RNA–Protein interactions for RNA: ENST00000372917.8

TRERF1-203, Transcript of transcriptional regulating factor 1, humanhuman

TSL 1 (best) BASIC

Gene TRERF1, Length 3,914 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1-203ENST00000372917 SEC24BO95487 1268 aa13.29□□□□□ -0.28
TRERF1-203ENST00000372917 PWP2Q15269 919 aaKnown RBP13.29□□□□□ -0.28
TRERF1-203ENST00000372917 C20orf194Q5TEA3 1177 aa13.29□□□□□ -0.28
TRERF1-203ENST00000372917 EP400NLQ6ZTU2 488 aa13.29□□□□□ -0.28
TRERF1-203ENST00000372917 MLECQ14165 292 aa13.29□□□□□ -0.28
TRERF1-203ENST00000372917 L3MBTL2Q969R5 705 aa13.29□□□□□ -0.28
TRERF1-203ENST00000372917 ZNF500O60304 480 aaPredicted RBP13.28□□□□□ -0.28
TRERF1-203ENST00000372917 PSEN1P49768 467 aa13.28□□□□□ -0.28
TRERF1-203ENST00000372917 ZNF622Q969S3 477 aaKnown RBP eCLIP13.28□□□□□ -0.28
TRERF1-203ENST00000372917 MMP14P50281 582 aa13.28□□□□□ -0.28
TRERF1-203ENST00000372917 PDCL2Q8N4E4 241 aa13.28□□□□□ -0.28
TRERF1-203ENST00000372917 NOL7Q9UMY1 257 aaKnown RBP13.28□□□□□ -0.28
TRERF1-203ENST00000372917 NAIPQ13075 1403 aa13.27□□□□□ -0.28
TRERF1-203ENST00000372917 EFCAB5A4FU69 1503 aa13.27□□□□□ -0.28
TRERF1-203ENST00000372917 PTPN23Q9H3S7 1636 aa13.27□□□□□ -0.28
TRERF1-203ENST00000372917 HMGXB3Q12766 1538 aa13.27□□□□□ -0.29
TRERF1-203ENST00000372917 RALBP1Q15311 655 aa13.27□□□□□ -0.29
TRERF1-203ENST00000372917 ERICH4A6NGS2 130 aa13.27□□□□□ -0.29
TRERF1-203ENST00000372917 U2AF2P26368 475 aaKnown RBP eCLIP13.27□□□□□ -0.29
TRERF1-203ENST00000372917 AXDND1Q5T1B0 1012 aaPredicted RBP13.27□□□□□ -0.29
TRERF1-203ENST00000372917 SLC20A2Q08357 652 aa13.26□□□□□ -0.29
TRERF1-203ENST00000372917 AQRO60306 1485 aaKnown RBP eCLIP13.26□□□□□ -0.29
TRERF1-203ENST00000372917 ZNF710Q8N1W2 664 aa13.26□□□□□ -0.29
TRERF1-203ENST00000372917 MYOM3Q5VTT5 1437 aa13.26□□□□□ -0.29
TRERF1-203ENST00000372917 MPHOSPH9Q99550 1183 aa13.26□□□□□ -0.29
TRERF1-203ENST00000372917 KIF3AQ9Y496 699 aa13.25□□□□□ -0.29
TRERF1-203ENST00000372917 USP19O94966 1318 aa13.25□□□□□ -0.29
TRERF1-203ENST00000372917 NCOA2Q15596 1464 aa13.25□□□□□ -0.29
TRERF1-203ENST00000372917 MYRIPQ8NFW9 859 aa13.25□□□□□ -0.29
TRERF1-203ENST00000372917 ZKSCAN5Q9Y2L8 839 aa13.23□□□□□ -0.29
TRERF1-203ENST00000372917 BANK1Q8NDB2 785 aa13.23□□□□□ -0.29
TRERF1-203ENST00000372917 CDCA7LQ96GN5 454 aa13.23□□□□□ -0.29
TRERF1-203ENST00000372917 NCOA1Q15788 1441 aa13.22□□□□□ -0.29
TRERF1-203ENST00000372917 KDM2BQ8NHM5 1336 aa13.22□□□□□ -0.29
TRERF1-203ENST00000372917 CAPN2P17655 700 aa13.22□□□□□ -0.29
TRERF1-203ENST00000372917 LMOD3Q0VAK6 560 aa13.22□□□□□ -0.29
TRERF1-203ENST00000372917 TMX1Q9H3N1 280 aa13.22□□□□□ -0.29
TRERF1-203ENST00000372917 KIF7Q2M1P5 1343 aa13.22□□□□□ -0.29
TRERF1-203ENST00000372917 GEMIN8Q9NWZ8 242 aaKnown RBP13.21□□□□□ -0.3
TRERF1-203ENST00000372917 GBP4Q96PP9 640 aa13.2□□□□□ -0.3
TRERF1-203ENST00000372917 PTPRKQ15262 1439 aa13.2□□□□□ -0.3
TRERF1-203ENST00000372917 ERCC6Q03468 1493 aa13.2□□□□□ -0.3
TRERF1-203ENST00000372917 SKOR2Q2VWA4 1001 aaPredicted RBP13.2□□□□□ -0.3
TRERF1-203ENST00000372917 PNISRQ8TF01 805 aaKnown RBP13.2□□□□□ -0.3
TRERF1-203ENST00000372917 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.2□□□□□ -0.3
TRERF1-203ENST00000372917 HS1BP3Q53T59 392 aa13.2□□□□□ -0.3
TRERF1-203ENST00000372917 CALCOCO1Q9P1Z2 691 aa13.2□□□□□ -0.3
TRERF1-203ENST00000372917 FAM43BQ6ZT52 329 aaPredicted RBP13.19□□□□□ -0.3
TRERF1-203ENST00000372917 HMGN5P82970 282 aaKnown RBP13.19□□□□□ -0.3
TRERF1-203ENST00000372917 CADPSQ9ULU8 1353 aa13.18□□□□□ -0.3
TRERF1-203ENST00000372917 GTF2A1P52655 376 aaPredicted RBP13.18□□□□□ -0.3
TRERF1-203ENST00000372917 TSPYL1Q9H0U9 437 aa13.18□□□□□ -0.3
TRERF1-203ENST00000372917 RGL3Q3MIN7 710 aa13.18□□□□□ -0.3
TRERF1-203ENST00000372917 KIAA2012Q0VF49 1180 aa13.17□□□□□ -0.3
TRERF1-203ENST00000372917 GPATCH11Q8N954 259 aa13.17□□□□□ -0.3
TRERF1-203ENST00000372917 BCL2L12Q9HB09 334 aa13.17□□□□□ -0.3
TRERF1-203ENST00000372917 DDX49Q9Y6V7 483 aaKnown RBP13.17□□□□□ -0.3
TRERF1-203ENST00000372917 YY1AP1Q9H869 796 aa13.17□□□□□ -0.3
TRERF1-203ENST00000372917 MPNDQ8N594 471 aa13.16□□□□□ -0.3
TRERF1-203ENST00000372917 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.16□□□□□ -0.3
TRERF1-203ENST00000372917 CCDC39Q9UFE4 941 aa13.16□□□□□ -0.3
TRERF1-203ENST00000372917 HSCBQ8IWL3 235 aa13.15□□□□□ -0.3
TRERF1-203ENST00000372917 GABPB1Q06547 395 aaPredicted RBP13.15□□□□□ -0.3
TRERF1-203ENST00000372917 TNPO1Q92973 898 aaKnown RBP13.15□□□□□ -0.3
TRERF1-203ENST00000372917 PRIMPOLQ96LW4 560 aa13.15□□□□□ -0.3
TRERF1-203ENST00000372917 GOLGA6L22H0YM25 854 aa13.14□□□□□ -0.31
TRERF1-203ENST00000372917 CARD11Q9BXL7 1154 aa13.14□□□□□ -0.31
TRERF1-203ENST00000372917 RSPH14Q9UHP6 348 aa13.14□□□□□ -0.31
TRERF1-203ENST00000372917 SUPT6HQ7KZ85 1726 aaKnown RBP13.14□□□□□ -0.31
TRERF1-203ENST00000372917 TNNT1P13805 278 aa13.14□□□□□ -0.31
TRERF1-203ENST00000372917 MCM5P33992 734 aa13.14□□□□□ -0.31
TRERF1-203ENST00000372917 TOMM22Q9NS69 142 aa13.14□□□□□ -0.31
TRERF1-203ENST00000372917 EHBP1L1Q8N3D4 1523 aa13.14□□□□□ -0.31
TRERF1-203ENST00000372917 PDS5BQ9NTI5 1447 aa13.14□□□□□ -0.31
TRERF1-203ENST00000372917 OGFRQ9NZT2 677 aa13.14□□□□□ -0.31
TRERF1-203ENST00000372917 FOXD4L1Q9NU39 408 aa13.13□□□□□ -0.31
TRERF1-203ENST00000372917 NBPF8Q3BBV2 869 aa13.13□□□□□ -0.31
TRERF1-203ENST00000372917 CCDC9Q9Y3X0 531 aaKnown RBP13.13□□□□□ -0.31
TRERF1-203ENST00000372917 TRHP20396 242 aaPredicted RBP13.12□□□□□ -0.31
TRERF1-203ENST00000372917 EFCC1Q9HA90 598 aa13.12□□□□□ -0.31
TRERF1-203ENST00000372917 ROCK2O75116 1388 aaKnown RBP13.12□□□□□ -0.31
TRERF1-203ENST00000372917 SLFN14P0C7P3 912 aa13.12□□□□□ -0.31
TRERF1-203ENST00000372917 TBC1D32Q96NH3 1257 aa13.12□□□□□ -0.31
TRERF1-203ENST00000372917 PDE3BQ13370 1112 aa13.11□□□□□ -0.31
TRERF1-203ENST00000372917 FEZ1Q99689 392 aa13.11□□□□□ -0.31
TRERF1-203ENST00000372917 FEZ2Q9UHY8 353 aaPredicted RBP13.11□□□□□ -0.31
TRERF1-203ENST00000372917 MYCBPQ99417 103 aaPredicted RBP13.11□□□□□ -0.31
TRERF1-203ENST00000372917 TULP2O00295 520 aa13.1□□□□□ -0.31
TRERF1-203ENST00000372917 CARD10Q9BWT7 1032 aa13.1□□□□□ -0.31
TRERF1-203ENST00000372917 KDM5BQ9UGL1 1544 aa13.1□□□□□ -0.31
TRERF1-203ENST00000372917 GRIPAP1Q4V328 841 aa13.1□□□□□ -0.31
TRERF1-203ENST00000372917 CAVIN1Q6NZI2 390 aaKnown RBP13.09□□□□□ -0.31
TRERF1-203ENST00000372917 RBSNQ9H1K0 784 aa13.09□□□□□ -0.31
TRERF1-203ENST00000372917 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.09□□□□□ -0.31
TRERF1-203ENST00000372917 CHAF1AQ13111 956 aaPredicted RBP13.09□□□□□ -0.31
TRERF1-203ENST00000372917 HECW1Q76N89 1606 aa13.09□□□□□ -0.31
TRERF1-203ENST00000372917 ZNF526Q8TF50 670 aaPredicted RBP13.09□□□□□ -0.31
TRERF1-203ENST00000372917 USP47Q96K76 1375 aa13.08□□□□□ -0.31
TRERF1-203ENST00000372917 HSP90AB1P08238 724 aaKnown RBP13.08□□□□□ -0.31
TRERF1-203ENST00000372917 MFAP1P55081 439 aaKnown RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms