RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 FAM135AQ9P2D6 1515 aa10.3□□□□□ -0.76
VPS41-202ENST00000310301 ARAP1Q96P48 1450 aa10.3□□□□□ -0.76
VPS41-202ENST00000310301 PBRM1Q86U86 1689 aa10.29□□□□□ -0.76
VPS41-202ENST00000310301 TCERG1O14776 1098 aaKnown RBP10.29□□□□□ -0.76
VPS41-202ENST00000310301 CC2D1BQ5T0F9 858 aaKnown RBP10.29□□□□□ -0.76
VPS41-202ENST00000310301 SIN3AQ96ST3 1273 aa10.29□□□□□ -0.76
VPS41-202ENST00000310301 NUTM2BA6NNL0 878 aaPredicted RBP10.29□□□□□ -0.76
VPS41-202ENST00000310301 NUTM2EB1AL46 878 aaPredicted RBP10.29□□□□□ -0.76
VPS41-202ENST00000310301 NUTM2AQ8IVF1 878 aaPredicted RBP10.29□□□□□ -0.76
VPS41-202ENST00000310301 ABCC10Q5T3U5 1492 aa10.29□□□□□ -0.76
VPS41-202ENST00000310301 DHX29Q7Z478 1369 aaKnown RBP10.29□□□□□ -0.76
VPS41-202ENST00000310301 RAB3GAP2Q9H2M9 1393 aa10.29□□□□□ -0.76
VPS41-202ENST00000310301 MCCP23508 829 aa10.29□□□□□ -0.76
VPS41-202ENST00000310301 RAPGEF6Q8TEU7 1601 aa10.28□□□□□ -0.76
VPS41-202ENST00000310301 HFM1A2PYH4 1435 aa10.28□□□□□ -0.76
VPS41-202ENST00000310301 U2SURPO15042 1029 aaKnown RBP10.28□□□□□ -0.76
VPS41-202ENST00000310301 SLC26A8Q96RN1 970 aa10.28□□□□□ -0.76
VPS41-202ENST00000310301 NEO1Q92859 1461 aa10.28□□□□□ -0.76
VPS41-202ENST00000310301 MINK1Q8N4C8 1332 aaPredicted RBP10.28□□□□□ -0.76
VPS41-202ENST00000310301 CADPS2Q86UW7 1296 aa10.28□□□□□ -0.76
VPS41-202ENST00000310301 OS9Q13438 667 aaPredicted RBP10.28□□□□□ -0.76
VPS41-202ENST00000310301 KIAA0556O60303 1618 aa10.27□□□□□ -0.76
VPS41-202ENST00000310301 COG3Q96JB2 828 aa10.27□□□□□ -0.76
VPS41-202ENST00000310301 SUPT6HQ7KZ85 1726 aaKnown RBP10.26□□□□□ -0.77
VPS41-202ENST00000310301 TARBP1Q13395 1621 aaKnown RBP10.26□□□□□ -0.77
VPS41-202ENST00000310301 ABCA5Q8WWZ7 1642 aa10.26□□□□□ -0.77
VPS41-202ENST00000310301 LRPPRCP42704 1394 aaKnown RBP10.26□□□□□ -0.77
VPS41-202ENST00000310301 MSH6P52701 1360 aa10.26□□□□□ -0.77
VPS41-202ENST00000310301 SYAP1Q96A49 352 aaPredicted RBP10.25□□□□□ -0.77
VPS41-202ENST00000310301 GOLGA6L1Q8N7Z2 621 aa10.25□□□□□ -0.77
VPS41-202ENST00000310301 UHRF1BP1LA0JNW5 1464 aa10.25□□□□□ -0.77
VPS41-202ENST00000310301 ATP10AO60312 1499 aa10.24□□□□□ -0.77
VPS41-202ENST00000310301 MSH5O43196 834 aa10.24□□□□□ -0.77
VPS41-202ENST00000310301 ANKRD30BQ9BXX2 1392 aa10.24□□□□□ -0.77
VPS41-202ENST00000310301 CFAP44Q96MT7 982 aa10.23□□□□□ -0.77
VPS41-202ENST00000310301 KIAA1107Q9UPP5 1409 aa10.23□□□□□ -0.77
VPS41-202ENST00000310301 USP35Q9P2H5 1018 aa10.23□□□□□ -0.77
VPS41-202ENST00000310301 A2MP01023 1474 aa10.23□□□□□ -0.77
VPS41-202ENST00000310301 HSPA2P54652 639 aa10.23□□□□□ -0.77
VPS41-202ENST00000310301 NOC3LQ8WTT2 800 aaKnown RBP10.23□□□□□ -0.77
VPS41-202ENST00000310301 CENPJQ9HC77 1338 aaPredicted RBP10.23□□□□□ -0.77
VPS41-202ENST00000310301 LMTK3Q96Q04 1460 aa10.23□□□□□ -0.77
VPS41-202ENST00000310301 GSE1Q14687 1217 aa10.22□□□□□ -0.77
VPS41-202ENST00000310301 CALD1Q05682 793 aaKnown RBP10.22□□□□□ -0.77
VPS41-202ENST00000310301 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.22□□□□□ -0.77
VPS41-202ENST00000310301 RCAN3Q9UKA8 241 aa10.21□□□□□ -0.77
VPS41-202ENST00000310301 WASHC2AQ641Q2 1341 aa10.21□□□□□ -0.77
VPS41-202ENST00000310301 LTV1Q96GA3 475 aaPredicted RBP10.21□□□□□ -0.78
VPS41-202ENST00000310301 DAPK1P53355 1430 aa10.21□□□□□ -0.78
VPS41-202ENST00000310301 NLRP13Q86W25 1043 aa10.21□□□□□ -0.78
VPS41-202ENST00000310301 CAMSAP2Q08AD1 1489 aa10.2□□□□□ -0.78
VPS41-202ENST00000310301 MFAP1P55081 439 aaKnown RBP10.2□□□□□ -0.78
VPS41-202ENST00000310301 ZNF771Q7L3S4 317 aaPredicted RBP10.2□□□□□ -0.78
VPS41-202ENST00000310301 C1orf141Q5JVX7 400 aa10.2□□□□□ -0.78
VPS41-202ENST00000310301 SETQ01105 290 aaPredicted RBP10.2□□□□□ -0.78
VPS41-202ENST00000310301 RAPGEF4Q8WZA2 1011 aa10.2□□□□□ -0.78
VPS41-202ENST00000310301 L3MBTL2Q969R5 705 aa10.2□□□□□ -0.78
VPS41-202ENST00000310301 NGLY1Q96IV0 654 aa10.2□□□□□ -0.78
VPS41-202ENST00000310301 PDE3BQ13370 1112 aa10.19□□□□□ -0.78
VPS41-202ENST00000310301 FBXO31Q5XUX0 539 aaPredicted RBP10.19□□□□□ -0.78
VPS41-202ENST00000310301 CHD1O14646 1710 aa10.19□□□□□ -0.78
VPS41-202ENST00000310301 NUP153P49790 1475 aaKnown RBP10.19□□□□□ -0.78
VPS41-202ENST00000310301 FOXD4L1Q9NU39 408 aa10.19□□□□□ -0.78
VPS41-202ENST00000310301 ROCK1Q13464 1354 aa10.19□□□□□ -0.78
VPS41-202ENST00000310301 GNL2Q13823 731 aaKnown RBP10.18□□□□□ -0.78
VPS41-202ENST00000310301 PRDM11Q9NQV5 511 aa10.18□□□□□ -0.78
VPS41-202ENST00000310301 TIAM1Q13009 1591 aa10.18□□□□□ -0.78
VPS41-202ENST00000310301 NLRP6P59044 892 aa10.18□□□□□ -0.78
VPS41-202ENST00000310301 CFAP74Q9C0B2 1584 aa10.18□□□□□ -0.78
VPS41-202ENST00000310301 TPM4P67936 248 aa10.18□□□□□ -0.78
VPS41-202ENST00000310301 ZNF692Q9BU19 519 aaPredicted RBP10.18□□□□□ -0.78
VPS41-202ENST00000310301 APBB1O00213 710 aa10.18□□□□□ -0.78
VPS41-202ENST00000310301 RWDD1Q9H446 243 aaPredicted RBP10.18□□□□□ -0.78
VPS41-202ENST00000310301 ABTB2Q8N961 1025 aa10.17□□□□□ -0.78
VPS41-202ENST00000310301 ZMYM3Q14202 1370 aa10.17□□□□□ -0.78
VPS41-202ENST00000310301 CGNL1Q0VF96 1302 aa10.17□□□□□ -0.78
VPS41-202ENST00000310301 GTF2E1P29083 439 aaPredicted RBP10.17□□□□□ -0.78
VPS41-202ENST00000310301 AMOTL2Q9Y2J4 779 aa10.17□□□□□ -0.78
VPS41-202ENST00000310301 CTTNBP2Q8WZ74 1663 aa10.17□□□□□ -0.78
VPS41-202ENST00000310301 NLRP2Q9NX02 1062 aa10.17□□□□□ -0.78
VPS41-202ENST00000310301 HTATSF1O43719 755 aaKnown RBP10.16□□□□□ -0.78
VPS41-202ENST00000310301 LMOD3Q0VAK6 560 aa10.16□□□□□ -0.78
VPS41-202ENST00000310301 MAGI2Q86UL8 1455 aa10.16□□□□□ -0.78
VPS41-202ENST00000310301 A0A0U1RQG5 324 aaPredicted RBP10.16□□□□□ -0.78
VPS41-202ENST00000310301 KIAA1211Q6ZU35 1233 aa10.16□□□□□ -0.78
VPS41-202ENST00000310301 DDX11L8A8MPP1 907 aa10.16□□□□□ -0.78
VPS41-202ENST00000310301 ZNF330Q9Y3S2 320 aaPredicted RBP10.16□□□□□ -0.78
VPS41-202ENST00000310301 ERBINQ96RT1 1412 aa10.16□□□□□ -0.78
VPS41-202ENST00000310301 DISP1Q96F81 1524 aa10.16□□□□□ -0.78
VPS41-202ENST00000310301 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.15□□□□□ -0.78
VPS41-202ENST00000310301 PCF11O94913 1555 aaKnown RBP10.15□□□□□ -0.78
VPS41-202ENST00000310301 GOLGA2Q08379 1002 aa10.15□□□□□ -0.78
VPS41-202ENST00000310301 IDI1Q13907 227 aa10.15□□□□□ -0.78
VPS41-202ENST00000310301 ZFYVE16Q7Z3T8 1539 aa10.15□□□□□ -0.78
VPS41-202ENST00000310301 RTEL1-TNFRSF6BF6WH68 1400 aa10.15□□□□□ -0.78
VPS41-202ENST00000310301 CLSTN1O94985 981 aa10.15□□□□□ -0.78
VPS41-202ENST00000310301 SYTL4Q96C24 671 aaPredicted RBP10.15□□□□□ -0.78
VPS41-202ENST00000310301 KDM5BQ9UGL1 1544 aa10.15□□□□□ -0.78
VPS41-202ENST00000310301 SLC4A3P48751 1232 aa10.15□□□□□ -0.78
VPS41-202ENST00000310301 HSPA5P11021 654 aaKnown RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms