RNA–Protein interactions for RNA: ENST00000324106.8

CD28-201, Transcript of CD28 molecule, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CD28, Length 4,812 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-201ENST00000324106 MARCH6O60337 910 aa11.12□□□□□ -0.63
CD28-201ENST00000324106 PTMSP20962 102 aa11.12□□□□□ -0.63
CD28-201ENST00000324106 RBM33Q96EV2 1170 aaKnown RBP11.12□□□□□ -0.63
CD28-201ENST00000324106 API5Q9BZZ5 524 aaKnown RBP11.12□□□□□ -0.63
CD28-201ENST00000324106 ZNF644Q9H582 1327 aaPredicted RBP11.12□□□□□ -0.63
CD28-201ENST00000324106 KLHL34Q8N239 644 aa11.12□□□□□ -0.63
CD28-201ENST00000324106 DMRT2Q9Y5R5 561 aa11.12□□□□□ -0.63
CD28-201ENST00000324106 SCAPERQ9BY12 1400 aa11.12□□□□□ -0.63
CD28-201ENST00000324106 KIAA2012Q0VF49 1180 aa11.12□□□□□ -0.63
CD28-201ENST00000324106 ABTB2Q8N961 1025 aa11.12□□□□□ -0.63
CD28-201ENST00000324106 HFM1A2PYH4 1435 aa11.11□□□□□ -0.63
CD28-201ENST00000324106 EIF2S2P20042 333 aaKnown RBP11.11□□□□□ -0.63
CD28-201ENST00000324106 CPLX2Q6PUV4 134 aaKnown RBP11.11□□□□□ -0.63
CD28-201ENST00000324106 SNAPC4Q5SXM2 1469 aa11.11□□□□□ -0.63
CD28-201ENST00000324106 RASSF8Q8NHQ8 419 aa11.11□□□□□ -0.63
CD28-201ENST00000324106 CLUAP1Q96AJ1 413 aa11.11□□□□□ -0.63
CD28-201ENST00000324106 ZNF692Q9BU19 519 aaPredicted RBP11.11□□□□□ -0.63
CD28-201ENST00000324106 TARBP1Q13395 1621 aaKnown RBP11.1□□□□□ -0.63
CD28-201ENST00000324106 ZKSCAN2Q63HK3 967 aa11.1□□□□□ -0.63
CD28-201ENST00000324106 TROQ12816 1431 aaPredicted RBP11.1□□□□□ -0.63
CD28-201ENST00000324106 ROCK1Q13464 1354 aa11.1□□□□□ -0.63
CD28-201ENST00000324106 GNAI1P63096 354 aa11.1□□□□□ -0.63
CD28-201ENST00000324106 SYNE3Q6ZMZ3 975 aa11.1□□□□□ -0.63
CD28-201ENST00000324106 AKAP17AQ02040 695 aaKnown RBP11.1□□□□□ -0.63
CD28-201ENST00000324106 PLEKHO1Q53GL0 409 aaPredicted RBP11.1□□□□□ -0.63
CD28-201ENST00000324106 RPGRIP1LQ68CZ1 1315 aa11.09□□□□□ -0.63
CD28-201ENST00000324106 HSP90AB4PQ58FF6 505 aa11.09□□□□□ -0.63
CD28-201ENST00000324106 ELL2O00472 640 aaPredicted RBP11.09□□□□□ -0.63
CD28-201ENST00000324106 CSPP1Q1MSJ5 1256 aa11.09□□□□□ -0.63
CD28-201ENST00000324106 SMG6Q86US8 1419 aaKnown RBP11.09□□□□□ -0.63
CD28-201ENST00000324106 GAS2L2Q8NHY3 880 aa11.09□□□□□ -0.63
CD28-201ENST00000324106 GLIPR1L2Q4G1C9 344 aa11.09□□□□□ -0.63
CD28-201ENST00000324106 RUFY2Q8WXA3 655 aa11.09□□□□□ -0.63
CD28-201ENST00000324106 POLA1P09884 1462 aaPredicted RBP11.08□□□□□ -0.64
CD28-201ENST00000324106 GBP4Q96PP9 640 aa11.08□□□□□ -0.64
CD28-201ENST00000324106 RRP7AQ9Y3A4 280 aaKnown RBP11.08□□□□□ -0.64
CD28-201ENST00000324106 RAPGEF3O95398 923 aa11.08□□□□□ -0.64
CD28-201ENST00000324106 TATP17735 454 aaPredicted RBP11.08□□□□□ -0.64
CD28-201ENST00000324106 EFCAB5A4FU69 1503 aa11.08□□□□□ -0.64
CD28-201ENST00000324106 NCOA2Q15596 1464 aa11.08□□□□□ -0.64
CD28-201ENST00000324106 KIAA0586Q9BVV6 1533 aa11.08□□□□□ -0.64
CD28-201ENST00000324106 TCERG1O14776 1098 aaKnown RBP11.07□□□□□ -0.64
CD28-201ENST00000324106 RIPK4P57078 832 aa11.07□□□□□ -0.64
CD28-201ENST00000324106 VPS53Q5VIR6 699 aa11.07□□□□□ -0.64
CD28-201ENST00000324106 SYAP1Q96A49 352 aaPredicted RBP11.07□□□□□ -0.64
CD28-201ENST00000324106 TSPYL4Q9UJ04 414 aa11.07□□□□□ -0.64
CD28-201ENST00000324106 TPM4P67936 248 aa11.07□□□□□ -0.64
CD28-201ENST00000324106 FKBP5Q13451 457 aaPredicted RBP11.07□□□□□ -0.64
CD28-201ENST00000324106 G3BP1Q13283 466 aaKnown RBP eCLIP11.07□□□□□ -0.64
CD28-201ENST00000324106 CWC22Q9HCG8 908 aaKnown RBP11.07□□□□□ -0.64
CD28-201ENST00000324106 KIF16BQ96L93 1317 aa11.07□□□□□ -0.64
CD28-201ENST00000324106 KIF21BO75037 1637 aa11.07□□□□□ -0.64
CD28-201ENST00000324106 PRDM11Q9NQV5 511 aa11.06□□□□□ -0.64
CD28-201ENST00000324106 ERICH3Q5RHP9 1530 aa11.06□□□□□ -0.64
CD28-201ENST00000324106 TMEM132EQ6IEE7 984 aa11.06□□□□□ -0.64
CD28-201ENST00000324106 TCEAL9Q9UHQ7 104 aa11.06□□□□□ -0.64
CD28-201ENST00000324106 USP35Q9P2H5 1018 aa11.06□□□□□ -0.64
CD28-201ENST00000324106 LRRC9Q6ZRR7 1453 aa11.06□□□□□ -0.64
CD28-201ENST00000324106 RUNDC1Q96C34 613 aa11.05□□□□□ -0.64
CD28-201ENST00000324106 ST18O60284 1047 aa11.05□□□□□ -0.64
CD28-201ENST00000324106 STRN4Q9NRL3 753 aa11.05□□□□□ -0.64
CD28-201ENST00000324106 RIC3Q7Z5B4 369 aa11.05□□□□□ -0.64
CD28-201ENST00000324106 BIVM-ERCC5R4GMW8 1640 aa11.05□□□□□ -0.64
CD28-201ENST00000324106 IFIT2P09913 472 aaKnown RBP11.05□□□□□ -0.64
CD28-201ENST00000324106 NCBP3Q53F19 620 aaKnown RBP11.05□□□□□ -0.64
CD28-201ENST00000324106 DIAPH3Q9NSV4 1193 aa11.05□□□□□ -0.64
CD28-201ENST00000324106 NUTM2BA6NNL0 878 aaPredicted RBP11.04□□□□□ -0.64
CD28-201ENST00000324106 NUTM2EB1AL46 878 aaPredicted RBP11.04□□□□□ -0.64
CD28-201ENST00000324106 NUTM2AQ8IVF1 878 aaPredicted RBP11.04□□□□□ -0.64
CD28-201ENST00000324106 CABP2Q9NPB3 220 aa11.04□□□□□ -0.64
CD28-201ENST00000324106 GGNBP2Q9H3C7 697 aa11.04□□□□□ -0.64
CD28-201ENST00000324106 CD109Q6YHK3 1445 aa11.04□□□□□ -0.64
CD28-201ENST00000324106 ANKRD30BQ9BXX2 1392 aa11.04□□□□□ -0.64
CD28-201ENST00000324106 NUTM2GQ5VZR2 741 aa11.04□□□□□ -0.64
CD28-201ENST00000324106 TOM1L2Q6ZVM7 507 aa11.04□□□□□ -0.64
CD28-201ENST00000324106 DDX19BQ9UMR2 479 aa11.04□□□□□ -0.64
CD28-201ENST00000324106 C9orf84Q5VXU9 1444 aa11.04□□□□□ -0.64
CD28-201ENST00000324106 TRDNQ13061 729 aa11.04□□□□□ -0.64
CD28-201ENST00000324106 CFAP70Q5T0N1 1121 aa11.04□□□□□ -0.64
CD28-201ENST00000324106 FBXW7Q969H0 707 aa11.04□□□□□ -0.64
CD28-201ENST00000324106 PRAM1Q96QH2 718 aa11.04□□□□□ -0.64
CD28-201ENST00000324106 APAF1O14727 1248 aa11.03□□□□□ -0.64
CD28-201ENST00000324106 PPP6R1Q9UPN7 881 aa11.03□□□□□ -0.64
CD28-201ENST00000324106 DRC7Q8IY82 874 aa11.03□□□□□ -0.64
CD28-201ENST00000324106 SF3A1Q15459 793 aaKnown RBP11.02□□□□□ -0.64
CD28-201ENST00000324106 ZKSCAN1P17029 563 aaPredicted RBP11.02□□□□□ -0.65
CD28-201ENST00000324106 SLC26A8Q96RN1 970 aa11.02□□□□□ -0.65
CD28-201ENST00000324106 PRKRIP1Q9H875 184 aaPredicted RBP11.02□□□□□ -0.65
CD28-201ENST00000324106 PIP4K2BP78356 416 aa11.02□□□□□ -0.65
CD28-201ENST00000324106 KIF6Q6ZMV9 814 aa11.02□□□□□ -0.65
CD28-201ENST00000324106 PNISRQ8TF01 805 aaKnown RBP11.02□□□□□ -0.65
CD28-201ENST00000324106 SPG7Q9UQ90 795 aa11.02□□□□□ -0.65
CD28-201ENST00000324106 APPP05067 770 aa11.01□□□□□ -0.65
CD28-201ENST00000324106 RILPL2Q969X0 211 aa11.01□□□□□ -0.65
CD28-201ENST00000324106 RNF20Q5VTR2 975 aa11□□□□□ -0.65
CD28-201ENST00000324106 MAGI1Q96QZ7 1491 aaPredicted RBP11□□□□□ -0.65
CD28-201ENST00000324106 MFAP1P55081 439 aaKnown RBP11□□□□□ -0.65
CD28-201ENST00000324106 RBM42Q9BTD8 480 aaKnown RBP11□□□□□ -0.65
CD28-201ENST00000324106 CLASP1Q7Z460 1538 aa11□□□□□ -0.65
CD28-201ENST00000324106 CEP89Q96ST8 783 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms