00000374116 DDX10Q13206 875 aaKnown RBP19.88■□□□□ 0.77
HMGA1-203ENST00000374116 BCL11AQ9H165 835 aa19.88■□□□□ 0.77
HMGA1-203ENST00000374116 TRPM1Q7Z4N2 1603 aa19.85■□□□□ 0.77
HMGA1-203ENST00000374116 HIRIP3Q9BW71 556 aaPredicted RBP19.85■□□□□ 0.77
HMGA1-203ENST00000374116 TRAK1Q9UPV9 953 aa19.85■□□□□ 0.77
HMGA1-203ENST00000374116 ADGRB1O14514 1584 aa19.84■□□□□ 0.77
HMGA1-203ENST00000374116 LAMC1P11047 1609 aa19.84■□□□□ 0.77
HMGA1-203ENST00000374116 LTBP4Q8N2S1 1624 aa19.83■□□□□ 0.77
HMGA1-203ENST00000374116 YTHDC2Q9H6S0 1430 aaKnown RBP19.83■□□□□ 0.76
HMGA1-203ENST00000374116 ROCK2O75116 1388 aaKnown RBP19.82■□□□□ 0.76
HMGA1-203ENST00000374116 SAFB2Q14151 953 aaKnown RBP eCLIP19.82■□□□□ 0.76
HMGA1-203ENST00000374116 PROSER2Q86WR7 435 aaPredicted RBP19.82■□□□□ 0.76
HMGA1-203ENST00000374116 WAPLQ7Z5K2 1190 aa19.81■□□□□ 0.76
HMGA1-203ENST00000374116 PIK3R4Q99570 1358 aa19.81■□□□□ 0.76
HMGA1-203ENST00000374116 ROBO2Q9HCK4 1378 aa19.81■□□□□ 0.76
HMGA1-203ENST00000374116 XRN1Q8IZH2 1706 aaKnown RBP19.81■□□□□ 0.76
HMGA1-203ENST00000374116 SUPT16HQ9Y5B9 1047 aaKnown RBP19.81■□□□□ 0.76
HMGA1-203ENST00000374116 NWD1Q149M9 1564 aa19.8■□□□□ 0.76
HMGA1-203ENST00000374116 KIAA1210Q9ULL0 1709 aa19.8■□□□□ 0.76
HMGA1-203ENST00000374116 LRPPRCP42704 1394 aaKnown RBP19.79■□□□□ 0.76
HMGA1-203ENST00000374116 HSPA5P11021 654 aaKnown RBP19.79■□□□□ 0.76
HMGA1-203ENST00000374116 PLEKHH1Q9ULM0 1364 aa19.78■□□□□ 0.76
HMGA1-203ENST00000374116 CARD11Q9BXL7 1154 aa19.78■□□□□ 0.76
HMGA1-203ENST00000374116 LRRC7Q96NW7 1537 aa19.78■□□□□ 0.76
HMGA1-203ENST00000374116 TMEM94Q12767 1356 aa19.77■□□□□ 0.76
HMGA1-203ENST00000374116 EIF4G2P78344 907 aaKnown RBP eCLIP19.77■□□□□ 0.76
HMGA1-203ENST00000374116 TSHZ2Q9NRE2 1034 aa19.76■□□□□ 0.75
HMGA1-203ENST00000374116 RALGAPBQ86X10 1494 aa19.76■□□□□ 0.75
HMGA1-203ENST00000374116 XIRP1Q702N8 1843 aaKnown RBP19.76■□□□□ 0.75
HMGA1-203ENST00000374116 PRAM1Q96QH2 718 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms