RNA–Protein interactions for RNA: ENST00000357890.9

RNF40-202, Transcript of ring finger protein 40, humanhuman

TSL 2 BASIC

Gene RNF40, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-202ENST00000357890 GOLGA2Q08379 1002 aa12.82□□□□□ -0.36
RNF40-202ENST00000357890 RNF123Q5XPI4 1314 aa12.82□□□□□ -0.36
RNF40-202ENST00000357890 UHRF1BP1LA0JNW5 1464 aa12.82□□□□□ -0.36
RNF40-202ENST00000357890 GOLGA6L3A6NEY3 463 aa12.81□□□□□ -0.36
RNF40-202ENST00000357890 MS4A1P11836 297 aa12.81□□□□□ -0.36
RNF40-202ENST00000357890 LRPPRCP42704 1394 aaKnown RBP12.81□□□□□ -0.36
RNF40-202ENST00000357890 SYCP2Q9BX26 1530 aa12.81□□□□□ -0.36
RNF40-202ENST00000357890 KIF3BO15066 747 aa12.81□□□□□ -0.36
RNF40-202ENST00000357890 ARHGEF5Q12774 1597 aa12.8□□□□□ -0.36
RNF40-202ENST00000357890 BCORL1Q5H9F3 1711 aa12.8□□□□□ -0.36
RNF40-202ENST00000357890 STAC3Q96MF2 364 aa12.8□□□□□ -0.36
RNF40-202ENST00000357890 SENP3Q9H4L4 574 aaPredicted RBP12.8□□□□□ -0.36
RNF40-202ENST00000357890 CROCC2H7BZ55 1655 aa12.8□□□□□ -0.36
RNF40-202ENST00000357890 PARD3Q8TEW0 1356 aa12.79□□□□□ -0.36
RNF40-202ENST00000357890 ZBTB7CA1YPR0 619 aa12.79□□□□□ -0.36
RNF40-202ENST00000357890 AFAP1Q8N556 730 aa12.79□□□□□ -0.36
RNF40-202ENST00000357890 ERCC6L2Q5T890 1561 aa12.79□□□□□ -0.36
RNF40-202ENST00000357890 CDC42BPAQ5VT25 1732 aa12.79□□□□□ -0.36
RNF40-202ENST00000357890 EIF3AQ14152 1382 aaKnown RBP12.79□□□□□ -0.36
RNF40-202ENST00000357890 KDM5DQ9BY66 1539 aa12.79□□□□□ -0.36
RNF40-202ENST00000357890 POGKQ9P215 609 aa12.79□□□□□ -0.36
RNF40-202ENST00000357890 DISP3Q9P2K9 1392 aa12.78□□□□□ -0.36
RNF40-202ENST00000357890 PER1O15534 1290 aaPredicted RBP12.78□□□□□ -0.36
RNF40-202ENST00000357890 TESK2Q96S53 571 aa12.78□□□□□ -0.36
RNF40-202ENST00000357890 FAM161AQ3B820 660 aa12.77□□□□□ -0.37
RNF40-202ENST00000357890 C20orf194Q5TEA3 1177 aa12.76□□□□□ -0.37
RNF40-202ENST00000357890 POLR1AO95602 1720 aaPredicted RBP12.76□□□□□ -0.37
RNF40-202ENST00000357890 APAF1O14727 1248 aa12.76□□□□□ -0.37
RNF40-202ENST00000357890 PPP2R1AP30153 589 aa12.75□□□□□ -0.37
RNF40-202ENST00000357890 CENPQQ7L2Z9 268 aaPredicted RBP12.75□□□□□ -0.37
RNF40-202ENST00000357890 A2MP01023 1474 aa12.75□□□□□ -0.37
RNF40-202ENST00000357890 GPRASP1Q5JY77 1395 aa12.75□□□□□ -0.37
RNF40-202ENST00000357890 AMER1Q5JTC6 1135 aaPredicted RBP12.75□□□□□ -0.37
RNF40-202ENST00000357890 SAMD9LQ8IVG5 1584 aa12.74□□□□□ -0.37
RNF40-202ENST00000357890 DUOX2Q9NRD8 1548 aa12.74□□□□□ -0.37
RNF40-202ENST00000357890 NCLP19338 710 aaKnown RBP12.74□□□□□ -0.37
RNF40-202ENST00000357890 MYH16Q9H6N6 1097 aa12.74□□□□□ -0.37
RNF40-202ENST00000357890 COL17A1Q9UMD9 1497 aaPredicted RBP12.73□□□□□ -0.37
RNF40-202ENST00000357890 PLCH2O75038 1416 aa12.72□□□□□ -0.37
RNF40-202ENST00000357890 WDR7Q9Y4E6 1490 aa12.71□□□□□ -0.37
RNF40-202ENST00000357890 ASXL2Q76L83 1435 aa12.71□□□□□ -0.38
RNF40-202ENST00000357890 PREX2Q70Z35 1606 aa12.7□□□□□ -0.38
RNF40-202ENST00000357890 RRP7AQ9Y3A4 280 aaKnown RBP12.69□□□□□ -0.38
RNF40-202ENST00000357890 PLA2R1Q13018 1463 aa12.69□□□□□ -0.38
RNF40-202ENST00000357890 EIF2AK4Q9P2K8 1649 aaKnown RBP12.69□□□□□ -0.38
RNF40-202ENST00000357890 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.69□□□□□ -0.38
RNF40-202ENST00000357890 CFAP70Q5T0N1 1121 aa12.69□□□□□ -0.38
RNF40-202ENST00000357890 CLUAP1Q96AJ1 413 aa12.69□□□□□ -0.38
RNF40-202ENST00000357890 MORC1Q86VD1 984 aa12.69□□□□□ -0.38
RNF40-202ENST00000357890 COG6Q9Y2V7 657 aa12.68□□□□□ -0.38
RNF40-202ENST00000357890 GGT6Q6P531 493 aa12.68□□□□□ -0.38
RNF40-202ENST00000357890 BCL2L13Q9BXK5 485 aa12.68□□□□□ -0.38
RNF40-202ENST00000357890 TRAPPC8Q9Y2L5 1435 aa12.68□□□□□ -0.38
RNF40-202ENST00000357890 CFAP53Q96M91 514 aa12.67□□□□□ -0.38
RNF40-202ENST00000357890 RRAGDQ9NQL2 400 aaPredicted RBP12.67□□□□□ -0.38
RNF40-202ENST00000357890 FAM13BQ9NYF5 915 aa12.67□□□□□ -0.38
RNF40-202ENST00000357890 BCAR3O75815 825 aa12.67□□□□□ -0.38
RNF40-202ENST00000357890 FAM69CQ0P6D2 419 aa12.67□□□□□ -0.38
RNF40-202ENST00000357890 MSNP26038 577 aaKnown RBP12.67□□□□□ -0.38
RNF40-202ENST00000357890 RBM10P98175 930 aaKnown RBP12.66□□□□□ -0.38
RNF40-202ENST00000357890 SCAF11Q99590 1463 aaKnown RBP12.66□□□□□ -0.38
RNF40-202ENST00000357890 CENPJQ9HC77 1338 aaPredicted RBP12.66□□□□□ -0.38
RNF40-202ENST00000357890 TTC37Q6PGP7 1564 aa12.66□□□□□ -0.38
RNF40-202ENST00000357890 PLEKHG5O94827 1062 aa12.66□□□□□ -0.38
RNF40-202ENST00000357890 FTSJ3Q8IY81 847 aaKnown RBP12.66□□□□□ -0.38
RNF40-202ENST00000357890 SCAPERQ9BY12 1400 aa12.65□□□□□ -0.38
RNF40-202ENST00000357890 E9PSI1 815 aa12.65□□□□□ -0.38
RNF40-202ENST00000357890 FOXD4L1Q9NU39 408 aa12.65□□□□□ -0.38
RNF40-202ENST00000357890 DNTTIP2Q5QJE6 756 aaKnown RBP12.65□□□□□ -0.38
RNF40-202ENST00000357890 TRAK1Q9UPV9 953 aa12.65□□□□□ -0.38
RNF40-202ENST00000357890 INSRP06213 1382 aa12.65□□□□□ -0.38
RNF40-202ENST00000357890 NGEFQ8N5V2 710 aa12.64□□□□□ -0.39
RNF40-202ENST00000357890 ZCCHC11Q5TAX3 1644 aaKnown RBP12.64□□□□□ -0.39
RNF40-202ENST00000357890 CDC42BPBQ9Y5S2 1711 aa12.64□□□□□ -0.39
RNF40-202ENST00000357890 RRP9O43818 475 aaKnown RBP12.64□□□□□ -0.39
RNF40-202ENST00000357890 CD109Q6YHK3 1445 aa12.64□□□□□ -0.39
RNF40-202ENST00000357890 TPRNQ4KMQ1 711 aa12.64□□□□□ -0.39
RNF40-202ENST00000357890 PANK1Q8TE04 598 aa12.64□□□□□ -0.39
RNF40-202ENST00000357890 TRPM1Q7Z4N2 1603 aa12.63□□□□□ -0.39
RNF40-202ENST00000357890 SAFB2Q14151 953 aaKnown RBP eCLIP12.63□□□□□ -0.39
RNF40-202ENST00000357890 MAST1Q9Y2H9 1570 aa12.63□□□□□ -0.39
RNF40-202ENST00000357890 MFAP1P55081 439 aaKnown RBP12.63□□□□□ -0.39
RNF40-202ENST00000357890 DUSP27Q5VZP5 1158 aa12.63□□□□□ -0.39
RNF40-202ENST00000357890 U2SURPO15042 1029 aaKnown RBP12.62□□□□□ -0.39
RNF40-202ENST00000357890 PRDM15P57071 1507 aaPredicted RBP12.62□□□□□ -0.39
RNF40-202ENST00000357890 PANK2Q9BZ23 570 aa12.62□□□□□ -0.39
RNF40-202ENST00000357890 BLMP54132 1417 aaPredicted RBP12.62□□□□□ -0.39
RNF40-202ENST00000357890 MYO5CQ9NQX4 1742 aa12.62□□□□□ -0.39
RNF40-202ENST00000357890 ATP10AO60312 1499 aa12.62□□□□□ -0.39
RNF40-202ENST00000357890 UNC13BO14795 1591 aa12.61□□□□□ -0.39
RNF40-202ENST00000357890 HSP90AB1P08238 724 aaKnown RBP12.61□□□□□ -0.39
RNF40-202ENST00000357890 U2AF1L5P0DN76 240 aaPredicted RBP12.61□□□□□ -0.39
RNF40-202ENST00000357890 U2AF1Q01081 240 aaKnown RBP eCLIP12.61□□□□□ -0.39
RNF40-202ENST00000357890 SLFN5Q08AF3 891 aa12.61□□□□□ -0.39
RNF40-202ENST00000357890 HSCBQ8IWL3 235 aa12.61□□□□□ -0.39
RNF40-202ENST00000357890 RTEL1-TNFRSF6BF6WH68 1400 aa12.61□□□□□ -0.39
RNF40-202ENST00000357890 PTMAP06454 111 aaKnown RBP12.6□□□□□ -0.39
RNF40-202ENST00000357890 PLXNC1O60486 1568 aa12.6□□□□□ -0.39
RNF40-202ENST00000357890 IQGAP3Q86VI3 1631 aa12.6□□□□□ -0.39
RNF40-202ENST00000357890 TRHP20396 242 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms