RNA–Protein interactions for RNA: ENST00000350034.4

TRIM55-203, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,177 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-203ENST00000350034 UGGT1Q9NYU2 1555 aa9.59□□□□□ -0.87
TRIM55-203ENST00000350034 PIAS4Q8N2W9 510 aaPredicted RBP9.59□□□□□ -0.87
TRIM55-203ENST00000350034 PRKRIP1Q9H875 184 aaPredicted RBP9.59□□□□□ -0.87
TRIM55-203ENST00000350034 WASHC2CQ9Y4E1 1318 aa9.58□□□□□ -0.88
TRIM55-203ENST00000350034 CAMSAP1Q5T5Y3 1602 aa9.57□□□□□ -0.88
TRIM55-203ENST00000350034 PPP6R1Q9UPN7 881 aa9.57□□□□□ -0.88
TRIM55-203ENST00000350034 COL17A1Q9UMD9 1497 aaPredicted RBP9.57□□□□□ -0.88
TRIM55-203ENST00000350034 ZC3H13Q5T200 1668 aaKnown RBP9.57□□□□□ -0.88
TRIM55-203ENST00000350034 RPGRIP1LQ68CZ1 1315 aa9.56□□□□□ -0.88
TRIM55-203ENST00000350034 KIAA1210Q9ULL0 1709 aa9.56□□□□□ -0.88
TRIM55-203ENST00000350034 SCAF11Q99590 1463 aaKnown RBP9.56□□□□□ -0.88
TRIM55-203ENST00000350034 ADGRF5Q8IZF2 1346 aa9.56□□□□□ -0.88
TRIM55-203ENST00000350034 PTPRMP28827 1452 aa9.55□□□□□ -0.88
TRIM55-203ENST00000350034 IFFO2Q5TF58 517 aa9.55□□□□□ -0.88
TRIM55-203ENST00000350034 GTF3C3Q9Y5Q9 886 aa9.55□□□□□ -0.88
TRIM55-203ENST00000350034 IFT172Q9UG01 1749 aa9.55□□□□□ -0.88
TRIM55-203ENST00000350034 PIK3C2BO00750 1634 aa9.55□□□□□ -0.88
TRIM55-203ENST00000350034 IQGAP1P46940 1657 aa9.55□□□□□ -0.88
TRIM55-203ENST00000350034 SYNMO15061 1565 aa9.54□□□□□ -0.88
TRIM55-203ENST00000350034 MROH2AA6NES4 1674 aa9.54□□□□□ -0.88
TRIM55-203ENST00000350034 KIF1BO60333 1816 aa9.54□□□□□ -0.88
TRIM55-203ENST00000350034 SIGLEC1Q9BZZ2 1709 aa9.53□□□□□ -0.88
TRIM55-203ENST00000350034 KTN1Q86UP2 1357 aaKnown RBP9.52□□□□□ -0.88
TRIM55-203ENST00000350034 PIK3C2GO75747 1445 aa9.52□□□□□ -0.89
TRIM55-203ENST00000350034 ZFYVE9O95405 1425 aa9.52□□□□□ -0.89
TRIM55-203ENST00000350034 TMF1P82094 1093 aa9.52□□□□□ -0.89
TRIM55-203ENST00000350034 CCDC184Q52MB2 194 aa9.52□□□□□ -0.89
TRIM55-203ENST00000350034 CFAP70Q5T0N1 1121 aa9.52□□□□□ -0.89
TRIM55-203ENST00000350034 C14orf93Q9H972 538 aaKnown RBP9.52□□□□□ -0.89
TRIM55-203ENST00000350034 SLC52A1Q9NWF4 448 aa9.52□□□□□ -0.89
TRIM55-203ENST00000350034 ARHGEF40Q8TER5 1519 aa9.51□□□□□ -0.89
TRIM55-203ENST00000350034 SRCAPQ6ZRS2 3230 aa9.51□□□□□ -0.89
TRIM55-203ENST00000350034 SETBP1Q9Y6X0 1596 aa9.51□□□□□ -0.89
TRIM55-203ENST00000350034 PER1O15534 1290 aaPredicted RBP9.51□□□□□ -0.89
TRIM55-203ENST00000350034 IDI1Q13907 227 aa9.51□□□□□ -0.89
TRIM55-203ENST00000350034 EIF3AQ14152 1382 aaKnown RBP9.5□□□□□ -0.89
TRIM55-203ENST00000350034 POLR3GLQ9BT43 218 aa9.5□□□□□ -0.89
TRIM55-203ENST00000350034 ERVK-7P63135 1459 aa9.5□□□□□ -0.89
TRIM55-203ENST00000350034 PPLO60437 1756 aa9.5□□□□□ -0.89
TRIM55-203ENST00000350034 ADGRB1O14514 1584 aa9.5□□□□□ -0.89
TRIM55-203ENST00000350034 SBNO2Q9Y2G9 1366 aa9.5□□□□□ -0.89
TRIM55-203ENST00000350034 IQSEC2Q5JU85 1478 aa9.49□□□□□ -0.89
TRIM55-203ENST00000350034 SLC24A1O60721 1099 aa9.49□□□□□ -0.89
TRIM55-203ENST00000350034 RALBP1Q15311 655 aa9.49□□□□□ -0.89
TRIM55-203ENST00000350034 NEXMIFQ5QGS0 1516 aa9.49□□□□□ -0.89
TRIM55-203ENST00000350034 CHGAP10645 457 aaKnown RBP9.48□□□□□ -0.89
TRIM55-203ENST00000350034 CDCA8Q53HL2 280 aa9.48□□□□□ -0.89
TRIM55-203ENST00000350034 MRS2Q9HD23 443 aa9.48□□□□□ -0.89
TRIM55-203ENST00000350034 PREX1Q8TCU6 1659 aa9.48□□□□□ -0.89
TRIM55-203ENST00000350034 PARD3Q8TEW0 1356 aa9.48□□□□□ -0.89
TRIM55-203ENST00000350034 MYO3AQ8NEV4 1616 aa9.47□□□□□ -0.89
TRIM55-203ENST00000350034 VGFO15240 615 aaPredicted RBP9.47□□□□□ -0.89
TRIM55-203ENST00000350034 TMEM131LA2VDJ0 1609 aa9.46□□□□□ -0.89
TRIM55-203ENST00000350034 ADAMTSL3P82987 1691 aa9.46□□□□□ -0.89
TRIM55-203ENST00000350034 FBXO31Q5XUX0 539 aaPredicted RBP9.46□□□□□ -0.9
TRIM55-203ENST00000350034 MYBBP1AQ9BQG0 1328 aaKnown RBP9.46□□□□□ -0.9
TRIM55-203ENST00000350034 PANK3Q9H999 370 aa9.45□□□□□ -0.9
TRIM55-203ENST00000350034 BRD4O60885 1362 aaPredicted RBP9.45□□□□□ -0.9
TRIM55-203ENST00000350034 ADRA2BP18089 450 aa9.44□□□□□ -0.9
TRIM55-203ENST00000350034 PNISRQ8TF01 805 aaKnown RBP9.44□□□□□ -0.9
TRIM55-203ENST00000350034 LRPPRCP42704 1394 aaKnown RBP9.43□□□□□ -0.9
TRIM55-203ENST00000350034 NPC1L1Q9UHC9 1359 aa9.43□□□□□ -0.9
TRIM55-203ENST00000350034 CENPJQ9HC77 1338 aaPredicted RBP9.43□□□□□ -0.9
TRIM55-203ENST00000350034 HNRNPUQ00839 825 aaKnown RBP eCLIP9.43□□□□□ -0.9
TRIM55-203ENST00000350034 PUS7Q96PZ0 661 aaKnown RBP9.43□□□□□ -0.9
TRIM55-203ENST00000350034 A2ML1A8K2U0 1454 aa9.42□□□□□ -0.9
TRIM55-203ENST00000350034 ZMYM3Q14202 1370 aa9.42□□□□□ -0.9
TRIM55-203ENST00000350034 HSPA2P54652 639 aa9.42□□□□□ -0.9
TRIM55-203ENST00000350034 CFAP65Q6ZU64 1925 aaKnown RBP9.42□□□□□ -0.9
TRIM55-203ENST00000350034 CLTCQ00610 1675 aaKnown RBP9.42□□□□□ -0.9
TRIM55-203ENST00000350034 ASXL1Q8IXJ9 1541 aa9.41□□□□□ -0.9
TRIM55-203ENST00000350034 ZBED9Q6R2W3 1325 aa9.41□□□□□ -0.9
TRIM55-203ENST00000350034 AMER1Q5JTC6 1135 aaPredicted RBP9.41□□□□□ -0.9
TRIM55-203ENST00000350034 NLRP13Q86W25 1043 aa9.41□□□□□ -0.9
TRIM55-203ENST00000350034 FAM9BQ8IZU0 186 aa9.41□□□□□ -0.9
TRIM55-203ENST00000350034 LTBP4Q8N2S1 1624 aa9.41□□□□□ -0.9
TRIM55-203ENST00000350034 INSRP06213 1382 aa9.4□□□□□ -0.9
TRIM55-203ENST00000350034 MYOM1P52179 1685 aa9.4□□□□□ -0.9
TRIM55-203ENST00000350034 TMEM132EQ6IEE7 984 aa9.4□□□□□ -0.9
TRIM55-203ENST00000350034 TRAK1Q9UPV9 953 aa9.4□□□□□ -0.9
TRIM55-203ENST00000350034 MLECQ14165 292 aa9.39□□□□□ -0.91
TRIM55-203ENST00000350034 NUTM2DQ5VT03 806 aaPredicted RBP9.39□□□□□ -0.91
TRIM55-203ENST00000350034 TMC1Q8TDI8 760 aa9.39□□□□□ -0.91
TRIM55-203ENST00000350034 KDM5AP29375 1690 aaKnown RBP9.39□□□□□ -0.91
TRIM55-203ENST00000350034 KNSTRNQ9Y448 316 aa9.38□□□□□ -0.91
TRIM55-203ENST00000350034 RIMS2Q9UQ26 1411 aa9.38□□□□□ -0.91
TRIM55-203ENST00000350034 TNRQ92752 1358 aa9.37□□□□□ -0.91
TRIM55-203ENST00000350034 CC2D1BQ5T0F9 858 aaKnown RBP9.37□□□□□ -0.91
TRIM55-203ENST00000350034 CARD14Q9BXL6 1004 aa9.37□□□□□ -0.91
TRIM55-203ENST00000350034 MYO5BQ9ULV0 1848 aa9.37□□□□□ -0.91
TRIM55-203ENST00000350034 ALKQ9UM73 1620 aa9.37□□□□□ -0.91
TRIM55-203ENST00000350034 ARHGEF28Q8N1W1 1705 aaKnown RBP9.36□□□□□ -0.91
TRIM55-203ENST00000350034 CNGB1Q14028 1251 aaPredicted RBP9.36□□□□□ -0.91
TRIM55-203ENST00000350034 SUPT16HQ9Y5B9 1047 aaKnown RBP9.36□□□□□ -0.91
TRIM55-203ENST00000350034 YTHDC2Q9H6S0 1430 aaKnown RBP9.36□□□□□ -0.91
TRIM55-203ENST00000350034 TULP4Q9NRJ4 1543 aa9.36□□□□□ -0.91
TRIM55-203ENST00000350034 QRICH2Q9H0J4 1663 aa9.36□□□□□ -0.91
TRIM55-203ENST00000350034 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.35□□□□□ -0.91
TRIM55-203ENST00000350034 ESF1Q9H501 851 aaKnown RBP9.35□□□□□ -0.91
TRIM55-203ENST00000350034 STAG3Q9UJ98 1225 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms