RNA–Protein interactions for RNA: ENST00000361115.4

CCL28-201, Transcript of C-C motif chemokine ligand 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCL28, Length 3,126 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-201ENST00000361115 LAMC1P11047 1609 aa11.41□□□□□ -0.58
CCL28-201ENST00000361115 AMER1Q5JTC6 1135 aaPredicted RBP11.41□□□□□ -0.58
CCL28-201ENST00000361115 ATP1B4Q9UN42 357 aaPredicted RBP11.41□□□□□ -0.58
CCL28-201ENST00000361115 BCL11AQ9H165 835 aa11.4□□□□□ -0.58
CCL28-201ENST00000361115 CHD2O14647 1828 aaKnown RBP11.4□□□□□ -0.58
CCL28-201ENST00000361115 HDGFP51858 240 aaKnown RBP11.4□□□□□ -0.58
CCL28-201ENST00000361115 ROBO1Q9Y6N7 1651 aa11.4□□□□□ -0.58
CCL28-201ENST00000361115 PHLPP1O60346 1717 aa11.4□□□□□ -0.59
CCL28-201ENST00000361115 EID1Q9Y6B2 187 aa11.4□□□□□ -0.59
CCL28-201ENST00000361115 SPATA31A6Q5VVP1 1343 aa11.39□□□□□ -0.59
CCL28-201ENST00000361115 IQGAP3Q86VI3 1631 aa11.39□□□□□ -0.59
CCL28-201ENST00000361115 NOS1P29475 1434 aa11.39□□□□□ -0.59
CCL28-201ENST00000361115 TMEM2Q9UHN6 1383 aa11.38□□□□□ -0.59
CCL28-201ENST00000361115 GGT6Q6P531 493 aa11.38□□□□□ -0.59
CCL28-201ENST00000361115 JCADQ9P266 1359 aa11.38□□□□□ -0.59
CCL28-201ENST00000361115 COL16A1Q07092 1604 aaPredicted RBP11.37□□□□□ -0.59
CCL28-201ENST00000361115 UNC13BO14795 1591 aa11.37□□□□□ -0.59
CCL28-201ENST00000361115 KCNA6P17658 529 aa11.37□□□□□ -0.59
CCL28-201ENST00000361115 VPS8Q8N3P4 1428 aa11.36□□□□□ -0.59
CCL28-201ENST00000361115 KIF3BO15066 747 aa11.36□□□□□ -0.59
CCL28-201ENST00000361115 PLEKHG1Q9ULL1 1385 aa11.36□□□□□ -0.59
CCL28-201ENST00000361115 PRAG1Q86YV5 1406 aa11.36□□□□□ -0.59
CCL28-201ENST00000361115 TRPM2O94759 1503 aa11.36□□□□□ -0.59
CCL28-201ENST00000361115 ZNF316A6NFI3 1004 aaPredicted RBP11.35□□□□□ -0.59
CCL28-201ENST00000361115 ZNF777Q9ULD5 760 aaPredicted RBP11.35□□□□□ -0.59
CCL28-201ENST00000361115 SLC52A1Q9NWF4 448 aa11.35□□□□□ -0.59
CCL28-201ENST00000361115 MSH6P52701 1360 aa11.33□□□□□ -0.6
CCL28-201ENST00000361115 MIER1Q8N108 512 aa11.33□□□□□ -0.6
CCL28-201ENST00000361115 NHSL1Q5SYE7 1610 aa11.33□□□□□ -0.6
CCL28-201ENST00000361115 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.32□□□□□ -0.6
CCL28-201ENST00000361115 ZNF772Q68DY9 489 aaPredicted RBP11.31□□□□□ -0.6
CCL28-201ENST00000361115 ANKRD30AQ9BXX3 1397 aa11.31□□□□□ -0.6
CCL28-201ENST00000361115 ZFYVE9O95405 1425 aa11.3□□□□□ -0.6
CCL28-201ENST00000361115 TMEM131LA2VDJ0 1609 aa11.3□□□□□ -0.6
CCL28-201ENST00000361115 XRN1Q8IZH2 1706 aaKnown RBP11.29□□□□□ -0.6
CCL28-201ENST00000361115 SETBP1Q9Y6X0 1596 aa11.29□□□□□ -0.6
CCL28-201ENST00000361115 KIF15Q9NS87 1388 aa11.28□□□□□ -0.6
CCL28-201ENST00000361115 RANGAP1P46060 587 aaPredicted RBP11.28□□□□□ -0.6
CCL28-201ENST00000361115 DAPK1P53355 1430 aa11.28□□□□□ -0.6
CCL28-201ENST00000361115 SPHKAPQ2M3C7 1700 aa11.27□□□□□ -0.61
CCL28-201ENST00000361115 COL22A1Q8NFW1 1626 aaPredicted RBP11.27□□□□□ -0.61
CCL28-201ENST00000361115 SETD5Q9C0A6 1442 aa11.27□□□□□ -0.61
CCL28-201ENST00000361115 PIP4K2BP78356 416 aa11.26□□□□□ -0.61
CCL28-201ENST00000361115 TBX22Q9Y458 520 aa11.26□□□□□ -0.61
CCL28-201ENST00000361115 TMEM94Q12767 1356 aa11.25□□□□□ -0.61
CCL28-201ENST00000361115 ABCC5O15440 1437 aa11.25□□□□□ -0.61
CCL28-201ENST00000361115 TXNDC2Q86VQ3 553 aa11.25□□□□□ -0.61
CCL28-201ENST00000361115 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.25□□□□□ -0.61
CCL28-201ENST00000361115 FBXO31Q5XUX0 539 aaPredicted RBP11.24□□□□□ -0.61
CCL28-201ENST00000361115 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.24□□□□□ -0.61
CCL28-201ENST00000361115 ROCK1Q13464 1354 aa11.24□□□□□ -0.61
CCL28-201ENST00000361115 PTCH1Q13635 1447 aa11.23□□□□□ -0.61
CCL28-201ENST00000361115 CADPS2Q86UW7 1296 aa11.22□□□□□ -0.61
CCL28-201ENST00000361115 ANP32EQ9BTT0 268 aa11.22□□□□□ -0.61
CCL28-201ENST00000361115 RGS17Q9UGC6 210 aaPredicted RBP11.2□□□□□ -0.62
CCL28-201ENST00000361115 ZNF644Q9H582 1327 aaPredicted RBP11.2□□□□□ -0.62
CCL28-201ENST00000361115 RIMS2Q9UQ26 1411 aa11.2□□□□□ -0.62
CCL28-201ENST00000361115 CCDC125Q86Z20 511 aa11.19□□□□□ -0.62
CCL28-201ENST00000361115 SUPT16HQ9Y5B9 1047 aaKnown RBP11.19□□□□□ -0.62
CCL28-201ENST00000361115 LRP5O75197 1615 aa11.19□□□□□ -0.62
CCL28-201ENST00000361115 ASXL1Q8IXJ9 1541 aa11.19□□□□□ -0.62
CCL28-201ENST00000361115 TSHZ2Q9NRE2 1034 aa11.18□□□□□ -0.62
CCL28-201ENST00000361115 MARF1Q9Y4F3 1742 aaKnown RBP11.18□□□□□ -0.62
CCL28-201ENST00000361115 LTKP29376 864 aa11.17□□□□□ -0.62
CCL28-201ENST00000361115 PROSER2Q86WR7 435 aaPredicted RBP11.16□□□□□ -0.62
CCL28-201ENST00000361115 E9PCH4 1651 aa11.16□□□□□ -0.62
CCL28-201ENST00000361115 SLAIN2Q9P270 581 aa11.15□□□□□ -0.62
CCL28-201ENST00000361115 ADAMTS13Q76LX8 1427 aa11.15□□□□□ -0.62
CCL28-201ENST00000361115 MYO5BQ9ULV0 1848 aa11.15□□□□□ -0.62
CCL28-201ENST00000361115 EIF5BO60841 1220 aaKnown RBP11.15□□□□□ -0.63
CCL28-201ENST00000361115 NCBP3Q53F19 620 aaKnown RBP11.15□□□□□ -0.63
CCL28-201ENST00000361115 C19orf44Q9H6X5 657 aa11.15□□□□□ -0.63
CCL28-201ENST00000361115 KIF1AQ12756 1690 aa11.15□□□□□ -0.63
CCL28-201ENST00000361115 STAG3Q9UJ98 1225 aa11.14□□□□□ -0.63
CCL28-201ENST00000361115 ATAD2Q6PL18 1390 aa11.14□□□□□ -0.63
CCL28-201ENST00000361115 ADGRL3Q9HAR2 1447 aa11.14□□□□□ -0.63
CCL28-201ENST00000361115 KNDC1Q76NI1 1749 aa11.14□□□□□ -0.63
CCL28-201ENST00000361115 NRXN3Q9Y4C0 1643 aa11.13□□□□□ -0.63
CCL28-201ENST00000361115 LRP6O75581 1613 aa11.13□□□□□ -0.63
CCL28-201ENST00000361115 CDC42BPGQ6DT37 1551 aa11.13□□□□□ -0.63
CCL28-201ENST00000361115 ANKRD50Q9ULJ7 1429 aa11.13□□□□□ -0.63
CCL28-201ENST00000361115 POTEAQ6S8J7 498 aa11.11□□□□□ -0.63
CCL28-201ENST00000361115 MST1RQ04912 1400 aa11.1□□□□□ -0.63
CCL28-201ENST00000361115 NALCNQ8IZF0 1738 aa11.1□□□□□ -0.63
CCL28-201ENST00000361115 KIF1BO60333 1816 aa11.1□□□□□ -0.63
CCL28-201ENST00000361115 UPF1Q92900 1129 aaKnown RBP eCLIP11.1□□□□□ -0.63
CCL28-201ENST00000361115 NGLY1Q96IV0 654 aa11.1□□□□□ -0.63
CCL28-201ENST00000361115 HFM1A2PYH4 1435 aa11.09□□□□□ -0.63
CCL28-201ENST00000361115 RXRBP28702 533 aa11.09□□□□□ -0.63
CCL28-201ENST00000361115 IDI1Q13907 227 aa11.09□□□□□ -0.63
CCL28-201ENST00000361115 ATF3P18847 181 aa11.09□□□□□ -0.63
CCL28-201ENST00000361115 NWD2Q9ULI1 1742 aa11.09□□□□□ -0.63
CCL28-201ENST00000361115 LRRC59Q96AG4 307 aaKnown RBP11.08□□□□□ -0.64
CCL28-201ENST00000361115 RBM6P78332 1123 aaKnown RBP11.08□□□□□ -0.64
CCL28-201ENST00000361115 RPGRIP1LQ68CZ1 1315 aa11.08□□□□□ -0.64
CCL28-201ENST00000361115 CLSPNQ9HAW4 1339 aa11.08□□□□□ -0.64
CCL28-201ENST00000361115 LRPPRCP42704 1394 aaKnown RBP11.07□□□□□ -0.64
CCL28-201ENST00000361115 ATRNO75882 1429 aa11.07□□□□□ -0.64
CCL28-201ENST00000361115 PPP1R15AO75807 674 aaPredicted RBP11.07□□□□□ -0.64
CCL28-201ENST00000361115 MEX3CQ5U5Q3 659 aaKnown RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms