RNA–Protein interactions for RNA: ENST00000317516.11

TPM1-203, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 738 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-203ENST00000317516 RIMS2Q9UQ26 1411 aa26.8■■□□□ 1.88
TPM1-203ENST00000317516 PLEKHG1Q9ULL1 1385 aa26.78■■□□□ 1.88
TPM1-203ENST00000317516 ZFYVE9O95405 1425 aa26.77■■□□□ 1.88
TPM1-203ENST00000317516 PROSER2Q86WR7 435 aaPredicted RBP26.77■■□□□ 1.88
TPM1-203ENST00000317516 E9PCH4 1651 aa26.76■■□□□ 1.87
TPM1-203ENST00000317516 NAIPQ13075 1403 aa26.75■■□□□ 1.87
TPM1-203ENST00000317516 STRCP1A6NGW2 1772 aa26.75■■□□□ 1.87
TPM1-203ENST00000317516 SENP3Q9H4L4 574 aaPredicted RBP26.74■■□□□ 1.87
TPM1-203ENST00000317516 TBX22Q9Y458 520 aa26.74■■□□□ 1.87
TPM1-203ENST00000317516 TMEM131LA2VDJ0 1609 aa26.72■■□□□ 1.87
TPM1-203ENST00000317516 TRIM52Q96A61 297 aa26.72■■□□□ 1.87
TPM1-203ENST00000317516 TMEM94Q12767 1356 aa26.71■■□□□ 1.87
TPM1-203ENST00000317516 NUTM2DQ5VT03 806 aaPredicted RBP26.7■■□□□ 1.86
TPM1-203ENST00000317516 HFM1A2PYH4 1435 aa26.68■■□□□ 1.86
TPM1-203ENST00000317516 ZNF326Q5BKZ1 582 aaKnown RBP26.67■■□□□ 1.86
TPM1-203ENST00000317516 ALKQ9UM73 1620 aa26.65■■□□□ 1.86
TPM1-203ENST00000317516 NKTRP30414 1462 aaKnown RBP26.64■■□□□ 1.86
TPM1-203ENST00000317516 RBM33Q96EV2 1170 aaKnown RBP26.64■■□□□ 1.86
TPM1-203ENST00000317516 SLC4A1APQ9BWU0 796 aaKnown RBP26.63■■□□□ 1.85
TPM1-203ENST00000317516 PIK3R4Q99570 1358 aa26.61■■□□□ 1.85
TPM1-203ENST00000317516 MSH6P52701 1360 aa26.6■■□□□ 1.85
TPM1-203ENST00000317516 ILDR2Q71H61 639 aa26.6■■□□□ 1.85
TPM1-203ENST00000317516 MYO5BQ9ULV0 1848 aa26.59■■□□□ 1.85
TPM1-203ENST00000317516 FAM135BQ49AJ0 1406 aa26.58■■□□□ 1.85
TPM1-203ENST00000317516 ADAMTS13Q76LX8 1427 aa26.58■■□□□ 1.85
TPM1-203ENST00000317516 NWD1Q149M9 1564 aa26.58■■□□□ 1.85
TPM1-203ENST00000317516 C14orf37Q86TY3 774 aa26.56■■□□□ 1.84
TPM1-203ENST00000317516 NCOA3Q9Y6Q9 1424 aa26.56■■□□□ 1.84
TPM1-203ENST00000317516 SPHKAPQ2M3C7 1700 aa26.54■■□□□ 1.84
TPM1-203ENST00000317516 AMOTL2Q9Y2J4 779 aa26.54■■□□□ 1.84
TPM1-203ENST00000317516 DIP2AQ14689 1571 aa26.54■■□□□ 1.84
TPM1-203ENST00000317516 SLAIN2Q9P270 581 aa26.53■■□□□ 1.84
TPM1-203ENST00000317516 TRPM2O94759 1503 aa26.52■■□□□ 1.84
TPM1-203ENST00000317516 ACIN1Q9UKV3 1341 aaKnown RBP26.52■■□□□ 1.84
TPM1-203ENST00000317516 XIRP1Q702N8 1843 aaKnown RBP26.51■■□□□ 1.83
TPM1-203ENST00000317516 VGFO15240 615 aaPredicted RBP26.5■■□□□ 1.83
TPM1-203ENST00000317516 C19orf44Q9H6X5 657 aa26.5■■□□□ 1.83
TPM1-203ENST00000317516 CADPS2Q86UW7 1296 aa26.48■■□□□ 1.83
TPM1-203ENST00000317516 CHD2O14647 1828 aaKnown RBP26.48■■□□□ 1.83
TPM1-203ENST00000317516 RPGRIP1LQ68CZ1 1315 aa26.47■■□□□ 1.83
TPM1-203ENST00000317516 SOCS7O14512 581 aa26.47■■□□□ 1.83
TPM1-203ENST00000317516 ATF3P18847 181 aa26.47■■□□□ 1.83
TPM1-203ENST00000317516 PHF23Q9BUL5 403 aaPredicted RBP26.47■■□□□ 1.83
TPM1-203ENST00000317516 CLTCL1P53675 1640 aa26.45■■□□□ 1.82
TPM1-203ENST00000317516 MPHOSPH9Q99550 1183 aa26.44■■□□□ 1.82
TPM1-203ENST00000317516 MED1Q15648 1581 aaPredicted RBP26.43■■□□□ 1.82
TPM1-203ENST00000317516 SETBP1Q9Y6X0 1596 aa26.42■■□□□ 1.82
TPM1-203ENST00000317516 PTPRUQ92729 1446 aa26.42■■□□□ 1.82
TPM1-203ENST00000317516 FOXD1Q16676 465 aa26.42■■□□□ 1.82
TPM1-203ENST00000317516 METP08581 1390 aa26.4■■□□□ 1.82
TPM1-203ENST00000317516 NEXMIFQ5QGS0 1516 aa26.39■■□□□ 1.81
TPM1-203ENST00000317516 CCDC144AA2RUR9 1427 aa26.36■■□□□ 1.81
TPM1-203ENST00000317516 SETD5Q9C0A6 1442 aa26.36■■□□□ 1.81
TPM1-203ENST00000317516 ROBO1Q9Y6N7 1651 aa26.35■■□□□ 1.81
TPM1-203ENST00000317516 KIF1BO60333 1816 aa26.35■■□□□ 1.81
TPM1-203ENST00000317516 NRXN3Q9Y4C0 1643 aa26.33■■□□□ 1.81
TPM1-203ENST00000317516 RGL3Q3MIN7 710 aa26.32■■□□□ 1.8
TPM1-203ENST00000317516 DCCP43146 1447 aa26.31■■□□□ 1.8
TPM1-203ENST00000317516 JCADQ9P266 1359 aa26.28■■□□□ 1.8
TPM1-203ENST00000317516 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.26■■□□□ 1.79
TPM1-203ENST00000317516 XRN1Q8IZH2 1706 aaKnown RBP26.25■■□□□ 1.79
TPM1-203ENST00000317516 ANKRD30BQ9BXX2 1392 aa26.25■■□□□ 1.79
TPM1-203ENST00000317516 BRINP3Q76B58 766 aa26.25■■□□□ 1.79
TPM1-203ENST00000317516 RAB3GAP2Q9H2M9 1393 aa26.23■■□□□ 1.79
TPM1-203ENST00000317516 ADGRF5Q8IZF2 1346 aa26.22■■□□□ 1.79
TPM1-203ENST00000317516 SPATA31E1Q6ZUB1 1445 aa26.22■■□□□ 1.79
TPM1-203ENST00000317516 ADGRL3Q9HAR2 1447 aa26.22■■□□□ 1.79
TPM1-203ENST00000317516 PTCH1Q13635 1447 aa26.2■■□□□ 1.78
TPM1-203ENST00000317516 RGS17Q9UGC6 210 aaPredicted RBP26.19■■□□□ 1.78
TPM1-203ENST00000317516 PHLPP1O60346 1717 aa26.19■■□□□ 1.78
TPM1-203ENST00000317516 MST1RQ04912 1400 aa26.18■■□□□ 1.78
TPM1-203ENST00000317516 ROBO2Q9HCK4 1378 aa26.18■■□□□ 1.78
TPM1-203ENST00000317516 SPATA31A6Q5VVP1 1343 aa26.17■■□□□ 1.78
TPM1-203ENST00000317516 HRCP23327 699 aa26.17■■□□□ 1.78
TPM1-203ENST00000317516 PRAG1Q86YV5 1406 aa26.14■■□□□ 1.78
TPM1-203ENST00000317516 PPLO60437 1756 aa26.14■■□□□ 1.78
TPM1-203ENST00000317516 AHDC1Q5TGY3 1603 aaPredicted RBP26.14■■□□□ 1.77
TPM1-203ENST00000317516 LRRC59Q96AG4 307 aaKnown RBP26.13■■□□□ 1.77
TPM1-203ENST00000317516 STK26Q9P289 416 aa26.12■■□□□ 1.77
TPM1-203ENST00000317516 COL16A1Q07092 1604 aaPredicted RBP26.11■■□□□ 1.77
TPM1-203ENST00000317516 MEX3CQ5U5Q3 659 aaKnown RBP26.11■■□□□ 1.77
TPM1-203ENST00000317516 ASXL1Q8IXJ9 1541 aa26.1■■□□□ 1.77
TPM1-203ENST00000317516 TMEM132EQ6IEE7 984 aa26.09■■□□□ 1.77
TPM1-203ENST00000317516 LRPPRCP42704 1394 aaKnown RBP26.08■■□□□ 1.77
TPM1-203ENST00000317516 C1orf167Q5SNV9 1468 aa26.08■■□□□ 1.77
TPM1-203ENST00000317516 ABCC11Q96J66 1382 aa26.07■■□□□ 1.76
TPM1-203ENST00000317516 POTEAQ6S8J7 498 aa26.07■■□□□ 1.76
TPM1-203ENST00000317516 C14orf93Q9H972 538 aaKnown RBP26.07■■□□□ 1.76
TPM1-203ENST00000317516 SETD1AO15047 1707 aaKnown RBP26.07■■□□□ 1.76
TPM1-203ENST00000317516 PIK3C2GO75747 1445 aa26.06■■□□□ 1.76
TPM1-203ENST00000317516 WAPLQ7Z5K2 1190 aa26.04■■□□□ 1.76
TPM1-203ENST00000317516 ORAI2Q96SN7 254 aa26.04■■□□□ 1.76
TPM1-203ENST00000317516 NUTM2BA6NNL0 878 aaPredicted RBP26.03■■□□□ 1.76
TPM1-203ENST00000317516 NUTM2EB1AL46 878 aaPredicted RBP26.03■■□□□ 1.76
TPM1-203ENST00000317516 NUTM2AQ8IVF1 878 aaPredicted RBP26.03■■□□□ 1.76
TPM1-203ENST00000317516 DDX17Q92841 729 aaKnown RBP26.03■■□□□ 1.76
TPM1-203ENST00000317516 SIRT1Q96EB6 747 aa26.03■■□□□ 1.76
TPM1-203ENST00000317516 TECPR2O15040 1411 aa26.03■■□□□ 1.76
TPM1-203ENST00000317516 ZNF772Q68DY9 489 aaPredicted RBP26.02■■□□□ 1.76
TPM1-203ENST00000317516 NALCNQ8IZF0 1738 aa26.02■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms