RNA–Protein interactions for RNA: ENST00000369530.5

CSDE1-204, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,774 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-204ENST00000369530 PTPRUQ92729 1446 aa10.61□□□□□ -0.71
CSDE1-204ENST00000369530 DLC1Q96QB1 1528 aa10.61□□□□□ -0.71
CSDE1-204ENST00000369530 TNRQ92752 1358 aa10.6□□□□□ -0.71
CSDE1-204ENST00000369530 ALS2Q96Q42 1657 aa10.6□□□□□ -0.71
CSDE1-204ENST00000369530 NCOA3Q9Y6Q9 1424 aa10.6□□□□□ -0.71
CSDE1-204ENST00000369530 RGPD8O14715 1765 aaPredicted RBP10.59□□□□□ -0.71
CSDE1-204ENST00000369530 CDC42BPGQ6DT37 1551 aa10.59□□□□□ -0.71
CSDE1-204ENST00000369530 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.58□□□□□ -0.72
CSDE1-204ENST00000369530 PIK3C2GO75747 1445 aa10.58□□□□□ -0.72
CSDE1-204ENST00000369530 MST1RQ04912 1400 aa10.58□□□□□ -0.72
CSDE1-204ENST00000369530 ROBO1Q9Y6N7 1651 aa10.57□□□□□ -0.72
CSDE1-204ENST00000369530 AKAP12Q02952 1782 aa10.57□□□□□ -0.72
CSDE1-204ENST00000369530 TMEM2Q9UHN6 1383 aa10.57□□□□□ -0.72
CSDE1-204ENST00000369530 PLEKHG1Q9ULL1 1385 aa10.57□□□□□ -0.72
CSDE1-204ENST00000369530 WNK3Q9BYP7 1800 aa10.56□□□□□ -0.72
CSDE1-204ENST00000369530 PTCH1Q13635 1447 aa10.55□□□□□ -0.72
CSDE1-204ENST00000369530 NPHP4O75161 1426 aaPredicted RBP10.54□□□□□ -0.72
CSDE1-204ENST00000369530 NRAPQ86VF7 1730 aa10.54□□□□□ -0.72
CSDE1-204ENST00000369530 PHRF1Q9P1Y6 1649 aaKnown RBP10.53□□□□□ -0.72
CSDE1-204ENST00000369530 PIK3R4Q99570 1358 aa10.51□□□□□ -0.73
CSDE1-204ENST00000369530 ANKRD30BQ9BXX2 1392 aa10.51□□□□□ -0.73
CSDE1-204ENST00000369530 MED1Q15648 1581 aaPredicted RBP10.51□□□□□ -0.73
CSDE1-204ENST00000369530 MYOM1P52179 1685 aa10.51□□□□□ -0.73
CSDE1-204ENST00000369530 ANKRD26Q9UPS8 1709 aa10.51□□□□□ -0.73
CSDE1-204ENST00000369530 PRKCSHP14314 528 aaPredicted RBP10.51□□□□□ -0.73
CSDE1-204ENST00000369530 KIF1AQ12756 1690 aa10.5□□□□□ -0.73
CSDE1-204ENST00000369530 DCCP43146 1447 aa10.5□□□□□ -0.73
CSDE1-204ENST00000369530 CEBPAP49715 358 aaPredicted RBP10.5□□□□□ -0.73
CSDE1-204ENST00000369530 MON2Q7Z3U7 1717 aa10.49□□□□□ -0.73
CSDE1-204ENST00000369530 ZEB1P37275 1124 aaPredicted RBP10.49□□□□□ -0.73
CSDE1-204ENST00000369530 RANGAP1P46060 587 aaPredicted RBP10.49□□□□□ -0.73
CSDE1-204ENST00000369530 APLP2Q06481 763 aa10.49□□□□□ -0.73
CSDE1-204ENST00000369530 FBXO31Q5XUX0 539 aaPredicted RBP10.49□□□□□ -0.73
CSDE1-204ENST00000369530 ITSN1Q15811 1721 aa10.49□□□□□ -0.73
CSDE1-204ENST00000369530 ACIN1Q9UKV3 1341 aaKnown RBP10.48□□□□□ -0.73
CSDE1-204ENST00000369530 PKD2Q13563 968 aa10.47□□□□□ -0.73
CSDE1-204ENST00000369530 DHX57Q6P158 1386 aaKnown RBP10.47□□□□□ -0.73
CSDE1-204ENST00000369530 COL18A1P39060 1754 aa10.46□□□□□ -0.74
CSDE1-204ENST00000369530 LTKP29376 864 aa10.46□□□□□ -0.74
CSDE1-204ENST00000369530 BCL11AQ9H165 835 aa10.45□□□□□ -0.74
CSDE1-204ENST00000369530 PHLPP1O60346 1717 aa10.45□□□□□ -0.74
CSDE1-204ENST00000369530 QRICH2Q9H0J4 1663 aa10.45□□□□□ -0.74
CSDE1-204ENST00000369530 SETD5Q9C0A6 1442 aa10.45□□□□□ -0.74
CSDE1-204ENST00000369530 CAMTA1Q9Y6Y1 1673 aa10.44□□□□□ -0.74
CSDE1-204ENST00000369530 RIMS2Q9UQ26 1411 aa10.43□□□□□ -0.74
CSDE1-204ENST00000369530 LMO7Q8WWI1 1683 aa10.43□□□□□ -0.74
CSDE1-204ENST00000369530 PCGF6Q9BYE7 350 aa10.43□□□□□ -0.74
CSDE1-204ENST00000369530 PLCH1Q4KWH8 1693 aa10.42□□□□□ -0.74
CSDE1-204ENST00000369530 NWD2Q9ULI1 1742 aa10.42□□□□□ -0.74
CSDE1-204ENST00000369530 ERICH6Q7L0X2 663 aa10.42□□□□□ -0.74
CSDE1-204ENST00000369530 PXDNQ92626 1479 aa10.41□□□□□ -0.74
CSDE1-204ENST00000369530 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.41□□□□□ -0.74
CSDE1-204ENST00000369530 HNRNPUL2Q1KMD3 747 aaKnown RBP10.41□□□□□ -0.74
CSDE1-204ENST00000369530 KIF3BO15066 747 aa10.41□□□□□ -0.74
CSDE1-204ENST00000369530 RAB3GAP2Q9H2M9 1393 aa10.4□□□□□ -0.74
CSDE1-204ENST00000369530 IDI1Q13907 227 aa10.4□□□□□ -0.74
CSDE1-204ENST00000369530 COL24A1Q17RW2 1714 aa10.4□□□□□ -0.74
CSDE1-204ENST00000369530 NUP155O75694 1391 aa10.39□□□□□ -0.75
CSDE1-204ENST00000369530 FAM135BQ49AJ0 1406 aa10.38□□□□□ -0.75
CSDE1-204ENST00000369530 RRP7BPQ9NSQ0 103 aa10.38□□□□□ -0.75
CSDE1-204ENST00000369530 SLC52A1Q9NWF4 448 aa10.38□□□□□ -0.75
CSDE1-204ENST00000369530 SHANK3Q9BYB0 1731 aa10.37□□□□□ -0.75
CSDE1-204ENST00000369530 PIK3C2AO00443 1686 aa10.37□□□□□ -0.75
CSDE1-204ENST00000369530 GPRASP1Q5JY77 1395 aa10.36□□□□□ -0.75
CSDE1-204ENST00000369530 CENPBP07199 599 aaPredicted RBP10.36□□□□□ -0.75
CSDE1-204ENST00000369530 METP08581 1390 aa10.36□□□□□ -0.75
CSDE1-204ENST00000369530 TSPY4P0CV99 314 aa10.36□□□□□ -0.75
CSDE1-204ENST00000369530 TSPY10P0CW01 314 aa10.36□□□□□ -0.75
CSDE1-204ENST00000369530 PEAK1Q9H792 1746 aa10.36□□□□□ -0.75
CSDE1-204ENST00000369530 ZNF777Q9ULD5 760 aaPredicted RBP10.35□□□□□ -0.75
CSDE1-204ENST00000369530 TULP4Q9NRJ4 1543 aa10.35□□□□□ -0.75
CSDE1-204ENST00000369530 NCKAP5LQ9HCH0 1330 aa10.35□□□□□ -0.75
CSDE1-204ENST00000369530 THSD7AQ9UPZ6 1657 aa10.34□□□□□ -0.75
CSDE1-204ENST00000369530 WASHC2CQ9Y4E1 1318 aa10.34□□□□□ -0.75
CSDE1-204ENST00000369530 RGPD3A6NKT7 1758 aaPredicted RBP10.33□□□□□ -0.76
CSDE1-204ENST00000369530 RGPD4Q7Z3J3 1758 aa10.33□□□□□ -0.76
CSDE1-204ENST00000369530 HSPA2P54652 639 aa10.33□□□□□ -0.76
CSDE1-204ENST00000369530 ADGRL3Q9HAR2 1447 aa10.33□□□□□ -0.76
CSDE1-204ENST00000369530 KANK1Q14678 1352 aa10.33□□□□□ -0.76
CSDE1-204ENST00000369530 LRP6O75581 1613 aa10.32□□□□□ -0.76
CSDE1-204ENST00000369530 SSH2Q76I76 1423 aa10.31□□□□□ -0.76
CSDE1-204ENST00000369530 SIRT1Q96EB6 747 aa10.31□□□□□ -0.76
CSDE1-204ENST00000369530 ZNF335Q9H4Z2 1342 aaPredicted RBP10.31□□□□□ -0.76
CSDE1-204ENST00000369530 CD163L1Q9NR16 1453 aa10.3□□□□□ -0.76
CSDE1-204ENST00000369530 RPGRIP1LQ68CZ1 1315 aa10.3□□□□□ -0.76
CSDE1-204ENST00000369530 NEUROD1Q13562 356 aa10.3□□□□□ -0.76
CSDE1-204ENST00000369530 FBXO41Q8TF61 875 aa10.3□□□□□ -0.76
CSDE1-204ENST00000369530 TBX22Q9Y458 520 aa10.3□□□□□ -0.76
CSDE1-204ENST00000369530 ABCC6O95255 1503 aa10.3□□□□□ -0.76
CSDE1-204ENST00000369530 CERKQ8TCT0 537 aa10.29□□□□□ -0.76
CSDE1-204ENST00000369530 SLIT3O75094 1523 aa10.29□□□□□ -0.76
CSDE1-204ENST00000369530 ABCC11Q96J66 1382 aa10.29□□□□□ -0.76
CSDE1-204ENST00000369530 ATP7BP35670 1465 aa10.28□□□□□ -0.76
CSDE1-204ENST00000369530 ROBO2Q9HCK4 1378 aa10.28□□□□□ -0.76
CSDE1-204ENST00000369530 BRWD3Q6RI45 1802 aa10.28□□□□□ -0.76
CSDE1-204ENST00000369530 TNS1Q9HBL0 1735 aaKnown RBP10.28□□□□□ -0.76
CSDE1-204ENST00000369530 EP400Q96L91 3159 aa10.28□□□□□ -0.76
CSDE1-204ENST00000369530 RALGAPBQ86X10 1494 aa10.28□□□□□ -0.76
CSDE1-204ENST00000369530 TRIM26Q12899 539 aaPredicted RBP10.27□□□□□ -0.76
CSDE1-204ENST00000369530 GGT6Q6P531 493 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms