RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 SENP3-EIF4A1A0A087X0R7 540 aa18.96■□□□□ 0.63
CD48-201ENST00000368045 MYOM2P54296 1465 aa18.95■□□□□ 0.62
CD48-201ENST00000368045 EXOC6Q8TAG9 804 aa18.94■□□□□ 0.62
CD48-201ENST00000368045 ASXL1Q8IXJ9 1541 aa18.94■□□□□ 0.62
CD48-201ENST00000368045 TCERG1O14776 1098 aaKnown RBP18.93■□□□□ 0.62
CD48-201ENST00000368045 AMER1Q5JTC6 1135 aaPredicted RBP18.93■□□□□ 0.62
CD48-201ENST00000368045 PIK3C2GO75747 1445 aa18.93■□□□□ 0.62
CD48-201ENST00000368045 PPP2R1AP30153 589 aa18.92■□□□□ 0.62
CD48-201ENST00000368045 ANP32AP39687 249 aaKnown RBP18.92■□□□□ 0.62
CD48-201ENST00000368045 NOP58Q9Y2X3 529 aaKnown RBP18.92■□□□□ 0.62
CD48-201ENST00000368045 SALL2Q9Y467 1007 aaPredicted RBP18.91■□□□□ 0.62
CD48-201ENST00000368045 ADGRL1O94910 1474 aa18.91■□□□□ 0.62
CD48-201ENST00000368045 CDCA7LQ96GN5 454 aa18.91■□□□□ 0.62
CD48-201ENST00000368045 MS4A1P11836 297 aa18.9■□□□□ 0.62
CD48-201ENST00000368045 MROH1Q8NDA8 1641 aa18.89■□□□□ 0.61
CD48-201ENST00000368045 WDR43Q15061 677 aaKnown RBP eCLIP18.89■□□□□ 0.61
CD48-201ENST00000368045 LMTK2Q8IWU2 1503 aa18.89■□□□□ 0.61
CD48-201ENST00000368045 ADAMTS8Q9UP79 889 aa18.88■□□□□ 0.61
CD48-201ENST00000368045 KIF3BO15066 747 aa18.88■□□□□ 0.61
CD48-201ENST00000368045 EFCAB6Q5THR3 1501 aa18.88■□□□□ 0.61
CD48-201ENST00000368045 MAP3K4Q9Y6R4 1608 aa18.87■□□□□ 0.61
CD48-201ENST00000368045 IPO9Q96P70 1041 aaKnown RBP18.87■□□□□ 0.61
CD48-201ENST00000368045 MYOM1P52179 1685 aa18.86■□□□□ 0.61
CD48-201ENST00000368045 KDM5AP29375 1690 aaKnown RBP18.86■□□□□ 0.61
CD48-201ENST00000368045 NRXN1Q9ULB1 1477 aa18.84■□□□□ 0.61
CD48-201ENST00000368045 ZNF521Q96K83 1311 aa18.84■□□□□ 0.61
CD48-201ENST00000368045 SBNO2Q9Y2G9 1366 aa18.84■□□□□ 0.61
CD48-201ENST00000368045 ABCA6Q8N139 1617 aa18.83■□□□□ 0.6
CD48-201ENST00000368045 ASXL2Q76L83 1435 aa18.82■□□□□ 0.6
CD48-201ENST00000368045 NGEFQ8N5V2 710 aa18.82■□□□□ 0.6
CD48-201ENST00000368045 ERVK-7P63135 1459 aa18.81■□□□□ 0.6
CD48-201ENST00000368045 ZNF518AQ6AHZ1 1483 aa18.81■□□□□ 0.6
CD48-201ENST00000368045 PLEKHH1Q9ULM0 1364 aa18.81■□□□□ 0.6
CD48-201ENST00000368045 MYO3AQ8NEV4 1616 aa18.81■□□□□ 0.6
CD48-201ENST00000368045 IFT172Q9UG01 1749 aa18.8■□□□□ 0.6
CD48-201ENST00000368045 KIF1BO60333 1816 aa18.8■□□□□ 0.6
CD48-201ENST00000368045 GOLGA2Q08379 1002 aa18.8■□□□□ 0.6
CD48-201ENST00000368045 DUSP27Q5VZP5 1158 aa18.8■□□□□ 0.6
CD48-201ENST00000368045 CRBNQ96SW2 442 aa18.79■□□□□ 0.6
CD48-201ENST00000368045 SETBP1Q9Y6X0 1596 aa18.79■□□□□ 0.6
CD48-201ENST00000368045 CFAP70Q5T0N1 1121 aa18.78■□□□□ 0.6
CD48-201ENST00000368045 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.78■□□□□ 0.6
CD48-201ENST00000368045 PPRC1Q5VV67 1664 aaKnown RBP18.78■□□□□ 0.6
CD48-201ENST00000368045 KIDINS220Q9ULH0 1771 aa18.78■□□□□ 0.6
CD48-201ENST00000368045 ADGRF5Q8IZF2 1346 aa18.78■□□□□ 0.6
CD48-201ENST00000368045 ADGRB3O60242 1522 aa18.78■□□□□ 0.6
CD48-201ENST00000368045 ZBTB47Q9UFB7 747 aaPredicted RBP18.78■□□□□ 0.6
CD48-201ENST00000368045 PDE4AP27815 886 aa18.77■□□□□ 0.6
CD48-201ENST00000368045 CFAP74Q9C0B2 1584 aa18.76■□□□□ 0.59
CD48-201ENST00000368045 UGGT1Q9NYU2 1555 aa18.76■□□□□ 0.59
CD48-201ENST00000368045 PLIN1O60240 522 aa18.76■□□□□ 0.59
CD48-201ENST00000368045 BACH2Q9BYV9 841 aa18.76■□□□□ 0.59
CD48-201ENST00000368045 PAK3O75914 559 aaPredicted RBP18.76■□□□□ 0.59
CD48-201ENST00000368045 TRMT2AQ8IZ69 625 aaKnown RBP18.76■□□□□ 0.59
CD48-201ENST00000368045 SLFN5Q08AF3 891 aa18.75■□□□□ 0.59
CD48-201ENST00000368045 MLH3Q9UHC1 1453 aa18.73■□□□□ 0.59
CD48-201ENST00000368045 POGZQ7Z3K3 1410 aa18.72■□□□□ 0.59
CD48-201ENST00000368045 MROH2AA6NES4 1674 aa18.72■□□□□ 0.59
CD48-201ENST00000368045 RPGRIP1LQ68CZ1 1315 aa18.72■□□□□ 0.59
CD48-201ENST00000368045 CENPQQ7L2Z9 268 aaPredicted RBP18.71■□□□□ 0.59
CD48-201ENST00000368045 KDM2BQ8NHM5 1336 aa18.71■□□□□ 0.59
CD48-201ENST00000368045 CENPJQ9HC77 1338 aaPredicted RBP18.71■□□□□ 0.59
CD48-201ENST00000368045 POLR3AO14802 1390 aaPredicted RBP18.71■□□□□ 0.59
CD48-201ENST00000368045 NOS1P29475 1434 aa18.7■□□□□ 0.58
CD48-201ENST00000368045 CARD14Q9BXL6 1004 aa18.7■□□□□ 0.58
CD48-201ENST00000368045 E9PSI1 815 aa18.69■□□□□ 0.58
CD48-201ENST00000368045 NKTRP30414 1462 aaKnown RBP18.69■□□□□ 0.58
CD48-201ENST00000368045 NPM1P06748 294 aaKnown RBP eCLIP18.68■□□□□ 0.58
CD48-201ENST00000368045 NPATQ14207 1427 aa18.68■□□□□ 0.58
CD48-201ENST00000368045 C20orf194Q5TEA3 1177 aa18.68■□□□□ 0.58
CD48-201ENST00000368045 C14orf93Q9H972 538 aaKnown RBP18.68■□□□□ 0.58
CD48-201ENST00000368045 FRMPD1Q5SYB0 1578 aa18.67■□□□□ 0.58
CD48-201ENST00000368045 PUS7Q96PZ0 661 aaKnown RBP18.67■□□□□ 0.58
CD48-201ENST00000368045 CD109Q6YHK3 1445 aa18.66■□□□□ 0.58
CD48-201ENST00000368045 HECW2Q9P2P5 1572 aa18.66■□□□□ 0.58
CD48-201ENST00000368045 APAF1O14727 1248 aa18.65■□□□□ 0.58
CD48-201ENST00000368045 ADGRB1O14514 1584 aa18.65■□□□□ 0.58
CD48-201ENST00000368045 PPLO60437 1756 aa18.65■□□□□ 0.58
CD48-201ENST00000368045 NINLQ9Y2I6 1382 aa18.64■□□□□ 0.58
CD48-201ENST00000368045 USP32Q8NFA0 1604 aa18.64■□□□□ 0.57
CD48-201ENST00000368045 ABCC3O15438 1527 aa18.64■□□□□ 0.57
CD48-201ENST00000368045 ZC3H13Q5T200 1668 aaKnown RBP18.63■□□□□ 0.57
CD48-201ENST00000368045 CCDC146Q8IYE0 955 aa18.63■□□□□ 0.57
CD48-201ENST00000368045 BCL11AQ9H165 835 aa18.63■□□□□ 0.57
CD48-201ENST00000368045 DDRGK1Q96HY6 314 aa18.63■□□□□ 0.57
CD48-201ENST00000368045 NSD3Q9BZ95 1437 aa18.62■□□□□ 0.57
CD48-201ENST00000368045 NPM2Q86SE8 214 aaKnown RBP18.6■□□□□ 0.57
CD48-201ENST00000368045 NEO1Q92859 1461 aa18.6■□□□□ 0.57
CD48-201ENST00000368045 QRICH2Q9H0J4 1663 aa18.6■□□□□ 0.57
CD48-201ENST00000368045 CHGAP10645 457 aaKnown RBP18.6■□□□□ 0.57
CD48-201ENST00000368045 RTL5Q5HYW3 569 aaPredicted RBP18.6■□□□□ 0.57
CD48-201ENST00000368045 MORC1Q86VD1 984 aa18.6■□□□□ 0.57
CD48-201ENST00000368045 DEKP35659 375 aaKnown RBP18.59■□□□□ 0.57
CD48-201ENST00000368045 NCBP3Q53F19 620 aaKnown RBP18.59■□□□□ 0.57
CD48-201ENST00000368045 NBR1Q14596 966 aa18.58■□□□□ 0.57
CD48-201ENST00000368045 TRAK1Q9UPV9 953 aa18.58■□□□□ 0.57
CD48-201ENST00000368045 NSD2O96028 1365 aa18.58■□□□□ 0.56
CD48-201ENST00000368045 PDE3AQ14432 1141 aa18.58■□□□□ 0.56
CD48-201ENST00000368045 SPINK5Q9NQ38 1064 aaPredicted RBP18.58■□□□□ 0.56
CD48-201ENST00000368045 ARHGAP31Q2M1Z3 1444 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms