RNA–Protein interactions for RNA: ENST00000308987.5

CKS1B-201, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKS1B, Length 759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-201ENST00000308987 RNF223E7ERA6 249 aa9.28□□□□□ -0.92
CKS1B-201ENST00000308987 DGAT1O75907 488 aa9.28□□□□□ -0.92
CKS1B-201ENST00000308987 OSBPP22059 807 aa9.28□□□□□ -0.92
CKS1B-201ENST00000308987 PKDCCQ504Y2 493 aa9.28□□□□□ -0.92
CKS1B-201ENST00000308987 TTC13Q8NBP0 860 aa9.27□□□□□ -0.93
CKS1B-201ENST00000308987 CUX2O14529 1486 aa9.27□□□□□ -0.93
CKS1B-201ENST00000308987 ATAD2BQ9ULI0 1458 aa9.26□□□□□ -0.93
CKS1B-201ENST00000308987 SPRYD7Q5W111 196 aa9.25□□□□□ -0.93
CKS1B-201ENST00000308987 PADI6Q6TGC4 694 aa9.24□□□□□ -0.93
CKS1B-201ENST00000308987 ZNF598Q86UK7 904 aaKnown RBP9.24□□□□□ -0.93
CKS1B-201ENST00000308987 NPDC1Q9NQX5 325 aaPredicted RBP9.24□□□□□ -0.93
CKS1B-201ENST00000308987 PCDHB3Q9Y5E6 796 aa9.24□□□□□ -0.93
CKS1B-201ENST00000308987 NESP48681 1621 aa9.23□□□□□ -0.93
CKS1B-201ENST00000308987 SMARCA4P51532 1647 aa9.23□□□□□ -0.93
CKS1B-201ENST00000308987 PRR20EP86478 221 aa9.23□□□□□ -0.93
CKS1B-201ENST00000308987 PRR20CP86479 221 aa9.23□□□□□ -0.93
CKS1B-201ENST00000308987 PRR20DP86480 221 aa9.23□□□□□ -0.93
CKS1B-201ENST00000308987 PRR20BP86481 221 aa9.23□□□□□ -0.93
CKS1B-201ENST00000308987 PRR20AP86496 221 aa9.23□□□□□ -0.93
CKS1B-201ENST00000308987 E2F4Q16254 413 aa9.23□□□□□ -0.93
CKS1B-201ENST00000308987 ARIH1Q9Y4X5 557 aaPredicted RBP9.23□□□□□ -0.93
CKS1B-201ENST00000308987 BLOC1S3Q6QNY0 202 aa9.22□□□□□ -0.93
CKS1B-201ENST00000308987 ERCC6Q03468 1493 aa9.21□□□□□ -0.93
CKS1B-201ENST00000308987 SLC4A3P48751 1232 aa9.21□□□□□ -0.94
CKS1B-201ENST00000308987 LIAT1Q6ZQX7 453 aa9.21□□□□□ -0.94
CKS1B-201ENST00000308987 EYA1Q99502 592 aa9.21□□□□□ -0.94
CKS1B-201ENST00000308987 HMGXB3Q12766 1538 aa9.21□□□□□ -0.94
CKS1B-201ENST00000308987 PPEF1O14829 653 aaPredicted RBP9.2□□□□□ -0.94
CKS1B-201ENST00000308987 PRR14Q9BWN1 585 aa9.2□□□□□ -0.94
CKS1B-201ENST00000308987 FAM187AA6NFU0 413 aa9.19□□□□□ -0.94
CKS1B-201ENST00000308987 ANKLE1Q8NAG6 615 aa9.19□□□□□ -0.94
CKS1B-201ENST00000308987 SMARCA2P51531 1590 aa9.19□□□□□ -0.94
CKS1B-201ENST00000308987 TLL1O43897 1013 aa9.18□□□□□ -0.94
CKS1B-201ENST00000308987 ZNF697Q5TEC3 545 aa9.18□□□□□ -0.94
CKS1B-201ENST00000308987 TREML4Q6UXN2 200 aa9.18□□□□□ -0.94
CKS1B-201ENST00000308987 THOC2Q8NI27 1593 aaKnown RBP9.17□□□□□ -0.94
CKS1B-201ENST00000308987 TNFRSF10AO00220 468 aa9.17□□□□□ -0.94
CKS1B-201ENST00000308987 GDF9O60383 454 aa9.17□□□□□ -0.94
CKS1B-201ENST00000308987 LCE2AQ5TA79 106 aaPredicted RBP9.17□□□□□ -0.94
CKS1B-201ENST00000308987 S1PR4O95977 384 aa9.16□□□□□ -0.94
CKS1B-201ENST00000308987 ST8SIA5O15466 376 aa9.15□□□□□ -0.94
CKS1B-201ENST00000308987 KIF21AQ7Z4S6 1674 aa9.15□□□□□ -0.94
CKS1B-201ENST00000308987 BBXQ8WY36 941 aaPredicted RBP9.14□□□□□ -0.95
CKS1B-201ENST00000308987 AAASQ9NRG9 546 aa9.14□□□□□ -0.95
CKS1B-201ENST00000308987 PEG3Q9GZU2 1588 aa9.14□□□□□ -0.95
CKS1B-201ENST00000308987 WDR70Q9NW82 654 aa9.12□□□□□ -0.95
CKS1B-201ENST00000308987 BAZ1BQ9UIG0 1483 aaKnown RBP9.12□□□□□ -0.95
CKS1B-201ENST00000308987 BAZ1AQ9NRL2 1556 aaPredicted RBP9.12□□□□□ -0.95
CKS1B-201ENST00000308987 ACTN4O43707 911 aaKnown RBP9.11□□□□□ -0.95
CKS1B-201ENST00000308987 MROH2BQ7Z745 1585 aa9.11□□□□□ -0.95
CKS1B-201ENST00000308987 DNAJB2P25686 324 aa9.1□□□□□ -0.95
CKS1B-201ENST00000308987 PLA2G2CQ5R387 149 aa9.1□□□□□ -0.95
CKS1B-201ENST00000308987 LAMC3Q9Y6N6 1575 aa9.09□□□□□ -0.95
CKS1B-201ENST00000308987 KMT5BQ4FZB7 885 aa9.09□□□□□ -0.95
CKS1B-201ENST00000308987 ADH1BP00325 375 aa9.08□□□□□ -0.96
CKS1B-201ENST00000308987 SPRYD3Q8NCJ5 442 aa9.08□□□□□ -0.96
CKS1B-201ENST00000308987 TMEM134Q9H6X4 195 aa9.08□□□□□ -0.96
CKS1B-201ENST00000308987 SLC6A16Q9GZN6 736 aa9.07□□□□□ -0.96
CKS1B-201ENST00000308987 PKD2L1Q9P0L9 805 aa9.07□□□□□ -0.96
CKS1B-201ENST00000308987 DACH1Q9UI36 760 aa9.07□□□□□ -0.96
CKS1B-201ENST00000308987 CFHP08603 1231 aa9.06□□□□□ -0.96
CKS1B-201ENST00000308987 FOXC1Q12948 553 aa9.06□□□□□ -0.96
CKS1B-201ENST00000308987 NR1I2O75469 434 aa9.05□□□□□ -0.96
CKS1B-201ENST00000308987 RBM46Q8TBY0 533 aaKnown RBP9.05□□□□□ -0.96
CKS1B-201ENST00000308987 RCCD1A6NED2 376 aa9.03□□□□□ -0.96
CKS1B-201ENST00000308987 WFS1O76024 890 aa9.03□□□□□ -0.96
CKS1B-201ENST00000308987 SLC10A3P09131 477 aa9.03□□□□□ -0.96
CKS1B-201ENST00000308987 CRIPAKQ8N1N5 446 aa9.03□□□□□ -0.96
CKS1B-201ENST00000308987 ADGRG1Q9Y653 693 aa9.03□□□□□ -0.96
CKS1B-201ENST00000308987 WIZO95785 1651 aa9.02□□□□□ -0.97
CKS1B-201ENST00000308987 LMOD2Q6P5Q4 547 aa9.02□□□□□ -0.97
CKS1B-201ENST00000308987 SCUBE3Q8IX30 993 aa9.02□□□□□ -0.97
CKS1B-201ENST00000308987 GMPR2Q9P2T1 348 aaKnown RBP9.02□□□□□ -0.97
CKS1B-201ENST00000308987 PTGDRQ13258 359 aa9.01□□□□□ -0.97
CKS1B-201ENST00000308987 FAM161AQ3B820 660 aa9.01□□□□□ -0.97
CKS1B-201ENST00000308987 C11orf95C9JLR9 678 aaPredicted RBP9□□□□□ -0.97
CKS1B-201ENST00000308987 MLLT3P42568 568 aaPredicted RBP9□□□□□ -0.97
CKS1B-201ENST00000308987 PDS5BQ9NTI5 1447 aa8.99□□□□□ -0.97
CKS1B-201ENST00000308987 AVPP01185 164 aa8.99□□□□□ -0.97
CKS1B-201ENST00000308987 TOR4AQ9NXH8 423 aa8.99□□□□□ -0.97
CKS1B-201ENST00000308987 AXIN1O15169 862 aa8.98□□□□□ -0.97
CKS1B-201ENST00000308987 STK17AQ9UEE5 414 aa8.98□□□□□ -0.97
CKS1B-201ENST00000308987 CADPSQ9ULU8 1353 aa8.98□□□□□ -0.97
CKS1B-201ENST00000308987 WDR62O43379 1518 aa8.97□□□□□ -0.97
CKS1B-201ENST00000308987 RPIAP49247 311 aa8.97□□□□□ -0.97
CKS1B-201ENST00000308987 NFX1Q12986 1120 aaKnown RBP8.97□□□□□ -0.97
CKS1B-201ENST00000308987 PUS10Q3MIT2 529 aaKnown RBP8.97□□□□□ -0.97
CKS1B-201ENST00000308987 SPSB2Q99619 263 aa8.97□□□□□ -0.97
CKS1B-201ENST00000308987 MRC2Q9UBG0 1479 aa8.96□□□□□ -0.97
CKS1B-201ENST00000308987 CYP4X1Q8N118 509 aa8.96□□□□□ -0.98
CKS1B-201ENST00000308987 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.96□□□□□ -0.98
CKS1B-201ENST00000308987 WIPF1O43516 503 aa8.95□□□□□ -0.98
CKS1B-201ENST00000308987 CD2BP2O95400 341 aaKnown RBP8.95□□□□□ -0.98
CKS1B-201ENST00000308987 CTC1Q2NKJ3 1217 aa8.94□□□□□ -0.98
CKS1B-201ENST00000308987 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.93□□□□□ -0.98
CKS1B-201ENST00000308987 SMCPP49901 116 aaPredicted RBP8.93□□□□□ -0.98
CKS1B-201ENST00000308987 INSM1Q01101 510 aaPredicted RBP8.93□□□□□ -0.98
CKS1B-201ENST00000308987 PAXIP1Q6ZW49 1069 aaPredicted RBP8.92□□□□□ -0.98
CKS1B-201ENST00000308987 CFAP44Q96MT7 982 aa8.92□□□□□ -0.98
CKS1B-201ENST00000308987 FCF1Q9Y324 198 aaKnown RBP8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms