RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 GPRASP1Q5JY77 1395 aa26.33■■□□□ 1.8
CLN3-204ENST00000357857 NEXMIFQ5QGS0 1516 aa26.32■■□□□ 1.8
CLN3-204ENST00000357857 NRXN1Q9ULB1 1477 aa26.32■■□□□ 1.8
CLN3-204ENST00000357857 TNRQ92752 1358 aa26.3■■□□□ 1.8
CLN3-204ENST00000357857 NBPF1Q3BBV0 1214 aa26.29■■□□□ 1.8
CLN3-204ENST00000357857 ADGRF5Q8IZF2 1346 aa26.29■■□□□ 1.8
CLN3-204ENST00000357857 STAG3Q9UJ98 1225 aa26.26■■□□□ 1.79
CLN3-204ENST00000357857 ADAMTSL3P82987 1691 aa26.26■■□□□ 1.79
CLN3-204ENST00000357857 RIMS1Q86UR5 1692 aaKnown RBP26.26■■□□□ 1.79
CLN3-204ENST00000357857 POLR1AO95602 1720 aaPredicted RBP26.24■■□□□ 1.79
CLN3-204ENST00000357857 A2ML1A8K2U0 1454 aa26.23■■□□□ 1.79
CLN3-204ENST00000357857 KDM5AP29375 1690 aaKnown RBP26.23■■□□□ 1.79
CLN3-204ENST00000357857 PIK3C2GO75747 1445 aa26.23■■□□□ 1.79
CLN3-204ENST00000357857 CEBPAP49715 358 aaPredicted RBP26.22■■□□□ 1.79
CLN3-204ENST00000357857 ZFYVE9O95405 1425 aa26.22■■□□□ 1.79
CLN3-204ENST00000357857 VGFO15240 615 aaPredicted RBP26.22■■□□□ 1.79
CLN3-204ENST00000357857 IQGAP1P46940 1657 aa26.21■■□□□ 1.79
CLN3-204ENST00000357857 NLRP1Q9C000 1473 aa26.19■■□□□ 1.78
CLN3-204ENST00000357857 UBR1Q8IWV7 1749 aa26.18■■□□□ 1.78
CLN3-204ENST00000357857 CFAP70Q5T0N1 1121 aa26.18■■□□□ 1.78
CLN3-204ENST00000357857 SETBP1Q9Y6X0 1596 aa26.17■■□□□ 1.78
CLN3-204ENST00000357857 NUTM2DQ5VT03 806 aaPredicted RBP26.17■■□□□ 1.78
CLN3-204ENST00000357857 ST20-MTHFSA0A0A6YYL1 179 aa26.15■■□□□ 1.78
CLN3-204ENST00000357857 WASHC2AQ641Q2 1341 aa26.15■■□□□ 1.78
CLN3-204ENST00000357857 SCAF11Q99590 1463 aaKnown RBP26.14■■□□□ 1.78
CLN3-204ENST00000357857 PLPPR3Q6T4P5 718 aa26.14■■□□□ 1.78
CLN3-204ENST00000357857 DDX10Q13206 875 aaKnown RBP26.14■■□□□ 1.77
CLN3-204ENST00000357857 C14orf93Q9H972 538 aaKnown RBP26.14■■□□□ 1.77
CLN3-204ENST00000357857 RIMS2Q9UQ26 1411 aa26.14■■□□□ 1.77
CLN3-204ENST00000357857 C11orf95C9JLR9 678 aaPredicted RBP26.12■■□□□ 1.77
CLN3-204ENST00000357857 CCDC7Q96M83 1385 aa26.12■■□□□ 1.77
CLN3-204ENST00000357857 MYO3AQ8NEV4 1616 aa26.11■■□□□ 1.77
CLN3-204ENST00000357857 ADGRB1O14514 1584 aa26.08■■□□□ 1.77
CLN3-204ENST00000357857 KIF7Q2M1P5 1343 aa26.07■■□□□ 1.76
CLN3-204ENST00000357857 EIF3AQ14152 1382 aaKnown RBP26.06■■□□□ 1.76
CLN3-204ENST00000357857 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.06■■□□□ 1.76
CLN3-204ENST00000357857 TMEM2Q9UHN6 1383 aa26.04■■□□□ 1.76
CLN3-204ENST00000357857 HDGFP51858 240 aaKnown RBP26.04■■□□□ 1.76
CLN3-204ENST00000357857 ALKQ9UM73 1620 aa26.02■■□□□ 1.76
CLN3-204ENST00000357857 SETD1BQ9UPS6 1966 aaKnown RBP26.01■■□□□ 1.76
CLN3-204ENST00000357857 TESK2Q96S53 571 aa26.01■■□□□ 1.75
CLN3-204ENST00000357857 CEP170BQ9Y4F5 1589 aaPredicted RBP26■■□□□ 1.75
CLN3-204ENST00000357857 ASXL1Q8IXJ9 1541 aa26■■□□□ 1.75
CLN3-204ENST00000357857 TMEM132EQ6IEE7 984 aa26■■□□□ 1.75
CLN3-204ENST00000357857 SETD1AO15047 1707 aaKnown RBP25.98■■□□□ 1.75
CLN3-204ENST00000357857 ZNF142P52746 1687 aaPredicted RBP25.98■■□□□ 1.75
CLN3-204ENST00000357857 NRXN3Q9Y4C0 1643 aa25.98■■□□□ 1.75
CLN3-204ENST00000357857 AEBP2Q6ZN18 517 aaPredicted RBP25.97■■□□□ 1.75
CLN3-204ENST00000357857 MIER1Q8N108 512 aa25.97■■□□□ 1.75
CLN3-204ENST00000357857 SENP3Q9H4L4 574 aaPredicted RBP25.97■■□□□ 1.75
CLN3-204ENST00000357857 SLIT1O75093 1534 aa25.97■■□□□ 1.75
CLN3-204ENST00000357857 PTPRMP28827 1452 aa25.97■■□□□ 1.75
CLN3-204ENST00000357857 ARHGAP23Q9P227 1491 aa25.96■■□□□ 1.75
CLN3-204ENST00000357857 ARHGEF28Q8N1W1 1705 aaKnown RBP25.96■■□□□ 1.75
CLN3-204ENST00000357857 POLR3GLQ9BT43 218 aa25.95■■□□□ 1.74
CLN3-204ENST00000357857 TMF1P82094 1093 aa25.94■■□□□ 1.74
CLN3-204ENST00000357857 THEMISQ8N1K5 641 aaPredicted RBP25.94■■□□□ 1.74
CLN3-204ENST00000357857 TRAK1Q9UPV9 953 aa25.94■■□□□ 1.74
CLN3-204ENST00000357857 DISP3Q9P2K9 1392 aa25.93■■□□□ 1.74
CLN3-204ENST00000357857 QRICH2Q9H0J4 1663 aa25.93■■□□□ 1.74
CLN3-204ENST00000357857 EID1Q9Y6B2 187 aa25.91■■□□□ 1.74
CLN3-204ENST00000357857 YTHDC2Q9H6S0 1430 aaKnown RBP25.9■■□□□ 1.74
CLN3-204ENST00000357857 CENPJQ9HC77 1338 aaPredicted RBP25.9■■□□□ 1.74
CLN3-204ENST00000357857 PLEKHG1Q9ULL1 1385 aa25.89■■□□□ 1.74
CLN3-204ENST00000357857 SLC24A1O60721 1099 aa25.89■■□□□ 1.74
CLN3-204ENST00000357857 LTKP29376 864 aa25.89■■□□□ 1.74
CLN3-204ENST00000357857 TXNDC2Q86VQ3 553 aa25.89■■□□□ 1.74
CLN3-204ENST00000357857 SBNO2Q9Y2G9 1366 aa25.88■■□□□ 1.73
CLN3-204ENST00000357857 KDM4FA0A1W2PPD8 638 aa25.88■■□□□ 1.73
CLN3-204ENST00000357857 BCANQ96GW7 911 aa25.85■■□□□ 1.73
CLN3-204ENST00000357857 STK26Q9P289 416 aa25.85■■□□□ 1.73
CLN3-204ENST00000357857 CDCA8Q53HL2 280 aa25.84■■□□□ 1.73
CLN3-204ENST00000357857 ANP32CO43423 234 aa25.83■■□□□ 1.72
CLN3-204ENST00000357857 LRPPRCP42704 1394 aaKnown RBP25.82■■□□□ 1.72
CLN3-204ENST00000357857 ADAMTS13Q76LX8 1427 aa25.82■■□□□ 1.72
CLN3-204ENST00000357857 DLC1Q96QB1 1528 aa25.81■■□□□ 1.72
CLN3-204ENST00000357857 METP08581 1390 aa25.8■■□□□ 1.72
CLN3-204ENST00000357857 KNDC1Q76NI1 1749 aa25.8■■□□□ 1.72
CLN3-204ENST00000357857 MED14O60244 1454 aa25.79■■□□□ 1.72
CLN3-204ENST00000357857 ABCC11Q96J66 1382 aa25.78■■□□□ 1.72
CLN3-204ENST00000357857 DIP2AQ14689 1571 aa25.77■■□□□ 1.72
CLN3-204ENST00000357857 MYOM1P52179 1685 aa25.75■■□□□ 1.71
CLN3-204ENST00000357857 PRAM1Q96QH2 718 aa25.74■■□□□ 1.71
CLN3-204ENST00000357857 POGKQ9P215 609 aa25.74■■□□□ 1.71
CLN3-204ENST00000357857 ANKLE2Q86XL3 938 aa25.73■■□□□ 1.71
CLN3-204ENST00000357857 TECPR2O15040 1411 aa25.73■■□□□ 1.71
CLN3-204ENST00000357857 CPS1P31327 1500 aa25.72■■□□□ 1.71
CLN3-204ENST00000357857 SAFB2Q14151 953 aaKnown RBP eCLIP25.71■■□□□ 1.71
CLN3-204ENST00000357857 SLC26A8Q96RN1 970 aa25.71■■□□□ 1.71
CLN3-204ENST00000357857 TBX22Q9Y458 520 aa25.71■■□□□ 1.71
CLN3-204ENST00000357857 TULP4Q9NRJ4 1543 aa25.71■■□□□ 1.71
CLN3-204ENST00000357857 EVC2Q86UK5 1308 aa25.7■■□□□ 1.7
CLN3-204ENST00000357857 SIRT1Q96EB6 747 aa25.68■■□□□ 1.7
CLN3-204ENST00000357857 FAM135BQ49AJ0 1406 aa25.67■■□□□ 1.7
CLN3-204ENST00000357857 PUS7Q96PZ0 661 aaKnown RBP25.66■■□□□ 1.7
CLN3-204ENST00000357857 PANK3Q9H999 370 aa25.66■■□□□ 1.7
CLN3-204ENST00000357857 MINK1Q8N4C8 1332 aaPredicted RBP25.65■■□□□ 1.7
CLN3-204ENST00000357857 PLEKHH1Q9ULM0 1364 aa25.65■■□□□ 1.7
CLN3-204ENST00000357857 WAPLQ7Z5K2 1190 aa25.65■■□□□ 1.7
CLN3-204ENST00000357857 PTPRUQ92729 1446 aa25.65■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms