RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 HMOX1P09601 288 aa18.7■□□□□ 0.58
COL17A1-201ENST00000353479 TTC5Q8N0Z6 440 aa18.7■□□□□ 0.58
COL17A1-201ENST00000353479 SLC52A1Q9NWF4 448 aa18.7■□□□□ 0.58
COL17A1-201ENST00000353479 EIF2S2P20042 333 aaKnown RBP18.69■□□□□ 0.58
COL17A1-201ENST00000353479 GPATCH3Q96I76 525 aa18.69■□□□□ 0.58
COL17A1-201ENST00000353479 NLRP6P59044 892 aa18.69■□□□□ 0.58
COL17A1-201ENST00000353479 CD109Q6YHK3 1445 aa18.69■□□□□ 0.58
COL17A1-201ENST00000353479 ZBED9Q6R2W3 1325 aa18.69■□□□□ 0.58
COL17A1-201ENST00000353479 WASHC2AQ641Q2 1341 aa18.69■□□□□ 0.58
COL17A1-201ENST00000353479 CNTLNQ9NXG0 1405 aa18.68■□□□□ 0.58
COL17A1-201ENST00000353479 TCERG1O14776 1098 aaKnown RBP18.68■□□□□ 0.58
COL17A1-201ENST00000353479 NGEFQ8N5V2 710 aa18.68■□□□□ 0.58
COL17A1-201ENST00000353479 PROSER2Q86WR7 435 aaPredicted RBP18.68■□□□□ 0.58
COL17A1-201ENST00000353479 PTMAP06454 111 aaKnown RBP18.67■□□□□ 0.58
COL17A1-201ENST00000353479 ESCO1Q5FWF5 840 aa18.67■□□□□ 0.58
COL17A1-201ENST00000353479 ZKSCAN2Q63HK3 967 aa18.67■□□□□ 0.58
COL17A1-201ENST00000353479 NECTIN2Q92692 538 aa18.67■□□□□ 0.58
COL17A1-201ENST00000353479 RUNDC1Q96C34 613 aa18.67■□□□□ 0.58
COL17A1-201ENST00000353479 NBPF8Q3BBV2 869 aa18.67■□□□□ 0.58
COL17A1-201ENST00000353479 SYTL4Q96C24 671 aaPredicted RBP18.66■□□□□ 0.58
COL17A1-201ENST00000353479 MEX3CQ5U5Q3 659 aaKnown RBP18.66■□□□□ 0.58
COL17A1-201ENST00000353479 MFAP1P55081 439 aaKnown RBP18.65■□□□□ 0.58
COL17A1-201ENST00000353479 CCDC141Q6ZP82 1450 aa18.65■□□□□ 0.58
COL17A1-201ENST00000353479 GOLGA6L4A6NEF3 574 aa18.65■□□□□ 0.58
COL17A1-201ENST00000353479 BIVM-ERCC5R4GMW8 1640 aa18.65■□□□□ 0.58
COL17A1-201ENST00000353479 ERBINQ96RT1 1412 aa18.65■□□□□ 0.58
COL17A1-201ENST00000353479 CAMSAP2Q08AD1 1489 aa18.64■□□□□ 0.57
COL17A1-201ENST00000353479 PLCB2Q00722 1185 aa18.64■□□□□ 0.57
COL17A1-201ENST00000353479 ABTB2Q8N961 1025 aa18.63■□□□□ 0.57
COL17A1-201ENST00000353479 NLRP2Q9NX02 1062 aa18.63■□□□□ 0.57
COL17A1-201ENST00000353479 RBM19Q9Y4C8 960 aaKnown RBP18.63■□□□□ 0.57
COL17A1-201ENST00000353479 POGZQ7Z3K3 1410 aa18.63■□□□□ 0.57
COL17A1-201ENST00000353479 RAPGEF4Q8WZA2 1011 aa18.63■□□□□ 0.57
COL17A1-201ENST00000353479 KIF14Q15058 1648 aa18.63■□□□□ 0.57
COL17A1-201ENST00000353479 MTHFSP49914 203 aa18.63■□□□□ 0.57
COL17A1-201ENST00000353479 SLC26A8Q96RN1 970 aa18.63■□□□□ 0.57
COL17A1-201ENST00000353479 GPRASP1Q5JY77 1395 aa18.62■□□□□ 0.57
COL17A1-201ENST00000353479 RRP1P56182 461 aaKnown RBP18.62■□□□□ 0.57
COL17A1-201ENST00000353479 COG6Q9Y2V7 657 aa18.62■□□□□ 0.57
COL17A1-201ENST00000353479 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.61■□□□□ 0.57
COL17A1-201ENST00000353479 CDK19Q9BWU1 502 aa18.61■□□□□ 0.57
COL17A1-201ENST00000353479 ADGRL1O94910 1474 aa18.6■□□□□ 0.57
COL17A1-201ENST00000353479 NAIPQ13075 1403 aa18.6■□□□□ 0.57
COL17A1-201ENST00000353479 ROCK1Q13464 1354 aa18.6■□□□□ 0.57
COL17A1-201ENST00000353479 SLC12A5Q9H2X9 1139 aa18.6■□□□□ 0.57
COL17A1-201ENST00000353479 G3V3G9 751 aa18.6■□□□□ 0.57
COL17A1-201ENST00000353479 DCAF8Q5TAQ9 597 aa18.6■□□□□ 0.57
COL17A1-201ENST00000353479 EXOC6Q8TAG9 804 aa18.6■□□□□ 0.57
COL17A1-201ENST00000353479 CRBNQ96SW2 442 aa18.6■□□□□ 0.57
COL17A1-201ENST00000353479 GNL2Q13823 731 aaKnown RBP18.59■□□□□ 0.57
COL17A1-201ENST00000353479 NEXNQ0ZGT2 675 aa18.59■□□□□ 0.57
COL17A1-201ENST00000353479 ANKLE2Q86XL3 938 aa18.59■□□□□ 0.57
COL17A1-201ENST00000353479 FRAT2O75474 233 aaPredicted RBP18.58■□□□□ 0.57
COL17A1-201ENST00000353479 TSPYL4Q9UJ04 414 aa18.58■□□□□ 0.57
COL17A1-201ENST00000353479 PTPN23Q9H3S7 1636 aa18.58■□□□□ 0.56
COL17A1-201ENST00000353479 MSH5O43196 834 aa18.58■□□□□ 0.56
COL17A1-201ENST00000353479 CABP1Q9NZU7 370 aa18.58■□□□□ 0.56
COL17A1-201ENST00000353479 ANKRD45Q5TZF3 282 aa18.57■□□□□ 0.56
COL17A1-201ENST00000353479 ABCC5O15440 1437 aa18.57■□□□□ 0.56
COL17A1-201ENST00000353479 RPGRIP1LQ68CZ1 1315 aa18.57■□□□□ 0.56
COL17A1-201ENST00000353479 C9orf78Q9NZ63 289 aaPredicted RBP18.56■□□□□ 0.56
COL17A1-201ENST00000353479 ADAMTS8Q9UP79 889 aa18.56■□□□□ 0.56
COL17A1-201ENST00000353479 GNAI1P63096 354 aa18.56■□□□□ 0.56
COL17A1-201ENST00000353479 PPP2R1AP30153 589 aa18.55■□□□□ 0.56
COL17A1-201ENST00000353479 FKBP5Q13451 457 aaPredicted RBP18.55■□□□□ 0.56
COL17A1-201ENST00000353479 ANKRD30BQ9BXX2 1392 aa18.54■□□□□ 0.56
COL17A1-201ENST00000353479 SLKQ9H2G2 1235 aaPredicted RBP18.54■□□□□ 0.56
COL17A1-201ENST00000353479 CENPQQ7L2Z9 268 aaPredicted RBP18.53■□□□□ 0.56
COL17A1-201ENST00000353479 BRD4O60885 1362 aaPredicted RBP18.53■□□□□ 0.56
COL17A1-201ENST00000353479 API5Q9BZZ5 524 aaKnown RBP18.53■□□□□ 0.56
COL17A1-201ENST00000353479 USP35Q9P2H5 1018 aa18.53■□□□□ 0.56
COL17A1-201ENST00000353479 DZIP1LQ8IYY4 767 aaKnown RBP18.53■□□□□ 0.56
COL17A1-201ENST00000353479 RTEL1-TNFRSF6BF6WH68 1400 aa18.52■□□□□ 0.56
COL17A1-201ENST00000353479 RILPL2Q969X0 211 aa18.52■□□□□ 0.55
COL17A1-201ENST00000353479 DDX19BQ9UMR2 479 aa18.52■□□□□ 0.55
COL17A1-201ENST00000353479 DDX58O95786 925 aaKnown RBP18.51■□□□□ 0.55
COL17A1-201ENST00000353479 HSP90B1P14625 803 aaKnown RBP18.51■□□□□ 0.55
COL17A1-201ENST00000353479 NOL8Q76FK4 1167 aaKnown RBP18.51■□□□□ 0.55
COL17A1-201ENST00000353479 TCP11L2Q8N4U5 519 aa18.5■□□□□ 0.55
COL17A1-201ENST00000353479 PRKAR2BP31323 418 aa18.49■□□□□ 0.55
COL17A1-201ENST00000353479 ZNF692Q9BU19 519 aaPredicted RBP18.49■□□□□ 0.55
COL17A1-201ENST00000353479 TOMM22Q9NS69 142 aa18.48■□□□□ 0.55
COL17A1-201ENST00000353479 DNTTIP2Q5QJE6 756 aaKnown RBP18.48■□□□□ 0.55
COL17A1-201ENST00000353479 FANCAO15360 1455 aa18.48■□□□□ 0.55
COL17A1-201ENST00000353479 MAP3K1Q13233 1512 aa18.48■□□□□ 0.55
COL17A1-201ENST00000353479 AKNAQ7Z591 1439 aa18.47■□□□□ 0.55
COL17A1-201ENST00000353479 STRN4Q9NRL3 753 aa18.47■□□□□ 0.55
COL17A1-201ENST00000353479 AIMP1Q12904 312 aaKnown RBP18.46■□□□□ 0.55
COL17A1-201ENST00000353479 KIF16BQ96L93 1317 aa18.46■□□□□ 0.55
COL17A1-201ENST00000353479 FBXO31Q5XUX0 539 aaPredicted RBP18.46■□□□□ 0.55
COL17A1-201ENST00000353479 FOXD4L1Q9NU39 408 aa18.45■□□□□ 0.54
COL17A1-201ENST00000353479 GAS2L2Q8NHY3 880 aa18.45■□□□□ 0.54
COL17A1-201ENST00000353479 THOC2Q8NI27 1593 aaKnown RBP18.45■□□□□ 0.54
COL17A1-201ENST00000353479 GBP4Q96PP9 640 aa18.44■□□□□ 0.54
COL17A1-201ENST00000353479 DENND4BO75064 1496 aaPredicted RBP18.44■□□□□ 0.54
COL17A1-201ENST00000353479 GOLGA6L6A8MZA4 724 aa18.44■□□□□ 0.54
COL17A1-201ENST00000353479 PLEKHO1Q53GL0 409 aaPredicted RBP18.43■□□□□ 0.54
COL17A1-201ENST00000353479 NCOA1Q15788 1441 aa18.43■□□□□ 0.54
COL17A1-201ENST00000353479 CEBPAP49715 358 aaPredicted RBP18.43■□□□□ 0.54
COL17A1-201ENST00000353479 RIC3Q7Z5B4 369 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms