RNA–Protein interactions for RNA: ENST00000309469.8

ATG4D-201, Transcript of autophagy related 4D cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4D, Length 1,949 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-201ENST00000309469 NRXN1Q9ULB1 1477 aa29.28■■■□□ 2.28
ATG4D-201ENST00000309469 PPP6R1Q9UPN7 881 aa29.27■■■□□ 2.28
ATG4D-201ENST00000309469 IQGAP1P46940 1657 aa29.27■■■□□ 2.28
ATG4D-201ENST00000309469 RPGRIP1LQ68CZ1 1315 aa29.27■■■□□ 2.28
ATG4D-201ENST00000309469 PIK3C2BO00750 1634 aa29.26■■■□□ 2.27
ATG4D-201ENST00000309469 CFAP70Q5T0N1 1121 aa29.25■■■□□ 2.27
ATG4D-201ENST00000309469 TMF1P82094 1093 aa29.24■■■□□ 2.27
ATG4D-201ENST00000309469 DISP3Q9P2K9 1392 aa29.24■■■□□ 2.27
ATG4D-201ENST00000309469 SLC52A1Q9NWF4 448 aa29.22■■■□□ 2.27
ATG4D-201ENST00000309469 ARHGEF40Q8TER5 1519 aa29.21■■■□□ 2.27
ATG4D-201ENST00000309469 IDI1Q13907 227 aa29.2■■■□□ 2.27
ATG4D-201ENST00000309469 CCDC184Q52MB2 194 aa29.18■■■□□ 2.26
ATG4D-201ENST00000309469 EIF3AQ14152 1382 aaKnown RBP29.18■■■□□ 2.26
ATG4D-201ENST00000309469 PPLO60437 1756 aa29.18■■■□□ 2.26
ATG4D-201ENST00000309469 PREX1Q8TCU6 1659 aa29.17■■■□□ 2.26
ATG4D-201ENST00000309469 PIK3C2GO75747 1445 aa29.15■■■□□ 2.26
ATG4D-201ENST00000309469 FBXO31Q5XUX0 539 aaPredicted RBP29.14■■■□□ 2.25
ATG4D-201ENST00000309469 MRS2Q9HD23 443 aa29.14■■■□□ 2.25
ATG4D-201ENST00000309469 C14orf93Q9H972 538 aaKnown RBP29.13■■■□□ 2.25
ATG4D-201ENST00000309469 ERVK-7P63135 1459 aa29.11■■■□□ 2.25
ATG4D-201ENST00000309469 VGFO15240 615 aaPredicted RBP29.11■■■□□ 2.25
ATG4D-201ENST00000309469 SETBP1Q9Y6X0 1596 aa29.1■■■□□ 2.25
ATG4D-201ENST00000309469 MLECQ14165 292 aa29.1■■■□□ 2.25
ATG4D-201ENST00000309469 CNGB1Q14028 1251 aaPredicted RBP29.1■■■□□ 2.25
ATG4D-201ENST00000309469 NEXMIFQ5QGS0 1516 aa29.09■■■□□ 2.25
ATG4D-201ENST00000309469 CDCA8Q53HL2 280 aa29.08■■■□□ 2.25
ATG4D-201ENST00000309469 CLTCQ00610 1675 aaKnown RBP29.08■■■□□ 2.25
ATG4D-201ENST00000309469 PER1O15534 1290 aaPredicted RBP29.06■■■□□ 2.24
ATG4D-201ENST00000309469 SLC24A1O60721 1099 aa29.06■■■□□ 2.24
ATG4D-201ENST00000309469 KTN1Q86UP2 1357 aaKnown RBP29.06■■■□□ 2.24
ATG4D-201ENST00000309469 TMEM131LA2VDJ0 1609 aa29.04■■■□□ 2.24
ATG4D-201ENST00000309469 ZFYVE9O95405 1425 aa29.04■■■□□ 2.24
ATG4D-201ENST00000309469 RALBP1Q15311 655 aa29.04■■■□□ 2.24
ATG4D-201ENST00000309469 PANK3Q9H999 370 aa29.04■■■□□ 2.24
ATG4D-201ENST00000309469 NUTM2DQ5VT03 806 aaPredicted RBP29.03■■■□□ 2.24
ATG4D-201ENST00000309469 ADGRB1O14514 1584 aa29.02■■■□□ 2.24
ATG4D-201ENST00000309469 HNRNPUQ00839 825 aaKnown RBP eCLIP29■■■□□ 2.23
ATG4D-201ENST00000309469 FAM9BQ8IZU0 186 aa29■■■□□ 2.23
ATG4D-201ENST00000309469 SPATA31D1Q6ZQQ2 1576 aa28.99■■■□□ 2.23
ATG4D-201ENST00000309469 ESF1Q9H501 851 aaKnown RBP28.99■■■□□ 2.23
ATG4D-201ENST00000309469 MYO3AQ8NEV4 1616 aa28.98■■■□□ 2.23
ATG4D-201ENST00000309469 TMEM132EQ6IEE7 984 aa28.98■■■□□ 2.23
ATG4D-201ENST00000309469 SBNO2Q9Y2G9 1366 aa28.96■■■□□ 2.23
ATG4D-201ENST00000309469 TRAK1Q9UPV9 953 aa28.96■■■□□ 2.23
ATG4D-201ENST00000309469 MYBBP1AQ9BQG0 1328 aaKnown RBP28.96■■■□□ 2.23
ATG4D-201ENST00000309469 CENPJQ9HC77 1338 aaPredicted RBP28.96■■■□□ 2.23
ATG4D-201ENST00000309469 ZMYM3Q14202 1370 aa28.95■■■□□ 2.22
ATG4D-201ENST00000309469 STAG3Q9UJ98 1225 aa28.94■■■□□ 2.22
ATG4D-201ENST00000309469 PARD3Q8TEW0 1356 aa28.94■■■□□ 2.22
ATG4D-201ENST00000309469 MYO5BQ9ULV0 1848 aa28.94■■■□□ 2.22
ATG4D-201ENST00000309469 TMC1Q8TDI8 760 aa28.91■■■□□ 2.22
ATG4D-201ENST00000309469 TRHP20396 242 aaPredicted RBP28.9■■■□□ 2.22
ATG4D-201ENST00000309469 BRD4O60885 1362 aaPredicted RBP28.9■■■□□ 2.22
ATG4D-201ENST00000309469 KDM5AP29375 1690 aaKnown RBP28.89■■■□□ 2.22
ATG4D-201ENST00000309469 A2ML1A8K2U0 1454 aa28.87■■■□□ 2.21
ATG4D-201ENST00000309469 CC2D1BQ5T0F9 858 aaKnown RBP28.86■■■□□ 2.21
ATG4D-201ENST00000309469 PNISRQ8TF01 805 aaKnown RBP28.86■■■□□ 2.21
ATG4D-201ENST00000309469 KNSTRNQ9Y448 316 aa28.85■■■□□ 2.21
ATG4D-201ENST00000309469 NLRP13Q86W25 1043 aa28.84■■■□□ 2.21
ATG4D-201ENST00000309469 MYOM1P52179 1685 aa28.84■■■□□ 2.21
ATG4D-201ENST00000309469 QRICH2Q9H0J4 1663 aa28.81■■■□□ 2.2
ATG4D-201ENST00000309469 ASXL1Q8IXJ9 1541 aa28.8■■■□□ 2.2
ATG4D-201ENST00000309469 SENP3Q9H4L4 574 aaPredicted RBP28.79■■■□□ 2.2
ATG4D-201ENST00000309469 RIMS2Q9UQ26 1411 aa28.79■■■□□ 2.2
ATG4D-201ENST00000309469 AMER1Q5JTC6 1135 aaPredicted RBP28.79■■■□□ 2.2
ATG4D-201ENST00000309469 ZBED9Q6R2W3 1325 aa28.78■■■□□ 2.2
ATG4D-201ENST00000309469 TNRQ92752 1358 aa28.77■■■□□ 2.2
ATG4D-201ENST00000309469 ARHGEF28Q8N1W1 1705 aaKnown RBP28.77■■■□□ 2.2
ATG4D-201ENST00000309469 ALKQ9UM73 1620 aa28.75■■■□□ 2.19
ATG4D-201ENST00000309469 PELP1Q8IZL8 1130 aaKnown RBP28.75■■■□□ 2.19
ATG4D-201ENST00000309469 STK26Q9P289 416 aa28.75■■■□□ 2.19
ATG4D-201ENST00000309469 LRPPRCP42704 1394 aaKnown RBP28.74■■■□□ 2.19
ATG4D-201ENST00000309469 NPC1L1Q9UHC9 1359 aa28.74■■■□□ 2.19
ATG4D-201ENST00000309469 PUS7Q96PZ0 661 aaKnown RBP28.73■■■□□ 2.19
ATG4D-201ENST00000309469 YTHDC2Q9H6S0 1430 aaKnown RBP28.72■■■□□ 2.19
ATG4D-201ENST00000309469 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.72■■■□□ 2.19
ATG4D-201ENST00000309469 EVC2Q86UK5 1308 aa28.71■■■□□ 2.19
ATG4D-201ENST00000309469 CARD14Q9BXL6 1004 aa28.69■■■□□ 2.18
ATG4D-201ENST00000309469 PTPRMP28827 1452 aa28.68■■■□□ 2.18
ATG4D-201ENST00000309469 HDGFP51858 240 aaKnown RBP28.67■■■□□ 2.18
ATG4D-201ENST00000309469 TULP4Q9NRJ4 1543 aa28.66■■■□□ 2.18
ATG4D-201ENST00000309469 SUPT16HQ9Y5B9 1047 aaKnown RBP28.66■■■□□ 2.18
ATG4D-201ENST00000309469 SAFB2Q14151 953 aaKnown RBP eCLIP28.65■■■□□ 2.18
ATG4D-201ENST00000309469 PPP2R1AP30153 589 aa28.65■■■□□ 2.18
ATG4D-201ENST00000309469 SLC12A5Q9H2X9 1139 aa28.65■■■□□ 2.18
ATG4D-201ENST00000309469 PRAM1Q96QH2 718 aa28.64■■■□□ 2.18
ATG4D-201ENST00000309469 POGKQ9P215 609 aa28.63■■■□□ 2.17
ATG4D-201ENST00000309469 CEBPAP49715 358 aaPredicted RBP28.63■■■□□ 2.17
ATG4D-201ENST00000309469 TMEM2Q9UHN6 1383 aa28.6■■■□□ 2.17
ATG4D-201ENST00000309469 NLRP1Q9C000 1473 aa28.59■■■□□ 2.17
ATG4D-201ENST00000309469 DNAJC5Q9H3Z4 198 aa28.59■■■□□ 2.17
ATG4D-201ENST00000309469 CABP2Q9NPB3 220 aa28.59■■■□□ 2.17
ATG4D-201ENST00000309469 UBR1Q8IWV7 1749 aa28.59■■■□□ 2.17
ATG4D-201ENST00000309469 SETD1AO15047 1707 aaKnown RBP28.58■■■□□ 2.16
ATG4D-201ENST00000309469 DLC1Q96QB1 1528 aa28.57■■■□□ 2.16
ATG4D-201ENST00000309469 NRXN3Q9Y4C0 1643 aa28.57■■■□□ 2.16
ATG4D-201ENST00000309469 MINK1Q8N4C8 1332 aaPredicted RBP28.56■■■□□ 2.16
ATG4D-201ENST00000309469 NSD3Q9BZ95 1437 aa28.56■■■□□ 2.16
ATG4D-201ENST00000309469 NEFLP07196 543 aa28.55■■■□□ 2.16
ATG4D-201ENST00000309469 FKBP8Q14318 412 aa28.55■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms