RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 R3HCC1Q9Y3T6 440 aaKnown RBP19.54■□□□□ 0.72
COL17A1-202ENST00000369733 ZNF644Q9H582 1327 aaPredicted RBP19.54■□□□□ 0.72
COL17A1-202ENST00000369733 GOLGA6L1Q8N7Z2 621 aa19.54■□□□□ 0.72
COL17A1-202ENST00000369733 GOLGA6L19H0YKK7 550 aa19.53■□□□□ 0.72
COL17A1-202ENST00000369733 FYCO1Q9BQS8 1478 aa19.52■□□□□ 0.71
COL17A1-202ENST00000369733 TPM2P07951 284 aa19.51■□□□□ 0.71
COL17A1-202ENST00000369733 RIPK4P57078 832 aa19.51■□□□□ 0.71
COL17A1-202ENST00000369733 EVC2Q86UK5 1308 aa19.51■□□□□ 0.71
COL17A1-202ENST00000369733 INTS3Q68E01 1043 aaKnown RBP19.5■□□□□ 0.71
COL17A1-202ENST00000369733 ZNF592Q92610 1267 aa19.5■□□□□ 0.71
COL17A1-202ENST00000369733 H3BQV1 296 aa19.5■□□□□ 0.71
COL17A1-202ENST00000369733 IFFO2Q5TF58 517 aa19.5■□□□□ 0.71
COL17A1-202ENST00000369733 FGD5Q6ZNL6 1462 aa19.5■□□□□ 0.71
COL17A1-202ENST00000369733 KIF3AQ9Y496 699 aa19.5■□□□□ 0.71
COL17A1-202ENST00000369733 BECN2A8MW95 431 aa19.5■□□□□ 0.71
COL17A1-202ENST00000369733 SF3A1Q15459 793 aaKnown RBP19.49■□□□□ 0.71
COL17A1-202ENST00000369733 NBPF8Q3BBV2 869 aa19.49■□□□□ 0.71
COL17A1-202ENST00000369733 API5Q9BZZ5 524 aaKnown RBP19.49■□□□□ 0.71
COL17A1-202ENST00000369733 PDZRN3Q9UPQ7 1066 aa19.49■□□□□ 0.71
COL17A1-202ENST00000369733 CCDC39Q9UFE4 941 aa19.48■□□□□ 0.71
COL17A1-202ENST00000369733 JPH4Q96JJ6 628 aa19.48■□□□□ 0.71
COL17A1-202ENST00000369733 MAP7D2Q96T17 732 aa19.48■□□□□ 0.71
COL17A1-202ENST00000369733 FANCD2Q9BXW9 1451 aa19.47■□□□□ 0.71
COL17A1-202ENST00000369733 CCDC34Q96HJ3 373 aa19.47■□□□□ 0.71
COL17A1-202ENST00000369733 SYNJ1O43426 1573 aa19.47■□□□□ 0.71
COL17A1-202ENST00000369733 WASHC2CQ9Y4E1 1318 aa19.47■□□□□ 0.71
COL17A1-202ENST00000369733 DIAPH1O60610 1272 aaKnown RBP19.47■□□□□ 0.71
COL17A1-202ENST00000369733 PPP2R1AP30153 589 aa19.46■□□□□ 0.71
COL17A1-202ENST00000369733 CDC45O75419 566 aa19.46■□□□□ 0.71
COL17A1-202ENST00000369733 FAM184AQ8NB25 1140 aa19.45■□□□□ 0.7
COL17A1-202ENST00000369733 PDE3AQ14432 1141 aa19.45■□□□□ 0.7
COL17A1-202ENST00000369733 MTERF4Q7Z6M4 381 aaKnown RBP19.45■□□□□ 0.7
COL17A1-202ENST00000369733 ANO2Q9NQ90 1003 aa19.45■□□□□ 0.7
COL17A1-202ENST00000369733 GORABQ5T7V8 394 aa19.45■□□□□ 0.7
COL17A1-202ENST00000369733 PKNOX2Q96KN3 472 aa19.45■□□□□ 0.7
COL17A1-202ENST00000369733 CHMP3Q9Y3E7 222 aa19.45■□□□□ 0.7
COL17A1-202ENST00000369733 CCDC173Q0VFZ6 552 aa19.44■□□□□ 0.7
COL17A1-202ENST00000369733 DIAPH3Q9NSV4 1193 aa19.44■□□□□ 0.7
COL17A1-202ENST00000369733 ANKRD50Q9ULJ7 1429 aa19.44■□□□□ 0.7
COL17A1-202ENST00000369733 CAVIN1Q6NZI2 390 aaKnown RBP19.44■□□□□ 0.7
COL17A1-202ENST00000369733 ROCK1Q13464 1354 aa19.43■□□□□ 0.7
COL17A1-202ENST00000369733 BCAR3O75815 825 aa19.43■□□□□ 0.7
COL17A1-202ENST00000369733 HFM1A2PYH4 1435 aa19.43■□□□□ 0.7
COL17A1-202ENST00000369733 RNF214Q8ND24 703 aa19.42■□□□□ 0.7
COL17A1-202ENST00000369733 AMPHP49418 695 aa19.42■□□□□ 0.7
COL17A1-202ENST00000369733 GRPEL1Q9HAV7 217 aa19.4■□□□□ 0.7
COL17A1-202ENST00000369733 TPM3P06753 285 aa19.4■□□□□ 0.7
COL17A1-202ENST00000369733 RUFY2Q8WXA3 655 aa19.4■□□□□ 0.7
COL17A1-202ENST00000369733 CFTRP13569 1480 aa19.4■□□□□ 0.7
COL17A1-202ENST00000369733 NPHP1O15259 732 aa19.4■□□□□ 0.7
COL17A1-202ENST00000369733 CCAR2Q8N163 923 aaKnown RBP19.4■□□□□ 0.7
COL17A1-202ENST00000369733 NOC3LQ8WTT2 800 aaKnown RBP19.4■□□□□ 0.7
COL17A1-202ENST00000369733 TCP11L2Q8N4U5 519 aa19.39■□□□□ 0.7
COL17A1-202ENST00000369733 COG3Q96JB2 828 aa19.39■□□□□ 0.7
COL17A1-202ENST00000369733 TIAM1Q13009 1591 aa19.39■□□□□ 0.7
COL17A1-202ENST00000369733 ZKSCAN1P17029 563 aaPredicted RBP19.39■□□□□ 0.69
COL17A1-202ENST00000369733 CREBRFQ8IUR6 639 aa19.39■□□□□ 0.69
COL17A1-202ENST00000369733 SMC3Q9UQE7 1217 aa19.39■□□□□ 0.69
COL17A1-202ENST00000369733 RAD54L2Q9Y4B4 1467 aa19.39■□□□□ 0.69
COL17A1-202ENST00000369733 RBM10P98175 930 aaKnown RBP19.38■□□□□ 0.69
COL17A1-202ENST00000369733 VGFO15240 615 aaPredicted RBP19.38■□□□□ 0.69
COL17A1-202ENST00000369733 ISY1Q9ULR0 285 aaKnown RBP19.38■□□□□ 0.69
COL17A1-202ENST00000369733 BICD2Q8TD16 824 aa19.38■□□□□ 0.69
COL17A1-202ENST00000369733 IFT57Q9NWB7 429 aa19.38■□□□□ 0.69
COL17A1-202ENST00000369733 VPS37CA5D8V6 355 aaPredicted RBP19.37■□□□□ 0.69
COL17A1-202ENST00000369733 PRXQ9BXM0 1461 aa19.37■□□□□ 0.69
COL17A1-202ENST00000369733 GNAI1P63096 354 aa19.37■□□□□ 0.69
COL17A1-202ENST00000369733 MINK1Q8N4C8 1332 aaPredicted RBP19.37■□□□□ 0.69
COL17A1-202ENST00000369733 ZNF330Q9Y3S2 320 aaPredicted RBP19.36■□□□□ 0.69
COL17A1-202ENST00000369733 PRPF40AO75400 957 aaKnown RBP19.36■□□□□ 0.69
COL17A1-202ENST00000369733 GAPVD1Q14C86 1478 aa19.36■□□□□ 0.69
COL17A1-202ENST00000369733 LTV1Q96GA3 475 aaPredicted RBP19.36■□□□□ 0.69
COL17A1-202ENST00000369733 MCM4P33991 863 aa19.35■□□□□ 0.69
COL17A1-202ENST00000369733 GPS2Q13227 327 aa19.35■□□□□ 0.69
COL17A1-202ENST00000369733 MBD3O95983 291 aa19.35■□□□□ 0.69
COL17A1-202ENST00000369733 STAC3Q96MF2 364 aa19.35■□□□□ 0.69
COL17A1-202ENST00000369733 NGDNQ8NEJ9 315 aaKnown RBP19.35■□□□□ 0.69
COL17A1-202ENST00000369733 SASS6Q6UVJ0 657 aa19.34■□□□□ 0.69
COL17A1-202ENST00000369733 CHMP4CQ96CF2 233 aa19.34■□□□□ 0.69
COL17A1-202ENST00000369733 NINLQ9Y2I6 1382 aa19.34■□□□□ 0.69
COL17A1-202ENST00000369733 A0A0U1RQG5 324 aaPredicted RBP19.34■□□□□ 0.69
COL17A1-202ENST00000369733 TAF7LQ5H9L4 462 aa19.34■□□□□ 0.69
COL17A1-202ENST00000369733 TEX35Q5T0J7 233 aa19.34■□□□□ 0.69
COL17A1-202ENST00000369733 NBPF1Q3BBV0 1214 aa19.33■□□□□ 0.69
COL17A1-202ENST00000369733 RABEP1Q15276 862 aa19.33■□□□□ 0.68
COL17A1-202ENST00000369733 TSPY26PQ9H489 355 aa19.33■□□□□ 0.68
COL17A1-202ENST00000369733 MTHFSP49914 203 aa19.33■□□□□ 0.68
COL17A1-202ENST00000369733 HOMER1Q86YM7 354 aa19.33■□□□□ 0.68
COL17A1-202ENST00000369733 NUTM2FA1L443 756 aa19.32■□□□□ 0.68
COL17A1-202ENST00000369733 KIAA1107Q9UPP5 1409 aa19.32■□□□□ 0.68
COL17A1-202ENST00000369733 ESPNB1AK53 854 aa19.32■□□□□ 0.68
COL17A1-202ENST00000369733 RASSF8Q8NHQ8 419 aa19.32■□□□□ 0.68
COL17A1-202ENST00000369733 RRP9O43818 475 aaKnown RBP19.31■□□□□ 0.68
COL17A1-202ENST00000369733 EXOSC9Q06265 439 aaKnown RBP19.31■□□□□ 0.68
COL17A1-202ENST00000369733 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.31■□□□□ 0.68
COL17A1-202ENST00000369733 CSB-PGBD3P0DP91 1061 aa19.31■□□□□ 0.68
COL17A1-202ENST00000369733 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.31■□□□□ 0.68
COL17A1-202ENST00000369733 CCDC9Q9Y3X0 531 aaKnown RBP19.3■□□□□ 0.68
COL17A1-202ENST00000369733 IFIT2P09913 472 aaKnown RBP19.29■□□□□ 0.68
COL17A1-202ENST00000369733 HMOX1P09601 288 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms