RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 RNF17Q9BXT8 1623 aaKnown RBP17.56■□□□□ 0.4
SKA3-202ENST00000314759 FRAT1Q92837 279 aaPredicted RBP17.56■□□□□ 0.4
SKA3-202ENST00000314759 PLXNC1O60486 1568 aa17.55■□□□□ 0.4
SKA3-202ENST00000314759 C8orf34Q49A92 452 aa17.55■□□□□ 0.4
SKA3-202ENST00000314759 FAM161AQ3B820 660 aa17.54■□□□□ 0.4
SKA3-202ENST00000314759 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.54■□□□□ 0.43e-6■■□□□ 13.1
SKA3-202ENST00000314759 SLFN5Q08AF3 891 aa17.53■□□□□ 0.4
SKA3-202ENST00000314759 DUOX2Q9NRD8 1548 aa17.53■□□□□ 0.4
SKA3-202ENST00000314759 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.52■□□□□ 0.4
SKA3-202ENST00000314759 TRMT2AQ8IZ69 625 aaKnown RBP17.5■□□□□ 0.39
SKA3-202ENST00000314759 CCDC146Q8IYE0 955 aa17.49■□□□□ 0.39
SKA3-202ENST00000314759 SPINK5Q9NQ38 1064 aaPredicted RBP17.49■□□□□ 0.39
SKA3-202ENST00000314759 DAXXQ9UER7 740 aaPredicted RBP17.49■□□□□ 0.39
SKA3-202ENST00000314759 PIK3C2GO75747 1445 aa17.48■□□□□ 0.39
SKA3-202ENST00000314759 CDCA8Q53HL2 280 aa17.48■□□□□ 0.39
SKA3-202ENST00000314759 MADDQ8WXG6 1647 aa17.48■□□□□ 0.39
SKA3-202ENST00000314759 IQGAP1P46940 1657 aa17.48■□□□□ 0.39
SKA3-202ENST00000314759 CLASP1Q7Z460 1538 aa17.48■□□□□ 0.39
SKA3-202ENST00000314759 RGS3P49796 1198 aa17.48■□□□□ 0.39
SKA3-202ENST00000314759 ASXL1Q8IXJ9 1541 aa17.48■□□□□ 0.39
SKA3-202ENST00000314759 SYNMO15061 1565 aa17.47■□□□□ 0.39
SKA3-202ENST00000314759 SCAF11Q99590 1463 aaKnown RBP17.46■□□□□ 0.39
SKA3-202ENST00000314759 APAF1O14727 1248 aa17.46■□□□□ 0.39
SKA3-202ENST00000314759 BCAR3O75815 825 aa17.45■□□□□ 0.38
SKA3-202ENST00000314759 FRAT2O75474 233 aaPredicted RBP17.45■□□□□ 0.38
SKA3-202ENST00000314759 NPC1L1Q9UHC9 1359 aa17.45■□□□□ 0.38
SKA3-202ENST00000314759 EIF5BO60841 1220 aaKnown RBP17.44■□□□□ 0.38
SKA3-202ENST00000314759 NKTRP30414 1462 aaKnown RBP17.43■□□□□ 0.38
SKA3-202ENST00000314759 SCAPERQ9BY12 1400 aa17.43■□□□□ 0.38
SKA3-202ENST00000314759 EIF3AQ14152 1382 aaKnown RBP17.43■□□□□ 0.38
SKA3-202ENST00000314759 MYOM1P52179 1685 aa17.41■□□□□ 0.38
SKA3-202ENST00000314759 DMRT2Q9Y5R5 561 aa17.41■□□□□ 0.38
SKA3-202ENST00000314759 ABCC2Q92887 1545 aa17.41■□□□□ 0.38
SKA3-202ENST00000314759 IGHDP01880 384 aa17.41■□□□□ 0.38
SKA3-202ENST00000314759 E9PSI1 815 aa17.4■□□□□ 0.38
SKA3-202ENST00000314759 UBE2Q2Q8WVN8 375 aa17.4■□□□□ 0.38
SKA3-202ENST00000314759 STAC3Q96MF2 364 aa17.4■□□□□ 0.38
SKA3-202ENST00000314759 PLCH2O75038 1416 aa17.4■□□□□ 0.38
SKA3-202ENST00000314759 TRAPPC8Q9Y2L5 1435 aa17.4■□□□□ 0.38
SKA3-202ENST00000314759 SPHKAPQ2M3C7 1700 aa17.39■□□□□ 0.38
SKA3-202ENST00000314759 TRPM2O94759 1503 aa17.39■□□□□ 0.38
SKA3-202ENST00000314759 EFCAB2Q5VUJ9 269 aa17.39■□□□□ 0.37
SKA3-202ENST00000314759 PTPRTO14522 1441 aa17.38■□□□□ 0.37
SKA3-202ENST00000314759 CARD14Q9BXL6 1004 aa17.36■□□□□ 0.37
SKA3-202ENST00000314759 USP19O94966 1318 aa17.36■□□□□ 0.37
SKA3-202ENST00000314759 CLTCL1P53675 1640 aa17.36■□□□□ 0.37
SKA3-202ENST00000314759 CEP152O94986 1710 aa17.36■□□□□ 0.37
SKA3-202ENST00000314759 ABCC1P33527 1531 aa17.35■□□□□ 0.37
SKA3-202ENST00000314759 PDE3AQ14432 1141 aa17.34■□□□□ 0.37
SKA3-202ENST00000314759 CHD1O14646 1710 aa17.34■□□□□ 0.37
SKA3-202ENST00000314759 CGNL1Q0VF96 1302 aa17.34■□□□□ 0.37
SKA3-202ENST00000314759 SHROOM2Q13796 1616 aa17.34■□□□□ 0.37
SKA3-202ENST00000314759 SPAG9O60271 1321 aaKnown RBP17.34■□□□□ 0.37
SKA3-202ENST00000314759 AFAP1Q8N556 730 aa17.34■□□□□ 0.37
SKA3-202ENST00000314759 KDM5AP29375 1690 aaKnown RBP17.33■□□□□ 0.37
SKA3-202ENST00000314759 NGEFQ8N5V2 710 aa17.33■□□□□ 0.37
SKA3-202ENST00000314759 ERCC6L2Q5T890 1561 aa17.33■□□□□ 0.36
SKA3-202ENST00000314759 CFAP70Q5T0N1 1121 aa17.33■□□□□ 0.36
SKA3-202ENST00000314759 SEC24BO95487 1268 aa17.32■□□□□ 0.36
SKA3-202ENST00000314759 WWC1Q8IX03 1113 aa17.32■□□□□ 0.36
SKA3-202ENST00000314759 PANK1Q8TE04 598 aa17.32■□□□□ 0.36
SKA3-202ENST00000314759 CLUAP1Q96AJ1 413 aa17.32■□□□□ 0.36
SKA3-202ENST00000314759 ERVK-7P63135 1459 aa17.32■□□□□ 0.36
SKA3-202ENST00000314759 CENPJQ9HC77 1338 aaPredicted RBP17.32■□□□□ 0.36
SKA3-202ENST00000314759 COG6Q9Y2V7 657 aa17.32■□□□□ 0.36
SKA3-202ENST00000314759 FAM43AQ8N2R8 423 aa17.29■□□□□ 0.36
SKA3-202ENST00000314759 MAPK8IP3Q9UPT6 1336 aa17.29■□□□□ 0.36
SKA3-202ENST00000314759 RTEL1-TNFRSF6BF6WH68 1400 aa17.29■□□□□ 0.36
SKA3-202ENST00000314759 CANXP27824 592 aaKnown RBP17.29■□□□□ 0.36
SKA3-202ENST00000314759 KIAA1210Q9ULL0 1709 aa17.29■□□□□ 0.36
SKA3-202ENST00000314759 SLC24A1O60721 1099 aa17.28■□□□□ 0.36
SKA3-202ENST00000314759 POGKQ9P215 609 aa17.28■□□□□ 0.36
SKA3-202ENST00000314759 ADGRF5Q8IZF2 1346 aa17.28■□□□□ 0.36
SKA3-202ENST00000314759 NINLQ9Y2I6 1382 aa17.28■□□□□ 0.36
SKA3-202ENST00000314759 VIRMAQ69YN4 1812 aaKnown RBP17.28■□□□□ 0.36
SKA3-202ENST00000314759 POLR3AO14802 1390 aaPredicted RBP17.28■□□□□ 0.36
SKA3-202ENST00000314759 ZFYVE16Q7Z3T8 1539 aa17.27■□□□□ 0.36
SKA3-202ENST00000314759 TET3O43151 1660 aa17.26■□□□□ 0.35
SKA3-202ENST00000314759 DEPDC5O75140 1603 aa17.26■□□□□ 0.35
SKA3-202ENST00000314759 NEUROD2Q15784 382 aa17.25■□□□□ 0.35
SKA3-202ENST00000314759 ZCCHC11Q5TAX3 1644 aaKnown RBP17.25■□□□□ 0.35
SKA3-202ENST00000314759 RARSP54136 660 aaKnown RBP17.24■□□□□ 0.35
SKA3-202ENST00000314759 RSPH6AQ9H0K4 717 aa17.24■□□□□ 0.35
SKA3-202ENST00000314759 RRP7AQ9Y3A4 280 aaKnown RBP17.24■□□□□ 0.35
SKA3-202ENST00000314759 KANK1Q14678 1352 aa17.24■□□□□ 0.35
SKA3-202ENST00000314759 NLRP1Q9C000 1473 aa17.24■□□□□ 0.35
SKA3-202ENST00000314759 ABCA6Q8N139 1617 aa17.24■□□□□ 0.35
SKA3-202ENST00000314759 MAP3K4Q9Y6R4 1608 aa17.24■□□□□ 0.35
SKA3-202ENST00000314759 KIF3BO15066 747 aa17.23■□□□□ 0.35
SKA3-202ENST00000314759 UGGT1Q9NYU2 1555 aa17.23■□□□□ 0.35
SKA3-202ENST00000314759 MYOM2P54296 1465 aa17.23■□□□□ 0.35
SKA3-202ENST00000314759 RLBP1P12271 317 aa17.23■□□□□ 0.35
SKA3-202ENST00000314759 PCDHB15Q9Y5E8 787 aa17.23■□□□□ 0.35
SKA3-202ENST00000314759 VWDEQ8N2E2 1590 aa17.22■□□□□ 0.35
SKA3-202ENST00000314759 BECN1Q14457 450 aa17.22■□□□□ 0.35
SKA3-202ENST00000314759 TNNQ9UQP3 1299 aa17.22■□□□□ 0.35
SKA3-202ENST00000314759 NEURL4Q96JN8 1562 aa17.22■□□□□ 0.35
SKA3-202ENST00000314759 TNNT2P45379 298 aaPredicted RBP17.22■□□□□ 0.35
SKA3-202ENST00000314759 MORC1Q86VD1 984 aa17.21■□□□□ 0.35
SKA3-202ENST00000314759 TCP11L2Q8N4U5 519 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms