RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 NEUROD1Q13562 356 aa20.1■□□□□ 0.81
LDB3-204ENST00000372066 PHF23Q9BUL5 403 aaPredicted RBP20.09■□□□□ 0.81
LDB3-204ENST00000372066 PPP1R15AO75807 674 aaPredicted RBP20.08■□□□□ 0.81
LDB3-204ENST00000372066 ALKQ9UM73 1620 aa20.08■□□□□ 0.81
LDB3-204ENST00000372066 STRCP1A6NGW2 1772 aa20.06■□□□□ 0.8
LDB3-204ENST00000372066 MED1Q15648 1581 aaPredicted RBP20.06■□□□□ 0.8
LDB3-204ENST00000372066 MIER1Q8N108 512 aa20.05■□□□□ 0.8
LDB3-204ENST00000372066 SLC26A8Q96RN1 970 aa20.05■□□□□ 0.8
LDB3-204ENST00000372066 BCANQ96GW7 911 aa20.04■□□□□ 0.8
LDB3-204ENST00000372066 SLC52A1Q9NWF4 448 aa20.04■□□□□ 0.8
LDB3-204ENST00000372066 LMTK2Q8IWU2 1503 aa20.04■□□□□ 0.8
LDB3-204ENST00000372066 KCNA6P17658 529 aa20.03■□□□□ 0.8
LDB3-204ENST00000372066 PIK3C2BO00750 1634 aa20.02■□□□□ 0.8
LDB3-204ENST00000372066 SYNMO15061 1565 aa20.02■□□□□ 0.8
LDB3-204ENST00000372066 EFCAB6Q5THR3 1501 aa20.01■□□□□ 0.79
LDB3-204ENST00000372066 PROSER2Q86WR7 435 aaPredicted RBP20.01■□□□□ 0.79
LDB3-204ENST00000372066 TRIM52Q96A61 297 aa20.01■□□□□ 0.79
LDB3-204ENST00000372066 NOS1P29475 1434 aa20.01■□□□□ 0.79
LDB3-204ENST00000372066 RBM33Q96EV2 1170 aaKnown RBP20■□□□□ 0.79
LDB3-204ENST00000372066 MPHOSPH9Q99550 1183 aa20■□□□□ 0.79
LDB3-204ENST00000372066 ANKRD50Q9ULJ7 1429 aa19.99■□□□□ 0.79
LDB3-204ENST00000372066 TMEM94Q12767 1356 aa19.99■□□□□ 0.79
LDB3-204ENST00000372066 HDGFP51858 240 aaKnown RBP19.95■□□□□ 0.78
LDB3-204ENST00000372066 RPRD2Q5VT52 1461 aaKnown RBP19.94■□□□□ 0.78
LDB3-204ENST00000372066 FAM135BQ49AJ0 1406 aa19.94■□□□□ 0.78
LDB3-204ENST00000372066 CHGAP10645 457 aaKnown RBP19.93■□□□□ 0.78
LDB3-204ENST00000372066 ANKRD30BQ9BXX2 1392 aa19.93■□□□□ 0.78
LDB3-204ENST00000372066 TET3O43151 1660 aa19.92■□□□□ 0.78
LDB3-204ENST00000372066 ADGRB3O60242 1522 aa19.91■□□□□ 0.78
LDB3-204ENST00000372066 KDM5AP29375 1690 aaKnown RBP19.91■□□□□ 0.78
LDB3-204ENST00000372066 RIMS2Q9UQ26 1411 aa19.88■□□□□ 0.77
LDB3-204ENST00000372066 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.88■□□□□ 0.77
LDB3-204ENST00000372066 PLEKHG1Q9ULL1 1385 aa19.88■□□□□ 0.77
LDB3-204ENST00000372066 RGS17Q9UGC6 210 aaPredicted RBP19.87■□□□□ 0.77
LDB3-204ENST00000372066 MSH6P52701 1360 aa19.87■□□□□ 0.77
LDB3-204ENST00000372066 NUTM2DQ5VT03 806 aaPredicted RBP19.87■□□□□ 0.77
LDB3-204ENST00000372066 SLAIN2Q9P270 581 aa19.87■□□□□ 0.77
LDB3-204ENST00000372066 XIRP1Q702N8 1843 aaKnown RBP19.86■□□□□ 0.77
LDB3-204ENST00000372066 ZFYVE9O95405 1425 aa19.86■□□□□ 0.77
LDB3-204ENST00000372066 SLC4A1APQ9BWU0 796 aaKnown RBP19.86■□□□□ 0.77
LDB3-204ENST00000372066 TBX22Q9Y458 520 aa19.86■□□□□ 0.77
LDB3-204ENST00000372066 NKTRP30414 1462 aaKnown RBP19.84■□□□□ 0.77
LDB3-204ENST00000372066 C14orf37Q86TY3 774 aa19.83■□□□□ 0.76
LDB3-204ENST00000372066 NUP155O75694 1391 aa19.82■□□□□ 0.76
LDB3-204ENST00000372066 UNC13BO14795 1591 aa19.8■□□□□ 0.76
LDB3-204ENST00000372066 NWD1Q149M9 1564 aa19.79■□□□□ 0.76
LDB3-204ENST00000372066 TMEM131LA2VDJ0 1609 aa19.78■□□□□ 0.76
LDB3-204ENST00000372066 POTEAQ6S8J7 498 aa19.77■□□□□ 0.76
LDB3-204ENST00000372066 ROBO1Q9Y6N7 1651 aa19.77■□□□□ 0.76
LDB3-204ENST00000372066 YTHDC1Q96MU7 727 aaKnown RBP19.76■□□□□ 0.75
LDB3-204ENST00000372066 L3MBTL2Q969R5 705 aa19.75■□□□□ 0.75
LDB3-204ENST00000372066 C19orf44Q9H6X5 657 aa19.75■□□□□ 0.75
LDB3-204ENST00000372066 ADAMTS13Q76LX8 1427 aa19.75■□□□□ 0.75
LDB3-204ENST00000372066 NCOA3Q9Y6Q9 1424 aa19.74■□□□□ 0.75
LDB3-204ENST00000372066 ATF3P18847 181 aa19.74■□□□□ 0.75
LDB3-204ENST00000372066 AMOTL2Q9Y2J4 779 aa19.74■□□□□ 0.75
LDB3-204ENST00000372066 CADPS2Q86UW7 1296 aa19.74■□□□□ 0.75
LDB3-204ENST00000372066 JCADQ9P266 1359 aa19.73■□□□□ 0.75
LDB3-204ENST00000372066 DDX10Q13206 875 aaKnown RBP19.72■□□□□ 0.75
LDB3-204ENST00000372066 FOXD1Q16676 465 aa19.72■□□□□ 0.75
LDB3-204ENST00000372066 PIK3R4Q99570 1358 aa19.72■□□□□ 0.75
LDB3-204ENST00000372066 IQGAP3Q86VI3 1631 aa19.72■□□□□ 0.75
LDB3-204ENST00000372066 MYO5BQ9ULV0 1848 aa19.72■□□□□ 0.75
LDB3-204ENST00000372066 E9PCH4 1651 aa19.71■□□□□ 0.75
LDB3-204ENST00000372066 ZNF326Q5BKZ1 582 aaKnown RBP19.71■□□□□ 0.75
LDB3-204ENST00000372066 EIF4G2P78344 907 aaKnown RBP eCLIP19.7■□□□□ 0.74
LDB3-204ENST00000372066 CHD2O14647 1828 aaKnown RBP19.7■□□□□ 0.74
LDB3-204ENST00000372066 PELP1Q8IZL8 1130 aaKnown RBP19.67■□□□□ 0.74
LDB3-204ENST00000372066 CCER2I3L3R5 266 aa19.66■□□□□ 0.74
LDB3-204ENST00000372066 PTPRUQ92729 1446 aa19.66■□□□□ 0.74
LDB3-204ENST00000372066 HSPA5P11021 654 aaKnown RBP19.66■□□□□ 0.74
LDB3-204ENST00000372066 DIP2AQ14689 1571 aa19.65■□□□□ 0.74
LDB3-204ENST00000372066 ANP32CO43423 234 aa19.65■□□□□ 0.74
LDB3-204ENST00000372066 MEX3CQ5U5Q3 659 aaKnown RBP19.65■□□□□ 0.74
LDB3-204ENST00000372066 GTF3C3Q9Y5Q9 886 aa19.65■□□□□ 0.74
LDB3-204ENST00000372066 PHLPP1O60346 1717 aa19.64■□□□□ 0.74
LDB3-204ENST00000372066 SPATA31A6Q5VVP1 1343 aa19.64■□□□□ 0.73
LDB3-204ENST00000372066 TRPM2O94759 1503 aa19.63■□□□□ 0.73
LDB3-204ENST00000372066 BRINP3Q76B58 766 aa19.63■□□□□ 0.73
LDB3-204ENST00000372066 HIRIP3Q9BW71 556 aaPredicted RBP19.61■□□□□ 0.73
LDB3-204ENST00000372066 SPATA31E1Q6ZUB1 1445 aa19.61■□□□□ 0.73
LDB3-204ENST00000372066 RALGAPBQ86X10 1494 aa19.61■□□□□ 0.73
LDB3-204ENST00000372066 METP08581 1390 aa19.6■□□□□ 0.73
LDB3-204ENST00000372066 NBPF8Q3BBV2 869 aa19.59■□□□□ 0.73
LDB3-204ENST00000372066 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.58■□□□□ 0.73
LDB3-204ENST00000372066 NUTM2BA6NNL0 878 aaPredicted RBP19.58■□□□□ 0.73
LDB3-204ENST00000372066 NUTM2EB1AL46 878 aaPredicted RBP19.58■□□□□ 0.73
LDB3-204ENST00000372066 ZNF772Q68DY9 489 aaPredicted RBP19.58■□□□□ 0.73
LDB3-204ENST00000372066 NUTM2AQ8IVF1 878 aaPredicted RBP19.58■□□□□ 0.73
LDB3-204ENST00000372066 COL16A1Q07092 1604 aaPredicted RBP19.58■□□□□ 0.73
LDB3-204ENST00000372066 WASHC2AQ641Q2 1341 aa19.55■□□□□ 0.72
LDB3-204ENST00000372066 LRP6O75581 1613 aa19.55■□□□□ 0.72
LDB3-204ENST00000372066 DCCP43146 1447 aa19.55■□□□□ 0.72
LDB3-204ENST00000372066 SETBP1Q9Y6X0 1596 aa19.55■□□□□ 0.72
LDB3-204ENST00000372066 CCDC7Q96M83 1385 aa19.55■□□□□ 0.72
LDB3-204ENST00000372066 AHDC1Q5TGY3 1603 aaPredicted RBP19.54■□□□□ 0.72
LDB3-204ENST00000372066 CCDC144AA2RUR9 1427 aa19.53■□□□□ 0.72
LDB3-204ENST00000372066 VGFO15240 615 aaPredicted RBP19.53■□□□□ 0.72
LDB3-204ENST00000372066 LRRC59Q96AG4 307 aaKnown RBP19.53■□□□□ 0.72
LDB3-204ENST00000372066 LAMC1P11047 1609 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms