RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 TSR2Q969E8 191 aaKnown RBP17.33■□□□□ 0.37
COL6A1-201ENST00000361866 KCNJ4P48050 445 aa17.33■□□□□ 0.36
COL6A1-201ENST00000361866 EPRSP07814 1512 aaKnown RBP17.33■□□□□ 0.36
COL6A1-201ENST00000361866 RPRD2Q5VT52 1461 aaKnown RBP17.33■□□□□ 0.36
COL6A1-201ENST00000361866 RIPK4P57078 832 aa17.32■□□□□ 0.36
COL6A1-201ENST00000361866 DDX19BQ9UMR2 479 aa17.32■□□□□ 0.36
COL6A1-201ENST00000361866 ABCC5O15440 1437 aa17.32■□□□□ 0.36
COL6A1-201ENST00000361866 GRIN2BQ13224 1484 aa17.32■□□□□ 0.36
COL6A1-201ENST00000361866 AFAP1Q8N556 730 aa17.32■□□□□ 0.36
COL6A1-201ENST00000361866 SLC12A5Q9H2X9 1139 aa17.32■□□□□ 0.36
COL6A1-201ENST00000361866 WASHC2CQ9Y4E1 1318 aa17.32■□□□□ 0.36
COL6A1-201ENST00000361866 GGNBP2Q9H3C7 697 aa17.32■□□□□ 0.36
COL6A1-201ENST00000361866 SUPT6HQ7KZ85 1726 aaKnown RBP17.32■□□□□ 0.36
COL6A1-201ENST00000361866 MRC2Q9UBG0 1479 aa17.32■□□□□ 0.36
COL6A1-201ENST00000361866 NUTM2FA1L443 756 aa17.31■□□□□ 0.36
COL6A1-201ENST00000361866 TERF2IPQ9NYB0 399 aa17.31■□□□□ 0.36
COL6A1-201ENST00000361866 SLFN5Q08AF3 891 aa17.3■□□□□ 0.36
COL6A1-201ENST00000361866 TRIM6-TRIM34B2RNG4 842 aa17.3■□□□□ 0.36
COL6A1-201ENST00000361866 MINK1Q8N4C8 1332 aaPredicted RBP17.3■□□□□ 0.36
COL6A1-201ENST00000361866 PDE3AQ14432 1141 aa17.3■□□□□ 0.36
COL6A1-201ENST00000361866 C9orf84Q5VXU9 1444 aa17.3■□□□□ 0.36
COL6A1-201ENST00000361866 MCCP23508 829 aa17.28■□□□□ 0.36
COL6A1-201ENST00000361866 EXOSC9Q06265 439 aaKnown RBP17.28■□□□□ 0.36
COL6A1-201ENST00000361866 DUSP27Q5VZP5 1158 aa17.28■□□□□ 0.36
COL6A1-201ENST00000361866 C1orf115Q9H7X2 142 aa17.26■□□□□ 0.35
COL6A1-201ENST00000361866 GOLGA6L4A6NEF3 574 aa17.26■□□□□ 0.35
COL6A1-201ENST00000361866 ROCK1Q13464 1354 aa17.26■□□□□ 0.35
COL6A1-201ENST00000361866 HMOX1P09601 288 aa17.26■□□□□ 0.35
COL6A1-201ENST00000361866 PTMSP20962 102 aa17.26■□□□□ 0.35
COL6A1-201ENST00000361866 RTF1Q92541 710 aaKnown RBP17.26■□□□□ 0.35
COL6A1-201ENST00000361866 CABP2Q9NPB3 220 aa17.26■□□□□ 0.35
COL6A1-201ENST00000361866 FAM43AQ8N2R8 423 aa17.25■□□□□ 0.35
COL6A1-201ENST00000361866 NGEFQ8N5V2 710 aa17.25■□□□□ 0.35
COL6A1-201ENST00000361866 BIVM-ERCC5R4GMW8 1640 aa17.25■□□□□ 0.35
COL6A1-201ENST00000361866 TROQ12816 1431 aaPredicted RBP17.25■□□□□ 0.35
COL6A1-201ENST00000361866 ERBINQ96RT1 1412 aa17.25■□□□□ 0.35
COL6A1-201ENST00000361866 UNC13AQ9UPW8 1703 aa17.25■□□□□ 0.35
COL6A1-201ENST00000361866 FAM13BQ9NYF5 915 aa17.25■□□□□ 0.35
COL6A1-201ENST00000361866 PEG3Q9GZU2 1588 aa17.24■□□□□ 0.35
COL6A1-201ENST00000361866 ST18O60284 1047 aa17.24■□□□□ 0.35
COL6A1-201ENST00000361866 MRE11P49959 708 aa17.24■□□□□ 0.35
COL6A1-201ENST00000361866 NAP1L2Q9ULW6 460 aaPredicted RBP17.24■□□□□ 0.35
COL6A1-201ENST00000361866 FGD1P98174 961 aa17.24■□□□□ 0.35
COL6A1-201ENST00000361866 IGHDP01880 384 aa17.24■□□□□ 0.35
COL6A1-201ENST00000361866 KIAA2012Q0VF49 1180 aa17.24■□□□□ 0.35
COL6A1-201ENST00000361866 LMOD2Q6P5Q4 547 aa17.23■□□□□ 0.35
COL6A1-201ENST00000361866 WWC1Q8IX03 1113 aa17.23■□□□□ 0.35
COL6A1-201ENST00000361866 MCTP1Q6DN14 999 aa17.23■□□□□ 0.35
COL6A1-201ENST00000361866 DRC7Q8IY82 874 aa17.23■□□□□ 0.35
COL6A1-201ENST00000361866 PKNOX2Q96KN3 472 aa17.23■□□□□ 0.35
COL6A1-201ENST00000361866 ABCA10Q8WWZ4 1543 aa17.23■□□□□ 0.35
COL6A1-201ENST00000361866 MCM4P33991 863 aa17.23■□□□□ 0.35
COL6A1-201ENST00000361866 EVC2Q86UK5 1308 aa17.22■□□□□ 0.35
COL6A1-201ENST00000361866 DIAPH1O60610 1272 aaKnown RBP17.22■□□□□ 0.35
COL6A1-201ENST00000361866 SKOR2Q2VWA4 1001 aaPredicted RBP17.22■□□□□ 0.35
COL6A1-201ENST00000361866 IFT140Q96RY7 1462 aa17.22■□□□□ 0.35
COL6A1-201ENST00000361866 RILPL2Q969X0 211 aa17.21■□□□□ 0.35
COL6A1-201ENST00000361866 ZRSR1Q15695 479 aaKnown RBP17.2■□□□□ 0.34
COL6A1-201ENST00000361866 CFAP44Q96MT7 982 aa17.2■□□□□ 0.34
COL6A1-201ENST00000361866 CHAF1AQ13111 956 aaPredicted RBP17.2■□□□□ 0.34
COL6A1-201ENST00000361866 AMER1Q5JTC6 1135 aaPredicted RBP17.2■□□□□ 0.34
COL6A1-201ENST00000361866 HAP1P54257 671 aaPredicted RBP17.2■□□□□ 0.34
COL6A1-201ENST00000361866 KIAA1211Q6ZU35 1233 aa17.2■□□□□ 0.34
COL6A1-201ENST00000361866 RNF214Q8ND24 703 aa17.19■□□□□ 0.34
COL6A1-201ENST00000361866 NOB1Q9ULX3 412 aaKnown RBP17.19■□□□□ 0.34
COL6A1-201ENST00000361866 DHX29Q7Z478 1369 aaKnown RBP17.18■□□□□ 0.34
COL6A1-201ENST00000361866 NASPP49321 788 aaPredicted RBP17.18■□□□□ 0.34
COL6A1-201ENST00000361866 TBC1D2Q9BYX2 928 aa17.18■□□□□ 0.34
COL6A1-201ENST00000361866 DISP3Q9P2K9 1392 aa17.18■□□□□ 0.34
COL6A1-201ENST00000361866 DNMBPQ6XZF7 1577 aa17.17■□□□□ 0.34
COL6A1-201ENST00000361866 HECW1Q76N89 1606 aa17.17■□□□□ 0.34
COL6A1-201ENST00000361866 HMMRO75330 724 aa17.17■□□□□ 0.34
COL6A1-201ENST00000361866 CAVIN1Q6NZI2 390 aaKnown RBP17.16■□□□□ 0.34
COL6A1-201ENST00000361866 NECTIN2Q92692 538 aa17.16■□□□□ 0.34
COL6A1-201ENST00000361866 STK31Q9BXU1 1019 aa17.16■□□□□ 0.34
COL6A1-201ENST00000361866 C8orf34Q49A92 452 aa17.16■□□□□ 0.34
COL6A1-201ENST00000361866 SYAP1Q96A49 352 aaPredicted RBP17.16■□□□□ 0.34
COL6A1-201ENST00000361866 MVPQ14764 893 aaKnown RBP17.16■□□□□ 0.34
COL6A1-201ENST00000361866 KIF16BQ96L93 1317 aa17.15■□□□□ 0.34
COL6A1-201ENST00000361866 VGFO15240 615 aaPredicted RBP17.15■□□□□ 0.34
COL6A1-201ENST00000361866 MPNDQ8N594 471 aa17.15■□□□□ 0.34
COL6A1-201ENST00000361866 RARSP54136 660 aaKnown RBP17.14■□□□□ 0.33
COL6A1-201ENST00000361866 GRPEL1Q9HAV7 217 aa17.14■□□□□ 0.33
COL6A1-201ENST00000361866 R3HCC1Q9Y3T6 440 aaKnown RBP17.14■□□□□ 0.33
COL6A1-201ENST00000361866 PLB1Q6P1J6 1458 aa17.13■□□□□ 0.33
COL6A1-201ENST00000361866 SEC24BO95487 1268 aa17.13■□□□□ 0.33
COL6A1-201ENST00000361866 SNAPC4Q5SXM2 1469 aa17.13■□□□□ 0.33
COL6A1-201ENST00000361866 LTV1Q96GA3 475 aaPredicted RBP17.12■□□□□ 0.33
COL6A1-201ENST00000361866 CAMSAP2Q08AD1 1489 aa17.12■□□□□ 0.33
COL6A1-201ENST00000361866 LAMC3Q9Y6N6 1575 aa17.12■□□□□ 0.33
COL6A1-201ENST00000361866 ATF7IPQ6VMQ6 1270 aa17.12■□□□□ 0.33
COL6A1-201ENST00000361866 RBM10P98175 930 aaKnown RBP17.12■□□□□ 0.33
COL6A1-201ENST00000361866 CHMP3Q9Y3E7 222 aa17.12■□□□□ 0.33
COL6A1-201ENST00000361866 AAMPQ13685 434 aa17.11■□□□□ 0.33
COL6A1-201ENST00000361866 ANO2Q9NQ90 1003 aa17.11■□□□□ 0.33
COL6A1-201ENST00000361866 ESPNB1AK53 854 aa17.11■□□□□ 0.33
COL6A1-201ENST00000361866 TNNQ9UQP3 1299 aa17.11■□□□□ 0.33
COL6A1-201ENST00000361866 ARHGEF11O15085 1522 aa17.11■□□□□ 0.33
COL6A1-201ENST00000361866 PRKAR2BP31323 418 aa17.1■□□□□ 0.33
COL6A1-201ENST00000361866 LMOD3Q0VAK6 560 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms