RNA–Protein interactions for RNA: ENST00000337299.6

COL2A1-201, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL2A1, Length 4,257 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-201ENST00000337299 CCDC173Q0VFZ6 552 aa16.4■□□□□ 0.22
COL2A1-201ENST00000337299 TBC1D2Q9BYX2 928 aa16.39■□□□□ 0.21
COL2A1-201ENST00000337299 ELL2O00472 640 aaPredicted RBP16.39■□□□□ 0.21
COL2A1-201ENST00000337299 XPCQ01831 940 aaPredicted RBP16.39■□□□□ 0.21
COL2A1-201ENST00000337299 ZKSCAN2Q63HK3 967 aa16.39■□□□□ 0.21
COL2A1-201ENST00000337299 ZNF592Q92610 1267 aa16.38■□□□□ 0.21
COL2A1-201ENST00000337299 ZSCAN30Q86W11 494 aa16.37■□□□□ 0.21
COL2A1-201ENST00000337299 CHMP4BQ9H444 224 aaKnown RBP16.37■□□□□ 0.21
COL2A1-201ENST00000337299 MAPKBP1O60336 1514 aa16.37■□□□□ 0.21
COL2A1-201ENST00000337299 ST18O60284 1047 aa16.37■□□□□ 0.21
COL2A1-201ENST00000337299 MCCP23508 829 aa16.36■□□□□ 0.21
COL2A1-201ENST00000337299 KCNJ4P48050 445 aa16.36■□□□□ 0.21
COL2A1-201ENST00000337299 KANK1Q14678 1352 aa16.36■□□□□ 0.21
COL2A1-201ENST00000337299 MTERF4Q7Z6M4 381 aaKnown RBP16.35■□□□□ 0.21
COL2A1-201ENST00000337299 PRPF40AO75400 957 aaKnown RBP16.35■□□□□ 0.21
COL2A1-201ENST00000337299 SOX12O15370 315 aa16.35■□□□□ 0.21
COL2A1-201ENST00000337299 OSCARQ8IYS5 282 aa16.34■□□□□ 0.21
COL2A1-201ENST00000337299 DZIP1LQ8IYY4 767 aaKnown RBP16.34■□□□□ 0.21
COL2A1-201ENST00000337299 CBX1P83916 185 aa16.34■□□□□ 0.21
COL2A1-201ENST00000337299 SRPK2P78362 688 aaKnown RBP16.33■□□□□ 0.21
COL2A1-201ENST00000337299 RSPH4AQ5TD94 716 aa16.33■□□□□ 0.21
COL2A1-201ENST00000337299 AFAP1Q8N556 730 aa16.33■□□□□ 0.21
COL2A1-201ENST00000337299 CHMP3Q9Y3E7 222 aa16.33■□□□□ 0.21
COL2A1-201ENST00000337299 MYOM3Q5VTT5 1437 aa16.32■□□□□ 0.2
COL2A1-201ENST00000337299 CASKIN1Q8WXD9 1431 aa16.32■□□□□ 0.2
COL2A1-201ENST00000337299 GRIN2BQ13224 1484 aa16.32■□□□□ 0.2
COL2A1-201ENST00000337299 C8orf34Q49A92 452 aa16.32■□□□□ 0.2
COL2A1-201ENST00000337299 ERICH3Q5RHP9 1530 aa16.32■□□□□ 0.2
COL2A1-201ENST00000337299 CCDC39Q9UFE4 941 aa16.31■□□□□ 0.2
COL2A1-201ENST00000337299 NAP1L2Q9ULW6 460 aaPredicted RBP16.31■□□□□ 0.2
COL2A1-201ENST00000337299 NCOA2Q15596 1464 aa16.3■□□□□ 0.2
COL2A1-201ENST00000337299 GOLGA6L6A8MZA4 724 aa16.3■□□□□ 0.2
COL2A1-201ENST00000337299 TRIM6-TRIM34B2RNG4 842 aa16.3■□□□□ 0.2
COL2A1-201ENST00000337299 PHF14O94880 888 aa16.3■□□□□ 0.2
COL2A1-201ENST00000337299 UNC13AQ9UPW8 1703 aa16.29■□□□□ 0.2
COL2A1-201ENST00000337299 NRDCO43847 1150 aa16.28■□□□□ 0.2
COL2A1-201ENST00000337299 NBPF1Q3BBV0 1214 aa16.28■□□□□ 0.2
COL2A1-201ENST00000337299 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.28■□□□□ 0.2
COL2A1-201ENST00000337299 NUCB2P80303 420 aa16.28■□□□□ 0.2
COL2A1-201ENST00000337299 ISY1Q9ULR0 285 aaKnown RBP16.28■□□□□ 0.2
COL2A1-201ENST00000337299 FGD1P98174 961 aa16.28■□□□□ 0.2
COL2A1-201ENST00000337299 TRAK1Q9UPV9 953 aa16.28■□□□□ 0.2
COL2A1-201ENST00000337299 LMOD2Q6P5Q4 547 aa16.27■□□□□ 0.2
COL2A1-201ENST00000337299 SEC24BO95487 1268 aa16.27■□□□□ 0.2
COL2A1-201ENST00000337299 IGHDP01880 384 aa16.27■□□□□ 0.2
COL2A1-201ENST00000337299 PPP2R1AP30153 589 aa16.26■□□□□ 0.19
COL2A1-201ENST00000337299 DDX19BQ9UMR2 479 aa16.26■□□□□ 0.19
COL2A1-201ENST00000337299 NCOA1Q15788 1441 aa16.26■□□□□ 0.19
COL2A1-201ENST00000337299 HFM1A2PYH4 1435 aa16.25■□□□□ 0.19
COL2A1-201ENST00000337299 OS9Q13438 667 aaPredicted RBP16.25■□□□□ 0.19
COL2A1-201ENST00000337299 PRG4Q92954 1404 aaPredicted RBP16.25■□□□□ 0.19
COL2A1-201ENST00000337299 PDE3AQ14432 1141 aa16.25■□□□□ 0.19
COL2A1-201ENST00000337299 TNPO1Q92973 898 aaKnown RBP16.25■□□□□ 0.19
COL2A1-201ENST00000337299 CFAP44Q96MT7 982 aa16.25■□□□□ 0.19
COL2A1-201ENST00000337299 IFT57Q9NWB7 429 aa16.23■□□□□ 0.19
COL2A1-201ENST00000337299 NPHP1O15259 732 aa16.23■□□□□ 0.19
COL2A1-201ENST00000337299 MRC2Q9UBG0 1479 aa16.23■□□□□ 0.19
COL2A1-201ENST00000337299 EIF3AQ14152 1382 aaKnown RBP16.23■□□□□ 0.19
COL2A1-201ENST00000337299 NAIPQ13075 1403 aa16.22■□□□□ 0.19
COL2A1-201ENST00000337299 NUTM2FA1L443 756 aa16.22■□□□□ 0.19
COL2A1-201ENST00000337299 SLC4A10Q6U841 1118 aa16.22■□□□□ 0.19
COL2A1-201ENST00000337299 SPC24Q8NBT2 197 aa16.22■□□□□ 0.19
COL2A1-201ENST00000337299 BBXQ8WY36 941 aaPredicted RBP16.22■□□□□ 0.19
COL2A1-201ENST00000337299 SSFA2P28290 1259 aa16.21■□□□□ 0.19
COL2A1-201ENST00000337299 RILPL2Q969X0 211 aa16.21■□□□□ 0.19
COL2A1-201ENST00000337299 KIF16BQ96L93 1317 aa16.21■□□□□ 0.19
COL2A1-201ENST00000337299 C1orf115Q9H7X2 142 aa16.21■□□□□ 0.18
COL2A1-201ENST00000337299 CGNQ9P2M7 1197 aaKnown RBP16.21■□□□□ 0.18
COL2A1-201ENST00000337299 SYCE3A1L190 88 aa16.2■□□□□ 0.18
COL2A1-201ENST00000337299 IGSF3O75054 1194 aa16.2■□□□□ 0.18
COL2A1-201ENST00000337299 DIAPH3Q9NSV4 1193 aa16.2■□□□□ 0.18
COL2A1-201ENST00000337299 SPDYE4A6NLX3 237 aa16.2■□□□□ 0.18
COL2A1-201ENST00000337299 HMGN5P82970 282 aaKnown RBP16.2■□□□□ 0.18
COL2A1-201ENST00000337299 TCP11L2Q8N4U5 519 aa16.2■□□□□ 0.18
COL2A1-201ENST00000337299 CCDC144AA2RUR9 1427 aa16.2■□□□□ 0.18
COL2A1-201ENST00000337299 PEG3Q9GZU2 1588 aa16.2■□□□□ 0.18
COL2A1-201ENST00000337299 K7ELQ4 463 aaPredicted RBP16.19■□□□□ 0.18
COL2A1-201ENST00000337299 SNAPC4Q5SXM2 1469 aa16.19■□□□□ 0.18
COL2A1-201ENST00000337299 TIAM1Q13009 1591 aa16.19■□□□□ 0.18
COL2A1-201ENST00000337299 PDE4CQ08493 712 aa16.19■□□□□ 0.18
COL2A1-201ENST00000337299 SLFN5Q08AF3 891 aa16.19■□□□□ 0.18
COL2A1-201ENST00000337299 PRDM2Q13029 1718 aa16.18■□□□□ 0.18
COL2A1-201ENST00000337299 DUSP27Q5VZP5 1158 aa16.18■□□□□ 0.18
COL2A1-201ENST00000337299 TSR2Q969E8 191 aaKnown RBP16.18■□□□□ 0.18
COL2A1-201ENST00000337299 TBC1D32Q96NH3 1257 aa16.18■□□□□ 0.18
COL2A1-201ENST00000337299 TRERF1Q96PN7 1200 aa16.17■□□□□ 0.18
COL2A1-201ENST00000337299 ERICH4A6NGS2 130 aa16.17■□□□□ 0.18
COL2A1-201ENST00000337299 ABCA10Q8WWZ4 1543 aa16.17■□□□□ 0.18
COL2A1-201ENST00000337299 DNMBPQ6XZF7 1577 aa16.17■□□□□ 0.18
COL2A1-201ENST00000337299 ANKRD50Q9ULJ7 1429 aa16.17■□□□□ 0.18
COL2A1-201ENST00000337299 TSPY26PQ9H489 355 aa16.17■□□□□ 0.18
COL2A1-201ENST00000337299 A0A0G2JS52 829 aa16.16■□□□□ 0.18
COL2A1-201ENST00000337299 PDCL2Q8N4E4 241 aa16.16■□□□□ 0.18
COL2A1-201ENST00000337299 KIF3AQ9Y496 699 aa16.16■□□□□ 0.18
COL2A1-201ENST00000337299 FYCO1Q9BQS8 1478 aa16.16■□□□□ 0.18
COL2A1-201ENST00000337299 CCAR2Q8N163 923 aaKnown RBP16.16■□□□□ 0.18
COL2A1-201ENST00000337299 URB2Q14146 1524 aaKnown RBP16.15■□□□□ 0.18
COL2A1-201ENST00000337299 SASS6Q6UVJ0 657 aa16.15■□□□□ 0.18
COL2A1-201ENST00000337299 ANO2Q9NQ90 1003 aa16.15■□□□□ 0.18
COL2A1-201ENST00000337299 MAP3K1Q13233 1512 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms