RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CNTLNQ9NXG0 1405 aa14.21□□□□□ -0.13
VPS39-201ENST00000318006 PLIN1O60240 522 aa14.21□□□□□ -0.13
VPS39-201ENST00000318006 MTERF4Q7Z6M4 381 aaKnown RBP14.21□□□□□ -0.14
VPS39-201ENST00000318006 EHBP1L1Q8N3D4 1523 aa14.2□□□□□ -0.14
VPS39-201ENST00000318006 APAF1O14727 1248 aa14.2□□□□□ -0.14
VPS39-201ENST00000318006 BRPF3Q9ULD4 1205 aa14.2□□□□□ -0.14
VPS39-201ENST00000318006 PRG4Q92954 1404 aaPredicted RBP14.2□□□□□ -0.14
VPS39-201ENST00000318006 WASHC2AQ641Q2 1341 aa14.2□□□□□ -0.14
VPS39-201ENST00000318006 HMMRO75330 724 aa14.2□□□□□ -0.14
VPS39-201ENST00000318006 GNL2Q13823 731 aaKnown RBP14.2□□□□□ -0.14
VPS39-201ENST00000318006 COG3Q96JB2 828 aa14.19□□□□□ -0.14
VPS39-201ENST00000318006 TIAM1Q13009 1591 aa14.19□□□□□ -0.14
VPS39-201ENST00000318006 MRE11P49959 708 aa14.19□□□□□ -0.14
VPS39-201ENST00000318006 NGEFQ8N5V2 710 aa14.19□□□□□ -0.14
VPS39-201ENST00000318006 URB2Q14146 1524 aaKnown RBP14.19□□□□□ -0.14
VPS39-201ENST00000318006 AFAP1Q8N556 730 aa14.18□□□□□ -0.14
VPS39-201ENST00000318006 SNAPC4Q5SXM2 1469 aa14.18□□□□□ -0.14
VPS39-201ENST00000318006 ARHGAP5Q13017 1502 aa14.18□□□□□ -0.14
VPS39-201ENST00000318006 TPM2P07951 284 aa14.17□□□□□ -0.14
VPS39-201ENST00000318006 HFM1A2PYH4 1435 aa14.17□□□□□ -0.14
VPS39-201ENST00000318006 SLC4A10Q6U841 1118 aa14.17□□□□□ -0.14
VPS39-201ENST00000318006 HDAC5Q9UQL6 1122 aa14.17□□□□□ -0.14
VPS39-201ENST00000318006 LTV1Q96GA3 475 aaPredicted RBP14.17□□□□□ -0.14
VPS39-201ENST00000318006 KIF16BQ96L93 1317 aa14.17□□□□□ -0.14
VPS39-201ENST00000318006 BCL2L13Q9BXK5 485 aa14.16□□□□□ -0.14
VPS39-201ENST00000318006 TROQ12816 1431 aaPredicted RBP14.16□□□□□ -0.14
VPS39-201ENST00000318006 FOXD4L5Q5VV16 416 aaPredicted RBP14.16□□□□□ -0.14
VPS39-201ENST00000318006 FOXD4L4Q8WXT5 416 aaPredicted RBP14.16□□□□□ -0.14
VPS39-201ENST00000318006 SETQ01105 290 aaPredicted RBP14.16□□□□□ -0.14
VPS39-201ENST00000318006 NOL8Q76FK4 1167 aaKnown RBP14.15□□□□□ -0.14
VPS39-201ENST00000318006 ZKSCAN2Q63HK3 967 aa14.15□□□□□ -0.14
VPS39-201ENST00000318006 TULP1O00294 542 aaPredicted RBP14.15□□□□□ -0.14
VPS39-201ENST00000318006 NOC3LQ8WTT2 800 aaKnown RBP14.15□□□□□ -0.14
VPS39-201ENST00000318006 FAM69CQ0P6D2 419 aa14.14□□□□□ -0.15
VPS39-201ENST00000318006 TRIM6-TRIM34B2RNG4 842 aa14.14□□□□□ -0.15
VPS39-201ENST00000318006 ATP6V1DQ9Y5K8 247 aa14.14□□□□□ -0.15
VPS39-201ENST00000318006 ELL2O00472 640 aaPredicted RBP14.13□□□□□ -0.15
VPS39-201ENST00000318006 C9orf84Q5VXU9 1444 aa14.13□□□□□ -0.15
VPS39-201ENST00000318006 DIAPH1O60610 1272 aaKnown RBP14.13□□□□□ -0.15
VPS39-201ENST00000318006 GPS2Q13227 327 aa14.13□□□□□ -0.15
VPS39-201ENST00000318006 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.13□□□□□ -0.15
VPS39-201ENST00000318006 CCDC34Q96HJ3 373 aa14.12□□□□□ -0.15
VPS39-201ENST00000318006 ZNF330Q9Y3S2 320 aaPredicted RBP14.12□□□□□ -0.15
VPS39-201ENST00000318006 KIAA1107Q9UPP5 1409 aa14.12□□□□□ -0.15
VPS39-201ENST00000318006 HECW1Q76N89 1606 aa14.12□□□□□ -0.15
VPS39-201ENST00000318006 R3HCC1Q9Y3T6 440 aaKnown RBP14.12□□□□□ -0.15
VPS39-201ENST00000318006 COG6Q9Y2V7 657 aa14.12□□□□□ -0.15
VPS39-201ENST00000318006 A0A0U1RQG5 324 aaPredicted RBP14.11□□□□□ -0.15
VPS39-201ENST00000318006 TEX35Q5T0J7 233 aa14.11□□□□□ -0.15
VPS39-201ENST00000318006 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.11□□□□□ -0.15
VPS39-201ENST00000318006 GOLGA6L19H0YKK7 550 aa14.11□□□□□ -0.15
VPS39-201ENST00000318006 BRD4O60885 1362 aaPredicted RBP14.11□□□□□ -0.15
VPS39-201ENST00000318006 RUNDC1Q96C34 613 aa14.1□□□□□ -0.15
VPS39-201ENST00000318006 TPM3P06753 285 aa14.1□□□□□ -0.15
VPS39-201ENST00000318006 NBPF8Q3BBV2 869 aa14.1□□□□□ -0.15
VPS39-201ENST00000318006 GPATCH3Q96I76 525 aa14.09□□□□□ -0.15
VPS39-201ENST00000318006 CUL7Q14999 1698 aa14.09□□□□□ -0.15
VPS39-201ENST00000318006 HSP90B1P14625 803 aaKnown RBP14.09□□□□□ -0.15
VPS39-201ENST00000318006 PLEKHH2Q8IVE3 1493 aa14.09□□□□□ -0.15
VPS39-201ENST00000318006 CFAP70Q5T0N1 1121 aa14.09□□□□□ -0.15
VPS39-201ENST00000318006 ZNF592Q92610 1267 aa14.09□□□□□ -0.15
VPS39-201ENST00000318006 NASPP49321 788 aaPredicted RBP14.08□□□□□ -0.15
VPS39-201ENST00000318006 KIAA0586Q9BVV6 1533 aa14.08□□□□□ -0.16
VPS39-201ENST00000318006 TMEM132EQ6IEE7 984 aa14.08□□□□□ -0.16
VPS39-201ENST00000318006 DAPK1P53355 1430 aa14.08□□□□□ -0.16
VPS39-201ENST00000318006 BECN2A8MW95 431 aa14.08□□□□□ -0.16
VPS39-201ENST00000318006 RIPK4P57078 832 aa14.08□□□□□ -0.16
VPS39-201ENST00000318006 NUCB2P80303 420 aa14.08□□□□□ -0.16
VPS39-201ENST00000318006 ANKRD45Q5TZF3 282 aa14.08□□□□□ -0.16
VPS39-201ENST00000318006 PCF11O94913 1555 aaKnown RBP14.08□□□□□ -0.16
VPS39-201ENST00000318006 FRAT2O75474 233 aaPredicted RBP14.07□□□□□ -0.16
VPS39-201ENST00000318006 NBPF1Q3BBV0 1214 aa14.07□□□□□ -0.16
VPS39-201ENST00000318006 DIAPH3Q9NSV4 1193 aa14.07□□□□□ -0.16
VPS39-201ENST00000318006 KIF3AQ9Y496 699 aa14.07□□□□□ -0.16
VPS39-201ENST00000318006 CCDC39Q9UFE4 941 aa14.07□□□□□ -0.16
VPS39-201ENST00000318006 RRP9O43818 475 aaKnown RBP14.06□□□□□ -0.16
VPS39-201ENST00000318006 TRAK2O60296 914 aa14.06□□□□□ -0.16
VPS39-201ENST00000318006 EPRSP07814 1512 aaKnown RBP14.06□□□□□ -0.16
VPS39-201ENST00000318006 SUPT6HQ7KZ85 1726 aaKnown RBP14.06□□□□□ -0.16
VPS39-201ENST00000318006 CHMP3Q9Y3E7 222 aa14.06□□□□□ -0.16
VPS39-201ENST00000318006 DDX19BQ9UMR2 479 aa14.06□□□□□ -0.16
VPS39-201ENST00000318006 PODXL2Q9NZ53 605 aa14.05□□□□□ -0.16
VPS39-201ENST00000318006 ZNF608Q9ULD9 1512 aaPredicted RBP14.05□□□□□ -0.16
VPS39-201ENST00000318006 CCAR2Q8N163 923 aaKnown RBP14.05□□□□□ -0.16
VPS39-201ENST00000318006 ADAMTS8Q9UP79 889 aa14.05□□□□□ -0.16
VPS39-201ENST00000318006 NAIPQ13075 1403 aa14.05□□□□□ -0.16
VPS39-201ENST00000318006 FOXD4L6Q3SYB3 417 aaPredicted RBP14.04□□□□□ -0.16
VPS39-201ENST00000318006 GORABQ5T7V8 394 aa14.04□□□□□ -0.16
VPS39-201ENST00000318006 FOXD4L3Q6VB84 417 aaPredicted RBP14.04□□□□□ -0.16
VPS39-201ENST00000318006 DZIP1LQ8IYY4 767 aaKnown RBP14.04□□□□□ -0.16
VPS39-201ENST00000318006 C22orf23Q9BZE7 217 aa14.04□□□□□ -0.16
VPS39-201ENST00000318006 GGNBP2Q9H3C7 697 aa14.04□□□□□ -0.16
VPS39-201ENST00000318006 CABP2Q9NPB3 220 aa14.04□□□□□ -0.16
VPS39-201ENST00000318006 IQGAP2Q13576 1575 aa14.04□□□□□ -0.16
VPS39-201ENST00000318006 SF3A1Q15459 793 aaKnown RBP14.04□□□□□ -0.16
VPS39-201ENST00000318006 CDK13Q14004 1512 aaKnown RBP14.04□□□□□ -0.16
VPS39-201ENST00000318006 REC8O95072 547 aa14.03□□□□□ -0.16
VPS39-201ENST00000318006 TEFQ10587 303 aa14.03□□□□□ -0.16
VPS39-201ENST00000318006 CCDC66A2RUB6 948 aa14.03□□□□□ -0.16
VPS39-201ENST00000318006 C1orf141Q5JVX7 400 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms