RNA–Protein interactions for RNA: ENST00000330687.8

CMTM4-201, Transcript of CKLF like MARVEL transmembrane domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene CMTM4, Length 3,414 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM4-201ENST00000330687 RWDD1Q9H446 243 aaPredicted RBP25.91■■□□□ 1.74
CMTM4-201ENST00000330687 ANKRD30AQ9BXX3 1397 aa25.91■■□□□ 1.74
CMTM4-201ENST00000330687 GBP4Q96PP9 640 aa25.91■■□□□ 1.74
CMTM4-201ENST00000330687 XPCQ01831 940 aaPredicted RBP25.91■■□□□ 1.74
CMTM4-201ENST00000330687 DDX49Q9Y6V7 483 aaKnown RBP25.9■■□□□ 1.74
CMTM4-201ENST00000330687 KIF14Q15058 1648 aa25.88■■□□□ 1.73
CMTM4-201ENST00000330687 PDE3AQ14432 1141 aa25.88■■□□□ 1.73
CMTM4-201ENST00000330687 TESK2Q96S53 571 aa25.88■■□□□ 1.73
CMTM4-201ENST00000330687 HNRNPMP52272 730 aaKnown RBP eCLIP25.86■■□□□ 1.73
CMTM4-201ENST00000330687 HMGXB3Q12766 1538 aa25.86■■□□□ 1.73
CMTM4-201ENST00000330687 NKTRP30414 1462 aaKnown RBP25.85■■□□□ 1.73
CMTM4-201ENST00000330687 ZSCAN30Q86W11 494 aa25.85■■□□□ 1.73
CMTM4-201ENST00000330687 CTTNBP2Q8WZ74 1663 aa25.84■■□□□ 1.73
CMTM4-201ENST00000330687 MPNDQ8N594 471 aa25.84■■□□□ 1.73
CMTM4-201ENST00000330687 ARHGEF11O15085 1522 aa25.84■■□□□ 1.73
CMTM4-201ENST00000330687 ZNF521Q96K83 1311 aa25.83■■□□□ 1.73
CMTM4-201ENST00000330687 KIAA0586Q9BVV6 1533 aa25.83■■□□□ 1.73
CMTM4-201ENST00000330687 UQCRHLA0A096LP55 91 aa25.83■■□□□ 1.73
CMTM4-201ENST00000330687 UQCRHP07919 91 aa25.83■■□□□ 1.73
CMTM4-201ENST00000330687 TPRNQ4KMQ1 711 aa25.83■■□□□ 1.73
CMTM4-201ENST00000330687 PLEKHH2Q8IVE3 1493 aa25.83■■□□□ 1.72
CMTM4-201ENST00000330687 ABCA10Q8WWZ4 1543 aa25.83■■□□□ 1.72
CMTM4-201ENST00000330687 GOLGA6L22H0YM25 854 aa25.82■■□□□ 1.72
CMTM4-201ENST00000330687 PDZRN4Q6ZMN7 1036 aaPredicted RBP25.81■■□□□ 1.72
CMTM4-201ENST00000330687 RIPK4P57078 832 aa25.81■■□□□ 1.72
CMTM4-201ENST00000330687 DNTTIP2Q5QJE6 756 aaKnown RBP25.81■■□□□ 1.72
CMTM4-201ENST00000330687 PRG4Q92954 1404 aaPredicted RBP25.8■■□□□ 1.72
CMTM4-201ENST00000330687 ITPRIPQ8IWB1 547 aa25.79■■□□□ 1.72
CMTM4-201ENST00000330687 CAMSAP2Q08AD1 1489 aa25.79■■□□□ 1.72
CMTM4-201ENST00000330687 ERBINQ96RT1 1412 aa25.79■■□□□ 1.72
CMTM4-201ENST00000330687 CALD1Q05682 793 aaKnown RBP25.79■■□□□ 1.72
CMTM4-201ENST00000330687 SSFA2P28290 1259 aa25.78■■□□□ 1.72
CMTM4-201ENST00000330687 CCDC173Q0VFZ6 552 aa25.78■■□□□ 1.72
CMTM4-201ENST00000330687 UHRF1BP1Q6BDS2 1440 aa25.78■■□□□ 1.72
CMTM4-201ENST00000330687 AMER1Q5JTC6 1135 aaPredicted RBP25.78■■□□□ 1.72
CMTM4-201ENST00000330687 LNPKQ9C0E8 428 aa25.78■■□□□ 1.72
CMTM4-201ENST00000330687 CAVIN1Q6NZI2 390 aaKnown RBP25.77■■□□□ 1.72
CMTM4-201ENST00000330687 WWC1Q8IX03 1113 aa25.77■■□□□ 1.72
CMTM4-201ENST00000330687 CCDC144AA2RUR9 1427 aa25.77■■□□□ 1.72
CMTM4-201ENST00000330687 FOXD4L5Q5VV16 416 aaPredicted RBP25.76■■□□□ 1.71
CMTM4-201ENST00000330687 FOXD4L4Q8WXT5 416 aaPredicted RBP25.76■■□□□ 1.71
CMTM4-201ENST00000330687 TOPBP1Q92547 1522 aa25.76■■□□□ 1.71
CMTM4-201ENST00000330687 RARSP54136 660 aaKnown RBP25.76■■□□□ 1.71
CMTM4-201ENST00000330687 RBM42Q9BTD8 480 aaKnown RBP25.76■■□□□ 1.71
CMTM4-201ENST00000330687 NESP48681 1621 aa25.75■■□□□ 1.71
CMTM4-201ENST00000330687 GAPVD1Q14C86 1478 aa25.75■■□□□ 1.71
CMTM4-201ENST00000330687 OFD1O75665 1012 aa25.75■■□□□ 1.71
CMTM4-201ENST00000330687 NLRP1Q9C000 1473 aa25.74■■□□□ 1.71
CMTM4-201ENST00000330687 MCTP1Q6DN14 999 aa25.74■■□□□ 1.71
CMTM4-201ENST00000330687 PTMAP06454 111 aaKnown RBP25.73■■□□□ 1.71
CMTM4-201ENST00000330687 PRDM4Q9UKN5 801 aa25.73■■□□□ 1.71
CMTM4-201ENST00000330687 FBLN2P98095 1184 aa25.72■■□□□ 1.71
CMTM4-201ENST00000330687 RNF214Q8ND24 703 aa25.72■■□□□ 1.71
CMTM4-201ENST00000330687 PDS5BQ9NTI5 1447 aa25.71■■□□□ 1.71
CMTM4-201ENST00000330687 SKOR2Q2VWA4 1001 aaPredicted RBP25.71■■□□□ 1.71
CMTM4-201ENST00000330687 TRMT2AQ8IZ69 625 aaKnown RBP25.7■■□□□ 1.7
CMTM4-201ENST00000330687 SAMD9Q5K651 1589 aa25.7■■□□□ 1.7
CMTM4-201ENST00000330687 ISY1Q9ULR0 285 aaKnown RBP25.69■■□□□ 1.7
CMTM4-201ENST00000330687 TSC1Q92574 1164 aa25.69■■□□□ 1.7
CMTM4-201ENST00000330687 SMC4Q9NTJ3 1288 aa25.68■■□□□ 1.7
CMTM4-201ENST00000330687 JARID2Q92833 1246 aaPredicted RBP25.68■■□□□ 1.7
CMTM4-201ENST00000330687 PRDM2Q13029 1718 aa25.67■■□□□ 1.7
CMTM4-201ENST00000330687 CUL7Q14999 1698 aa25.67■■□□□ 1.7
CMTM4-201ENST00000330687 CD2BP2O95400 341 aaKnown RBP25.67■■□□□ 1.7
CMTM4-201ENST00000330687 TCP11L2Q8N4U5 519 aa25.67■■□□□ 1.7
CMTM4-201ENST00000330687 TSR2Q969E8 191 aaKnown RBP25.66■■□□□ 1.7
CMTM4-201ENST00000330687 DNMT1P26358 1616 aaKnown RBP25.66■■□□□ 1.7
CMTM4-201ENST00000330687 ZNF608Q9ULD9 1512 aaPredicted RBP25.66■■□□□ 1.7
CMTM4-201ENST00000330687 ZNF692Q9BU19 519 aaPredicted RBP25.66■■□□□ 1.7
CMTM4-201ENST00000330687 FAM177BA6PVY3 158 aa25.65■■□□□ 1.7
CMTM4-201ENST00000330687 DZIP1LQ8IYY4 767 aaKnown RBP25.65■■□□□ 1.7
CMTM4-201ENST00000330687 PRAG1Q86YV5 1406 aa25.64■■□□□ 1.7
CMTM4-201ENST00000330687 RBM27Q9P2N5 1060 aaKnown RBP25.64■■□□□ 1.69
CMTM4-201ENST00000330687 CC2D2AQ9P2K1 1620 aa25.63■■□□□ 1.69
CMTM4-201ENST00000330687 AAMPQ13685 434 aa25.63■■□□□ 1.69
CMTM4-201ENST00000330687 COL17A1Q9UMD9 1497 aaPredicted RBP25.62■■□□□ 1.69
CMTM4-201ENST00000330687 FOXD4L6Q3SYB3 417 aaPredicted RBP25.62■■□□□ 1.69
CMTM4-201ENST00000330687 FOXD4L3Q6VB84 417 aaPredicted RBP25.62■■□□□ 1.69
CMTM4-201ENST00000330687 MVPQ14764 893 aaKnown RBP25.62■■□□□ 1.69
CMTM4-201ENST00000330687 ZKSCAN2Q63HK3 967 aa25.62■■□□□ 1.69
CMTM4-201ENST00000330687 CHAMP1Q96JM3 812 aa25.62■■□□□ 1.69
CMTM4-201ENST00000330687 RAB3GAP1Q15042 981 aa25.61■■□□□ 1.69
CMTM4-201ENST00000330687 PLEKHD1A6NEE1 506 aa25.61■■□□□ 1.69
CMTM4-201ENST00000330687 CBX1P83916 185 aa25.6■■□□□ 1.69
CMTM4-201ENST00000330687 MAGI2Q86UL8 1455 aa25.6■■□□□ 1.69
CMTM4-201ENST00000330687 GAS2L2Q8NHY3 880 aa25.6■■□□□ 1.69
CMTM4-201ENST00000330687 SENP3Q9H4L4 574 aaPredicted RBP25.59■■□□□ 1.69
CMTM4-201ENST00000330687 KIF21AQ7Z4S6 1674 aa25.59■■□□□ 1.69
CMTM4-201ENST00000330687 CDCA8Q53HL2 280 aa25.59■■□□□ 1.69
CMTM4-201ENST00000330687 MAP7D2Q96T17 732 aa25.59■■□□□ 1.69
CMTM4-201ENST00000330687 IGSF3O75054 1194 aa25.58■■□□□ 1.69
CMTM4-201ENST00000330687 PRPF40AO75400 957 aaKnown RBP25.58■■□□□ 1.69
CMTM4-201ENST00000330687 ANKRD45Q5TZF3 282 aa25.58■■□□□ 1.69
CMTM4-201ENST00000330687 RBSNQ9H1K0 784 aa25.58■■□□□ 1.69
CMTM4-201ENST00000330687 MORC1Q86VD1 984 aa25.57■■□□□ 1.68
CMTM4-201ENST00000330687 DNMBPQ6XZF7 1577 aa25.57■■□□□ 1.68
CMTM4-201ENST00000330687 BAG4O95429 457 aaKnown RBP25.57■■□□□ 1.68
CMTM4-201ENST00000330687 PRIM1P49642 420 aaKnown RBP25.56■■□□□ 1.68
CMTM4-201ENST00000330687 PPP1R9BQ96SB3 815 aa25.56■■□□□ 1.68
CMTM4-201ENST00000330687 C9orf84Q5VXU9 1444 aa25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms