RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 C8orf34Q49A92 452 aa21.41■■□□□ 1.02
SDC4-201ENST00000372733 CCDC146Q8IYE0 955 aa21.4■■□□□ 1.02
SDC4-201ENST00000372733 SYNMO15061 1565 aa21.4■■□□□ 1.02
SDC4-201ENST00000372733 FAM161AQ3B820 660 aa21.39■■□□□ 1.01
SDC4-201ENST00000372733 ASXL1Q8IXJ9 1541 aa21.38■■□□□ 1.01
SDC4-201ENST00000372733 NFKBIBQ15653 356 aa21.38■■□□□ 1.01
SDC4-201ENST00000372733 CLASP1Q7Z460 1538 aa21.38■■□□□ 1.01
SDC4-201ENST00000372733 RGS3P49796 1198 aa21.38■■□□□ 1.01
SDC4-201ENST00000372733 SLFN5Q08AF3 891 aa21.37■■□□□ 1.01
SDC4-201ENST00000372733 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.37■■□□□ 1.01
SDC4-201ENST00000372733 PIK3C2GO75747 1445 aa21.36■■□□□ 1.01
SDC4-201ENST00000372733 SPINK5Q9NQ38 1064 aaPredicted RBP21.36■■□□□ 1.01
SDC4-201ENST00000372733 DAXXQ9UER7 740 aaPredicted RBP21.35■■□□□ 1.01
SDC4-201ENST00000372733 SCAF11Q99590 1463 aaKnown RBP21.35■■□□□ 1.01
SDC4-201ENST00000372733 MYOM1P52179 1685 aa21.35■■□□□ 1.01
SDC4-201ENST00000372733 SPHKAPQ2M3C7 1700 aa21.33■■□□□ 1
SDC4-201ENST00000372733 CDCA8Q53HL2 280 aa21.32■■□□□ 1
SDC4-201ENST00000372733 APAF1O14727 1248 aa21.32■■□□□ 1
SDC4-201ENST00000372733 ANO8Q9HCE9 1232 aaPredicted RBP21.32■■□□□ 1
SDC4-201ENST00000372733 GSE1Q14687 1217 aa21.31■■□□□ 1
SDC4-201ENST00000372733 BCAR3O75815 825 aa21.3■■□□□ 1
SDC4-201ENST00000372733 TRPM2O94759 1503 aa21.3■■□□□ 1
SDC4-201ENST00000372733 TRMT2AQ8IZ69 625 aaKnown RBP21.3■■□□□ 1
SDC4-201ENST00000372733 TRAPPC8Q9Y2L5 1435 aa21.3■■□□□ 1
SDC4-201ENST00000372733 ABCC2Q92887 1545 aa21.3■■□□□ 1
SDC4-201ENST00000372733 NKTRP30414 1462 aaKnown RBP21.3■■□□□ 1
SDC4-201ENST00000372733 EIF3AQ14152 1382 aaKnown RBP21.29■■□□□ 1
SDC4-201ENST00000372733 BRPF3Q9ULD4 1205 aa21.29■■□□□ 1
SDC4-201ENST00000372733 CLTCL1P53675 1640 aa21.29■■□□□ 1
SDC4-201ENST00000372733 SCAPERQ9BY12 1400 aa21.29■■□□□ 1
SDC4-201ENST00000372733 ERCC6L2Q5T890 1561 aa21.28■■□□□ 1
SDC4-201ENST00000372733 ABCC1P33527 1531 aa21.28■■□□□ 1
SDC4-201ENST00000372733 DMRT2Q9Y5R5 561 aa21.27■■□□□ 1
SDC4-201ENST00000372733 CEP152O94986 1710 aa21.27■■□□□ 1
SDC4-201ENST00000372733 NPC1L1Q9UHC9 1359 aa21.27■■□□□ 1
SDC4-201ENST00000372733 FRAT1Q92837 279 aaPredicted RBP21.26■□□□□ 0.99
SDC4-201ENST00000372733 PLCH2O75038 1416 aa21.26■□□□□ 0.99
SDC4-201ENST00000372733 CHD1O14646 1710 aa21.25■□□□□ 0.99
SDC4-201ENST00000372733 EFCAB2Q5VUJ9 269 aa21.25■□□□□ 0.99
SDC4-201ENST00000372733 KDM5AP29375 1690 aaKnown RBP21.24■□□□□ 0.99
SDC4-201ENST00000372733 E9PSI1 815 aa21.23■□□□□ 0.99
SDC4-201ENST00000372733 IGHDP01880 384 aa21.23■□□□□ 0.99
SDC4-201ENST00000372733 PTPRTO14522 1441 aa21.23■□□□□ 0.99
SDC4-201ENST00000372733 SHROOM2Q13796 1616 aa21.22■□□□□ 0.99
SDC4-201ENST00000372733 FRAT2O75474 233 aaPredicted RBP21.22■□□□□ 0.99
SDC4-201ENST00000372733 SPAG9O60271 1321 aaKnown RBP21.21■□□□□ 0.99
SDC4-201ENST00000372733 ERVK-7P63135 1459 aa21.19■□□□□ 0.98
SDC4-201ENST00000372733 AFAP1Q8N556 730 aa21.19■□□□□ 0.98
SDC4-201ENST00000372733 ZFYVE16Q7Z3T8 1539 aa21.19■□□□□ 0.98
SDC4-201ENST00000372733 CARD14Q9BXL6 1004 aa21.19■□□□□ 0.98
SDC4-201ENST00000372733 CFAP70Q5T0N1 1121 aa21.18■□□□□ 0.98
SDC4-201ENST00000372733 PANK1Q8TE04 598 aa21.17■□□□□ 0.98
SDC4-201ENST00000372733 USP19O94966 1318 aa21.17■□□□□ 0.98
SDC4-201ENST00000372733 ZCCHC11Q5TAX3 1644 aaKnown RBP21.17■□□□□ 0.98
SDC4-201ENST00000372733 CENPJQ9HC77 1338 aaPredicted RBP21.16■□□□□ 0.98
SDC4-201ENST00000372733 STAC3Q96MF2 364 aa21.16■□□□□ 0.98
SDC4-201ENST00000372733 COG6Q9Y2V7 657 aa21.16■□□□□ 0.98
SDC4-201ENST00000372733 VIRMAQ69YN4 1812 aaKnown RBP21.16■□□□□ 0.98
SDC4-201ENST00000372733 TET3O43151 1660 aa21.16■□□□□ 0.98
SDC4-201ENST00000372733 CGNL1Q0VF96 1302 aa21.15■□□□□ 0.98
SDC4-201ENST00000372733 CANXP27824 592 aaKnown RBP21.15■□□□□ 0.98
SDC4-201ENST00000372733 DEPDC5O75140 1603 aa21.15■□□□□ 0.98
SDC4-201ENST00000372733 ABCA6Q8N139 1617 aa21.15■□□□□ 0.98
SDC4-201ENST00000372733 UGGT1Q9NYU2 1555 aa21.15■□□□□ 0.98
SDC4-201ENST00000372733 CLUAP1Q96AJ1 413 aa21.14■□□□□ 0.98
SDC4-201ENST00000372733 KIAA1210Q9ULL0 1709 aa21.14■□□□□ 0.98
SDC4-201ENST00000372733 SEC24BO95487 1268 aa21.13■□□□□ 0.97
SDC4-201ENST00000372733 PDE3AQ14432 1141 aa21.13■□□□□ 0.97
SDC4-201ENST00000372733 ADGRF5Q8IZF2 1346 aa21.13■□□□□ 0.97
SDC4-201ENST00000372733 WWC1Q8IX03 1113 aa21.12■□□□□ 0.97
SDC4-201ENST00000372733 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.11■□□□□ 0.97
SDC4-201ENST00000372733 MAP3K4Q9Y6R4 1608 aa21.11■□□□□ 0.97
SDC4-201ENST00000372733 RTEL1-TNFRSF6BF6WH68 1400 aa21.11■□□□□ 0.97
SDC4-201ENST00000372733 NINLQ9Y2I6 1382 aa21.1■□□□□ 0.97
SDC4-201ENST00000372733 NEUROD2Q15784 382 aa21.09■□□□□ 0.97
SDC4-201ENST00000372733 RRP7AQ9Y3A4 280 aaKnown RBP21.09■□□□□ 0.97
SDC4-201ENST00000372733 MAPK8IP3Q9UPT6 1336 aa21.09■□□□□ 0.97
SDC4-201ENST00000372733 KANK1Q14678 1352 aa21.09■□□□□ 0.97
SDC4-201ENST00000372733 NGEFQ8N5V2 710 aa21.08■□□□□ 0.97
SDC4-201ENST00000372733 POLR3AO14802 1390 aaPredicted RBP21.08■□□□□ 0.97
SDC4-201ENST00000372733 MYOM2P54296 1465 aa21.08■□□□□ 0.97
SDC4-201ENST00000372733 VWDEQ8N2E2 1590 aa21.08■□□□□ 0.96
SDC4-201ENST00000372733 TNNT2P45379 298 aaPredicted RBP21.08■□□□□ 0.96
SDC4-201ENST00000372733 NLRP1Q9C000 1473 aa21.07■□□□□ 0.96
SDC4-201ENST00000372733 KIF3BO15066 747 aa21.07■□□□□ 0.96
SDC4-201ENST00000372733 TNNQ9UQP3 1299 aa21.07■□□□□ 0.96
SDC4-201ENST00000372733 SHPRHQ149N8 1683 aa21.06■□□□□ 0.96
SDC4-201ENST00000372733 ATP7AQ04656 1500 aa21.05■□□□□ 0.96
SDC4-201ENST00000372733 NSD3Q9BZ95 1437 aa21.05■□□□□ 0.96
SDC4-201ENST00000372733 RLBP1P12271 317 aa21.04■□□□□ 0.96
SDC4-201ENST00000372733 RARSP54136 660 aaKnown RBP21.04■□□□□ 0.96
SDC4-201ENST00000372733 BCL2L13Q9BXK5 485 aa21.04■□□□□ 0.96
SDC4-201ENST00000372733 SLKQ9H2G2 1235 aaPredicted RBP21.04■□□□□ 0.96
SDC4-201ENST00000372733 NEURL4Q96JN8 1562 aa21.03■□□□□ 0.96
SDC4-201ENST00000372733 INO80Q9ULG1 1556 aaPredicted RBP21.03■□□□□ 0.96
SDC4-201ENST00000372733 MROH2AA6NES4 1674 aa21.02■□□□□ 0.96
SDC4-201ENST00000372733 IQSEC2Q5JU85 1478 aa21.02■□□□□ 0.96
SDC4-201ENST00000372733 MORC1Q86VD1 984 aa21.02■□□□□ 0.96
SDC4-201ENST00000372733 PCDHB15Q9Y5E8 787 aa21.02■□□□□ 0.96
SDC4-201ENST00000372733 SLC24A1O60721 1099 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms