RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 PDCP20941 246 aa17.28■□□□□ 0.36
COL7A1-201ENST00000328333 MARCH6O60337 910 aa17.28■□□□□ 0.36
COL7A1-201ENST00000328333 ZKSCAN2Q63HK3 967 aa17.27■□□□□ 0.35
COL7A1-201ENST00000328333 PIP4K2AP48426 406 aaPredicted RBP17.26■□□□□ 0.35
COL7A1-201ENST00000328333 PDCL2Q8N4E4 241 aa17.26■□□□□ 0.35
COL7A1-201ENST00000328333 TCEAL9Q9UHQ7 104 aa17.25■□□□□ 0.35
COL7A1-201ENST00000328333 MCM2P49736 904 aa17.25■□□□□ 0.35
COL7A1-201ENST00000328333 NINLQ9Y2I6 1382 aa17.25■□□□□ 0.35
COL7A1-201ENST00000328333 LUC7LQ9NQ29 371 aaKnown RBP17.25■□□□□ 0.35
COL7A1-201ENST00000328333 PDIA4P13667 645 aaKnown RBP17.25■□□□□ 0.35
COL7A1-201ENST00000328333 ERLIN2O94905 339 aa17.25■□□□□ 0.35
COL7A1-201ENST00000328333 AMOTL1Q8IY63 956 aa17.25■□□□□ 0.35
COL7A1-201ENST00000328333 OLFM4Q6UX06 510 aa17.25■□□□□ 0.35
COL7A1-201ENST00000328333 LMOD2Q6P5Q4 547 aa17.25■□□□□ 0.35
COL7A1-201ENST00000328333 BICD2Q8TD16 824 aa17.24■□□□□ 0.35
COL7A1-201ENST00000328333 INTS3Q68E01 1043 aaKnown RBP17.24■□□□□ 0.35
COL7A1-201ENST00000328333 ERLIN1O75477 346 aa17.24■□□□□ 0.35
COL7A1-201ENST00000328333 MCTP1Q6DN14 999 aa17.24■□□□□ 0.35
COL7A1-201ENST00000328333 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-201ENST00000328333 STK11IPQ8N1F8 1099 aa17.24■□□□□ 0.35
COL7A1-201ENST00000328333 KCNH8Q96L42 1107 aa17.24■□□□□ 0.35
COL7A1-201ENST00000328333 CPLX1O14810 134 aa17.23■□□□□ 0.35
COL7A1-201ENST00000328333 RABEP1Q15276 862 aa17.23■□□□□ 0.35
COL7A1-201ENST00000328333 PCMTD1Q96MG8 357 aaPredicted RBP17.23■□□□□ 0.35
COL7A1-201ENST00000328333 SMARCE1Q969G3 411 aa17.22■□□□□ 0.35
COL7A1-201ENST00000328333 CARMIL2Q6F5E8 1435 aa17.22■□□□□ 0.35
COL7A1-201ENST00000328333 DYDC1Q8WWB3 177 aa17.22■□□□□ 0.35
COL7A1-201ENST00000328333 SAFBQ15424 915 aaKnown RBP eCLIP17.21■□□□□ 0.35
COL7A1-201ENST00000328333 ANKRD18AQ8IVF6 992 aa17.21■□□□□ 0.35
COL7A1-201ENST00000328333 CHMP3Q9Y3E7 222 aa17.21■□□□□ 0.35
COL7A1-201ENST00000328333 CT47A1Q5JQC4 288 aaPredicted RBP17.21■□□□□ 0.34
COL7A1-201ENST00000328333 ODF2Q5BJF6 829 aa17.2■□□□□ 0.34
COL7A1-201ENST00000328333 FAM107BQ9H098 131 aa17.2■□□□□ 0.34
COL7A1-201ENST00000328333 SENP3Q9H4L4 574 aaPredicted RBP17.19■□□□□ 0.34
COL7A1-201ENST00000328333 KIF2AO00139 706 aaPredicted RBP17.19■□□□□ 0.34
COL7A1-201ENST00000328333 EPS15P42566 896 aa17.19■□□□□ 0.34
COL7A1-201ENST00000328333 PODXL2Q9NZ53 605 aa17.19■□□□□ 0.34
COL7A1-201ENST00000328333 VPS53Q5VIR6 699 aa17.19■□□□□ 0.34
COL7A1-201ENST00000328333 CCDC144AA2RUR9 1427 aa17.18■□□□□ 0.34
COL7A1-201ENST00000328333 NOL8Q76FK4 1167 aaKnown RBP17.18■□□□□ 0.34
COL7A1-201ENST00000328333 NUP155O75694 1391 aa17.18■□□□□ 0.34
COL7A1-201ENST00000328333 BRMS1Q9HCU9 246 aa17.18■□□□□ 0.34
COL7A1-201ENST00000328333 TRDNQ13061 729 aa17.18■□□□□ 0.34
COL7A1-201ENST00000328333 PRDM2Q13029 1718 aa17.18■□□□□ 0.34
COL7A1-201ENST00000328333 RSPH4AQ5TD94 716 aa17.17■□□□□ 0.34
COL7A1-201ENST00000328333 FOXD4L1Q9NU39 408 aa17.17■□□□□ 0.34
COL7A1-201ENST00000328333 KINO60870 393 aaKnown RBP17.17■□□□□ 0.34
COL7A1-201ENST00000328333 PDE4CQ08493 712 aa17.17■□□□□ 0.34
COL7A1-201ENST00000328333 ANKRD45Q5TZF3 282 aa17.17■□□□□ 0.34
COL7A1-201ENST00000328333 SMC3Q9UQE7 1217 aa17.17■□□□□ 0.34
COL7A1-201ENST00000328333 SCAPERQ9BY12 1400 aa17.17■□□□□ 0.34
COL7A1-201ENST00000328333 PKD2Q13563 968 aa17.17■□□□□ 0.34
COL7A1-201ENST00000328333 ERC2O15083 957 aa17.16■□□□□ 0.34
COL7A1-201ENST00000328333 CARMIL1Q5VZK9 1371 aa17.16■□□□□ 0.34
COL7A1-201ENST00000328333 CT47B1P0C2W7 299 aaPredicted RBP17.16■□□□□ 0.34
COL7A1-201ENST00000328333 NAP1L1P55209 391 aaKnown RBP17.16■□□□□ 0.34
COL7A1-201ENST00000328333 HSP90AB4PQ58FF6 505 aa17.15■□□□□ 0.34
COL7A1-201ENST00000328333 EZRP15311 586 aaKnown RBP17.15■□□□□ 0.34
COL7A1-201ENST00000328333 PSMA5P28066 241 aa17.15■□□□□ 0.34
COL7A1-201ENST00000328333 NFKBIBQ15653 356 aa17.15■□□□□ 0.34
COL7A1-201ENST00000328333 CUX2O14529 1486 aa17.15■□□□□ 0.34
COL7A1-201ENST00000328333 AXDND1Q5T1B0 1012 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-201ENST00000328333 XBP1P17861 261 aa17.14■□□□□ 0.33
COL7A1-201ENST00000328333 DDX11Q96FC9 970 aa17.14■□□□□ 0.33
COL7A1-201ENST00000328333 C22orf23Q9BZE7 217 aa17.14■□□□□ 0.33
COL7A1-201ENST00000328333 RILPL2Q969X0 211 aa17.14■□□□□ 0.33
COL7A1-201ENST00000328333 TOMM22Q9NS69 142 aa17.13■□□□□ 0.33
COL7A1-201ENST00000328333 TSPY26PQ9H489 355 aa17.13■□□□□ 0.33
COL7A1-201ENST00000328333 ERCC6Q03468 1493 aa17.13■□□□□ 0.33
COL7A1-201ENST00000328333 MPHOSPH9Q99550 1183 aa17.13■□□□□ 0.33
COL7A1-201ENST00000328333 SLC4A10Q6U841 1118 aa17.12■□□□□ 0.33
COL7A1-201ENST00000328333 TRIM5Q9C035 493 aa17.12■□□□□ 0.33
COL7A1-201ENST00000328333 R3HCC1Q9Y3T6 440 aaKnown RBP17.12■□□□□ 0.33
COL7A1-201ENST00000328333 USP47Q96K76 1375 aa17.12■□□□□ 0.33
COL7A1-201ENST00000328333 NOL10Q9BSC4 688 aaKnown RBP17.12■□□□□ 0.33
COL7A1-201ENST00000328333 DHX16O60231 1041 aaKnown RBP17.12■□□□□ 0.33
COL7A1-201ENST00000328333 OFD1O75665 1012 aa17.12■□□□□ 0.33
COL7A1-201ENST00000328333 FOXD4L5Q5VV16 416 aaPredicted RBP17.12■□□□□ 0.33
COL7A1-201ENST00000328333 FOXD4L4Q8WXT5 416 aaPredicted RBP17.12■□□□□ 0.33
COL7A1-201ENST00000328333 JMYQ8N9B5 988 aa17.12■□□□□ 0.33
COL7A1-201ENST00000328333 MCM3P25205 808 aa17.11■□□□□ 0.33
COL7A1-201ENST00000328333 ERICH2A1L162 156 aa17.11■□□□□ 0.33
COL7A1-201ENST00000328333 CNTLNQ9NXG0 1405 aa17.11■□□□□ 0.33
COL7A1-201ENST00000328333 CCDC192P0DO97 292 aa17.11■□□□□ 0.33
COL7A1-201ENST00000328333 HSP90AB3PQ58FF7 597 aa17.11■□□□□ 0.33
COL7A1-201ENST00000328333 CCDC112Q8NEF3 446 aa17.1■□□□□ 0.33
COL7A1-201ENST00000328333 ANO2Q9NQ90 1003 aa17.1■□□□□ 0.33
COL7A1-201ENST00000328333 FILIP1LQ4L180 1135 aa17.1■□□□□ 0.33
COL7A1-201ENST00000328333 API5Q9BZZ5 524 aaKnown RBP17.1■□□□□ 0.33
COL7A1-201ENST00000328333 ZNHIT6Q9NWK9 470 aaKnown RBP17.1■□□□□ 0.33
COL7A1-201ENST00000328333 CCDC43Q96MW1 224 aaKnown RBP17.09■□□□□ 0.33
COL7A1-201ENST00000328333 NEFHP12036 1026 aa17.09■□□□□ 0.33
COL7A1-201ENST00000328333 HSP90AB2PQ58FF8 381 aa17.09■□□□□ 0.33
COL7A1-201ENST00000328333 CWC22Q9HCG8 908 aaKnown RBP17.09■□□□□ 0.33
COL7A1-201ENST00000328333 CLUAP1Q96AJ1 413 aa17.09■□□□□ 0.33
COL7A1-201ENST00000328333 ABCC8Q09428 1581 aa17.08■□□□□ 0.32
COL7A1-201ENST00000328333 HIP1O00291 1037 aa17.08■□□□□ 0.32
COL7A1-201ENST00000328333 SDF4Q9BRK5 362 aa17.07■□□□□ 0.32
COL7A1-201ENST00000328333 DZIP1LQ8IYY4 767 aaKnown RBP17.07■□□□□ 0.32
COL7A1-201ENST00000328333 VPS37CA5D8V6 355 aaPredicted RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms