RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 BCAR3O75815 825 aa14.36□□□□□ -0.11
SYNE1-202ENST00000347037 CCDC141Q6ZP82 1450 aa14.36□□□□□ -0.11
SYNE1-202ENST00000347037 INSRP06213 1382 aa14.36□□□□□ -0.11
SYNE1-202ENST00000347037 CANXP27824 592 aaKnown RBP14.36□□□□□ -0.11
SYNE1-202ENST00000347037 PLA2R1Q13018 1463 aa14.36□□□□□ -0.11
SYNE1-202ENST00000347037 APAF1O14727 1248 aa14.35□□□□□ -0.11
SYNE1-202ENST00000347037 SLFN5Q08AF3 891 aa14.35□□□□□ -0.11
SYNE1-202ENST00000347037 PRDM15P57071 1507 aaPredicted RBP14.34□□□□□ -0.11
SYNE1-202ENST00000347037 SPINK5Q9NQ38 1064 aaPredicted RBP14.34□□□□□ -0.11
SYNE1-202ENST00000347037 MAST1Q9Y2H9 1570 aa14.33□□□□□ -0.12
SYNE1-202ENST00000347037 ABCA9Q8IUA7 1624 aa14.33□□□□□ -0.12
SYNE1-202ENST00000347037 MAGI2Q86UL8 1455 aa14.33□□□□□ -0.12
SYNE1-202ENST00000347037 AMER1Q5JTC6 1135 aaPredicted RBP14.32□□□□□ -0.12
SYNE1-202ENST00000347037 SLKQ9H2G2 1235 aaPredicted RBP14.32□□□□□ -0.12
SYNE1-202ENST00000347037 RSPH4AQ5TD94 716 aa14.32□□□□□ -0.12
SYNE1-202ENST00000347037 ZNF521Q96K83 1311 aa14.31□□□□□ -0.12
SYNE1-202ENST00000347037 IGHDP01880 384 aa14.31□□□□□ -0.12
SYNE1-202ENST00000347037 ARAP3Q8WWN8 1544 aa14.31□□□□□ -0.12
SYNE1-202ENST00000347037 ARXQ96QS3 562 aa14.3□□□□□ -0.12
SYNE1-202ENST00000347037 CDCA8Q53HL2 280 aa14.29□□□□□ -0.12
SYNE1-202ENST00000347037 COG6Q9Y2V7 657 aa14.29□□□□□ -0.12
SYNE1-202ENST00000347037 SYCP2Q9BX26 1530 aa14.29□□□□□ -0.12
SYNE1-202ENST00000347037 WDR7Q9Y4E6 1490 aa14.29□□□□□ -0.12
SYNE1-202ENST00000347037 NEUROD2Q15784 382 aa14.28□□□□□ -0.12
SYNE1-202ENST00000347037 PANK1Q8TE04 598 aa14.28□□□□□ -0.12
SYNE1-202ENST00000347037 SEC24BO95487 1268 aa14.28□□□□□ -0.12
SYNE1-202ENST00000347037 EIF2AK4Q9P2K8 1649 aaKnown RBP14.28□□□□□ -0.12
SYNE1-202ENST00000347037 ARHGAP5Q13017 1502 aa14.27□□□□□ -0.12
SYNE1-202ENST00000347037 DMRT2Q9Y5R5 561 aa14.27□□□□□ -0.12
SYNE1-202ENST00000347037 NKTRP30414 1462 aaKnown RBP14.27□□□□□ -0.12
SYNE1-202ENST00000347037 POGKQ9P215 609 aa14.27□□□□□ -0.13
SYNE1-202ENST00000347037 E9PSI1 815 aa14.27□□□□□ -0.13
SYNE1-202ENST00000347037 BECN1Q14457 450 aa14.27□□□□□ -0.13
SYNE1-202ENST00000347037 ABCC1P33527 1531 aa14.27□□□□□ -0.13
SYNE1-202ENST00000347037 PLXNC1O60486 1568 aa14.26□□□□□ -0.13
SYNE1-202ENST00000347037 EIF3AQ14152 1382 aaKnown RBP14.26□□□□□ -0.13
SYNE1-202ENST00000347037 LAMC1P11047 1609 aa14.25□□□□□ -0.13
SYNE1-202ENST00000347037 CENPJQ9HC77 1338 aaPredicted RBP14.25□□□□□ -0.13
SYNE1-202ENST00000347037 CLUAP1Q96AJ1 413 aa14.25□□□□□ -0.13
SYNE1-202ENST00000347037 TRMT2AQ8IZ69 625 aaKnown RBP14.24□□□□□ -0.13
SYNE1-202ENST00000347037 RIMBP3CA6NJZ7 1639 aa14.24□□□□□ -0.13
SYNE1-202ENST00000347037 RIMBP3BA6NNM3 1639 aa14.24□□□□□ -0.13
SYNE1-202ENST00000347037 RIMBP3Q9UFD9 1639 aa14.24□□□□□ -0.13
SYNE1-202ENST00000347037 OSCARQ8IYS5 282 aa14.24□□□□□ -0.13
SYNE1-202ENST00000347037 CGNL1Q0VF96 1302 aa14.24□□□□□ -0.13
SYNE1-202ENST00000347037 ASXL1Q8IXJ9 1541 aa14.23□□□□□ -0.13
SYNE1-202ENST00000347037 TNNT2P45379 298 aaPredicted RBP14.23□□□□□ -0.13
SYNE1-202ENST00000347037 SPRYD3Q8NCJ5 442 aa14.23□□□□□ -0.13
SYNE1-202ENST00000347037 PLCH2O75038 1416 aa14.23□□□□□ -0.13
SYNE1-202ENST00000347037 USP19O94966 1318 aa14.23□□□□□ -0.13
SYNE1-202ENST00000347037 RRP7AQ9Y3A4 280 aaKnown RBP14.23□□□□□ -0.13
SYNE1-202ENST00000347037 UPF2Q9HAU5 1272 aaKnown RBP14.22□□□□□ -0.13
SYNE1-202ENST00000347037 MAPK8IP3Q9UPT6 1336 aa14.22□□□□□ -0.13
SYNE1-202ENST00000347037 UNC13BO14795 1591 aa14.22□□□□□ -0.13
SYNE1-202ENST00000347037 PIK3C2GO75747 1445 aa14.22□□□□□ -0.13
SYNE1-202ENST00000347037 BCL2L13Q9BXK5 485 aa14.21□□□□□ -0.13
SYNE1-202ENST00000347037 FAM43AQ8N2R8 423 aa14.2□□□□□ -0.14
SYNE1-202ENST00000347037 PDE3AQ14432 1141 aa14.2□□□□□ -0.14
SYNE1-202ENST00000347037 IQGAP3Q86VI3 1631 aa14.19□□□□□ -0.14
SYNE1-202ENST00000347037 SCAF11Q99590 1463 aaKnown RBP14.19□□□□□ -0.14
SYNE1-202ENST00000347037 WWC1Q8IX03 1113 aa14.18□□□□□ -0.14
SYNE1-202ENST00000347037 INO80Q9ULG1 1556 aaPredicted RBP14.18□□□□□ -0.14
SYNE1-202ENST00000347037 ASXL2Q76L83 1435 aa14.18□□□□□ -0.14
SYNE1-202ENST00000347037 TNNQ9UQP3 1299 aa14.18□□□□□ -0.14
SYNE1-202ENST00000347037 SYNMO15061 1565 aa14.17□□□□□ -0.14
SYNE1-202ENST00000347037 GZF1Q9H116 711 aaPredicted RBP14.17□□□□□ -0.14
SYNE1-202ENST00000347037 RNF17Q9BXT8 1623 aaKnown RBP14.16□□□□□ -0.14
SYNE1-202ENST00000347037 MAP3K4Q9Y6R4 1608 aa14.16□□□□□ -0.14
SYNE1-202ENST00000347037 CFAP70Q5T0N1 1121 aa14.16□□□□□ -0.14
SYNE1-202ENST00000347037 DUOX2Q9NRD8 1548 aa14.16□□□□□ -0.14
SYNE1-202ENST00000347037 PMFBP1Q8TBY8 1022 aa14.16□□□□□ -0.14
SYNE1-202ENST00000347037 CARD14Q9BXL6 1004 aa14.16□□□□□ -0.14
SYNE1-202ENST00000347037 RSPH6AQ9H0K4 717 aa14.16□□□□□ -0.14
SYNE1-202ENST00000347037 PDZRN3Q9UPQ7 1066 aa14.15□□□□□ -0.14
SYNE1-202ENST00000347037 PCDHB15Q9Y5E8 787 aa14.15□□□□□ -0.14
SYNE1-202ENST00000347037 ZFYVE16Q7Z3T8 1539 aa14.15□□□□□ -0.14
SYNE1-202ENST00000347037 DEPDC5O75140 1603 aa14.15□□□□□ -0.14
SYNE1-202ENST00000347037 L1TD1Q5T7N2 865 aaKnown RBP14.14□□□□□ -0.15
SYNE1-202ENST00000347037 ATP10AO60312 1499 aa14.14□□□□□ -0.15
SYNE1-202ENST00000347037 RLBP1P12271 317 aa14.14□□□□□ -0.15
SYNE1-202ENST00000347037 TBC1D2Q9BYX2 928 aa14.14□□□□□ -0.15
SYNE1-202ENST00000347037 MADDQ8WXG6 1647 aa14.14□□□□□ -0.15
SYNE1-202ENST00000347037 MORC1Q86VD1 984 aa14.13□□□□□ -0.15
SYNE1-202ENST00000347037 RARSP54136 660 aaKnown RBP14.13□□□□□ -0.15
SYNE1-202ENST00000347037 IQGAP1P46940 1657 aa14.12□□□□□ -0.15
SYNE1-202ENST00000347037 NPC1L1Q9UHC9 1359 aa14.12□□□□□ -0.15
SYNE1-202ENST00000347037 TCP11L2Q8N4U5 519 aa14.12□□□□□ -0.15
SYNE1-202ENST00000347037 PPRC1Q5VV67 1664 aaKnown RBP14.12□□□□□ -0.15
SYNE1-202ENST00000347037 NINLQ9Y2I6 1382 aa14.12□□□□□ -0.15
SYNE1-202ENST00000347037 EFCAB2Q5VUJ9 269 aa14.11□□□□□ -0.15
SYNE1-202ENST00000347037 TBC1D32Q96NH3 1257 aa14.11□□□□□ -0.15
SYNE1-202ENST00000347037 RRAGDQ9NQL2 400 aaPredicted RBP14.11□□□□□ -0.15
SYNE1-202ENST00000347037 KIDINS220Q9ULH0 1771 aa14.11□□□□□ -0.15
SYNE1-202ENST00000347037 NGEFQ8N5V2 710 aa14.11□□□□□ -0.15
SYNE1-202ENST00000347037 RWDD1Q9H446 243 aaPredicted RBP14.11□□□□□ -0.15
SYNE1-202ENST00000347037 TRAPPC8Q9Y2L5 1435 aa14.11□□□□□ -0.15
SYNE1-202ENST00000347037 SPAG9O60271 1321 aaKnown RBP14.11□□□□□ -0.15
SYNE1-202ENST00000347037 MFAP1P55081 439 aaKnown RBP14.1□□□□□ -0.15
SYNE1-202ENST00000347037 AFAP1Q8N556 730 aa14.1□□□□□ -0.15
SYNE1-202ENST00000347037 ANTXR1Q9H6X2 564 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms