RNA–Protein interactions for RNA: ENST00000308077.9

PTCD2-201, Transcript of pentatricopeptide repeat domain 2, humanhuman

TSL 1 (best)

Gene PTCD2, Length 2,195 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2-201ENST00000308077 SYNMO15061 1565 aa9.95□□□□□ -0.82
PTCD2-201ENST00000308077 MROH2AA6NES4 1674 aa9.95□□□□□ -0.82
PTCD2-201ENST00000308077 KIF1BO60333 1816 aa9.94□□□□□ -0.82
PTCD2-201ENST00000308077 NOS1P29475 1434 aa9.94□□□□□ -0.82
PTCD2-201ENST00000308077 NHSL1Q5SYE7 1610 aa9.93□□□□□ -0.82
PTCD2-201ENST00000308077 ALKQ9UM73 1620 aa9.93□□□□□ -0.82
PTCD2-201ENST00000308077 CNTLNQ9NXG0 1405 aa9.93□□□□□ -0.82
PTCD2-201ENST00000308077 NEURL4Q96JN8 1562 aa9.93□□□□□ -0.82
PTCD2-201ENST00000308077 RGL3Q3MIN7 710 aa9.93□□□□□ -0.82
PTCD2-201ENST00000308077 PIK3C2BO00750 1634 aa9.93□□□□□ -0.82
PTCD2-201ENST00000308077 ZNF335Q9H4Z2 1342 aaPredicted RBP9.93□□□□□ -0.82
PTCD2-201ENST00000308077 FER1L4A9Z1Z3 1794 aa9.92□□□□□ -0.82
PTCD2-201ENST00000308077 DCAF11Q8TEB1 546 aa9.92□□□□□ -0.82
PTCD2-201ENST00000308077 MLECQ14165 292 aa9.92□□□□□ -0.82
PTCD2-201ENST00000308077 ADGRB3O60242 1522 aa9.91□□□□□ -0.82
PTCD2-201ENST00000308077 CPS1P31327 1500 aa9.91□□□□□ -0.82
PTCD2-201ENST00000308077 PPP6R1Q9UPN7 881 aa9.91□□□□□ -0.82
PTCD2-201ENST00000308077 KDM2AQ9Y2K7 1162 aa9.91□□□□□ -0.82
PTCD2-201ENST00000308077 IFT172Q9UG01 1749 aa9.91□□□□□ -0.82
PTCD2-201ENST00000308077 PRAG1Q86YV5 1406 aa9.91□□□□□ -0.82
PTCD2-201ENST00000308077 TRPM1Q7Z4N2 1603 aa9.91□□□□□ -0.82
PTCD2-201ENST00000308077 ZNF326Q5BKZ1 582 aaKnown RBP9.91□□□□□ -0.82
PTCD2-201ENST00000308077 RALGAPBQ86X10 1494 aa9.91□□□□□ -0.82
PTCD2-201ENST00000308077 ARID4BQ4LE39 1312 aaPredicted RBP9.91□□□□□ -0.82
PTCD2-201ENST00000308077 ERVK-7P63135 1459 aa9.9□□□□□ -0.83
PTCD2-201ENST00000308077 HIRIP3Q9BW71 556 aaPredicted RBP9.9□□□□□ -0.83
PTCD2-201ENST00000308077 SENP3Q9H4L4 574 aaPredicted RBP9.89□□□□□ -0.83
PTCD2-201ENST00000308077 MYO5BQ9ULV0 1848 aa9.88□□□□□ -0.83
PTCD2-201ENST00000308077 FBXO31Q5XUX0 539 aaPredicted RBP9.88□□□□□ -0.83
PTCD2-201ENST00000308077 PPLO60437 1756 aa9.87□□□□□ -0.83
PTCD2-201ENST00000308077 HSPA5P11021 654 aaKnown RBP9.87□□□□□ -0.83
PTCD2-201ENST00000308077 DIEXFQ68CQ4 756 aaKnown RBP9.87□□□□□ -0.83
PTCD2-201ENST00000308077 LRRC7Q96NW7 1537 aa9.86□□□□□ -0.83
PTCD2-201ENST00000308077 MYOM2P54296 1465 aa9.86□□□□□ -0.83
PTCD2-201ENST00000308077 TMEM131LA2VDJ0 1609 aa9.86□□□□□ -0.83
PTCD2-201ENST00000308077 ZMYM3Q14202 1370 aa9.85□□□□□ -0.83
PTCD2-201ENST00000308077 EIF4G2P78344 907 aaKnown RBP eCLIP9.85□□□□□ -0.83
PTCD2-201ENST00000308077 IDI1Q13907 227 aa9.85□□□□□ -0.83
PTCD2-201ENST00000308077 LAMC1P11047 1609 aa9.85□□□□□ -0.83
PTCD2-201ENST00000308077 CHGAP10645 457 aaKnown RBP9.84□□□□□ -0.83
PTCD2-201ENST00000308077 NEXMIFQ5QGS0 1516 aa9.84□□□□□ -0.83
PTCD2-201ENST00000308077 NRXN1Q9ULB1 1477 aa9.84□□□□□ -0.83
PTCD2-201ENST00000308077 ROCK2O75116 1388 aaKnown RBP9.84□□□□□ -0.83
PTCD2-201ENST00000308077 GPRASP1Q5JY77 1395 aa9.84□□□□□ -0.83
PTCD2-201ENST00000308077 SLC52A1Q9NWF4 448 aa9.84□□□□□ -0.83
PTCD2-201ENST00000308077 USP47Q96K76 1375 aa9.83□□□□□ -0.84
PTCD2-201ENST00000308077 KIAA1210Q9ULL0 1709 aa9.83□□□□□ -0.84
PTCD2-201ENST00000308077 NBPF1Q3BBV0 1214 aa9.83□□□□□ -0.84
PTCD2-201ENST00000308077 ESF1Q9H501 851 aaKnown RBP9.83□□□□□ -0.84
PTCD2-201ENST00000308077 C3P01024 1663 aa9.83□□□□□ -0.84
PTCD2-201ENST00000308077 STAC3Q96MF2 364 aa9.82□□□□□ -0.84
PTCD2-201ENST00000308077 CARD11Q9BXL7 1154 aa9.82□□□□□ -0.84
PTCD2-201ENST00000308077 ADGRF5Q8IZF2 1346 aa9.82□□□□□ -0.84
PTCD2-201ENST00000308077 POLR1AO95602 1720 aaPredicted RBP9.82□□□□□ -0.84
PTCD2-201ENST00000308077 IQGAP1P46940 1657 aa9.81□□□□□ -0.84
PTCD2-201ENST00000308077 RPGRIP1LQ68CZ1 1315 aa9.8□□□□□ -0.84
PTCD2-201ENST00000308077 PIK3C2GO75747 1445 aa9.8□□□□□ -0.84
PTCD2-201ENST00000308077 C11orf95C9JLR9 678 aaPredicted RBP9.8□□□□□ -0.84
PTCD2-201ENST00000308077 A2ML1A8K2U0 1454 aa9.79□□□□□ -0.84
PTCD2-201ENST00000308077 TNRQ92752 1358 aa9.79□□□□□ -0.84
PTCD2-201ENST00000308077 WASHC2AQ641Q2 1341 aa9.79□□□□□ -0.84
PTCD2-201ENST00000308077 CEBPAP49715 358 aaPredicted RBP9.78□□□□□ -0.84
PTCD2-201ENST00000308077 ZNF772Q68DY9 489 aaPredicted RBP9.78□□□□□ -0.84
PTCD2-201ENST00000308077 UBR1Q8IWV7 1749 aa9.78□□□□□ -0.84
PTCD2-201ENST00000308077 CFAP70Q5T0N1 1121 aa9.78□□□□□ -0.84
PTCD2-201ENST00000308077 NUTM2DQ5VT03 806 aaPredicted RBP9.78□□□□□ -0.84
PTCD2-201ENST00000308077 ZNF784Q8NCA9 323 aaPredicted RBP9.78□□□□□ -0.84
PTCD2-201ENST00000308077 KDM5AP29375 1690 aaKnown RBP9.78□□□□□ -0.84
PTCD2-201ENST00000308077 SRCAPQ6ZRS2 3230 aa9.78□□□□□ -0.84
PTCD2-201ENST00000308077 CAPN15O75808 1086 aa9.77□□□□□ -0.85
PTCD2-201ENST00000308077 DDX10Q13206 875 aaKnown RBP9.77□□□□□ -0.85
PTCD2-201ENST00000308077 ZFYVE9O95405 1425 aa9.77□□□□□ -0.85
PTCD2-201ENST00000308077 ST20-MTHFSA0A0A6YYL1 179 aa9.77□□□□□ -0.85
PTCD2-201ENST00000308077 CCDC7Q96M83 1385 aa9.76□□□□□ -0.85
PTCD2-201ENST00000308077 ADGRB1O14514 1584 aa9.76□□□□□ -0.85
PTCD2-201ENST00000308077 SCAF11Q99590 1463 aaKnown RBP9.75□□□□□ -0.85
PTCD2-201ENST00000308077 KIF7Q2M1P5 1343 aa9.75□□□□□ -0.85
PTCD2-201ENST00000308077 VGFO15240 615 aaPredicted RBP9.75□□□□□ -0.85
PTCD2-201ENST00000308077 STAG3Q9UJ98 1225 aa9.75□□□□□ -0.85
PTCD2-201ENST00000308077 RIMS2Q9UQ26 1411 aa9.75□□□□□ -0.85
PTCD2-201ENST00000308077 NLRP1Q9C000 1473 aa9.74□□□□□ -0.85
PTCD2-201ENST00000308077 ASXL1Q8IXJ9 1541 aa9.74□□□□□ -0.85
PTCD2-201ENST00000308077 C14orf93Q9H972 538 aaKnown RBP9.74□□□□□ -0.85
PTCD2-201ENST00000308077 MYO3AQ8NEV4 1616 aa9.74□□□□□ -0.85
PTCD2-201ENST00000308077 MIER1Q8N108 512 aa9.74□□□□□ -0.85
PTCD2-201ENST00000308077 RXRBP28702 533 aa9.73□□□□□ -0.85
PTCD2-201ENST00000308077 TESK2Q96S53 571 aa9.73□□□□□ -0.85
PTCD2-201ENST00000308077 NRXN3Q9Y4C0 1643 aa9.72□□□□□ -0.85
PTCD2-201ENST00000308077 CCDC125Q86Z20 511 aa9.72□□□□□ -0.85
PTCD2-201ENST00000308077 ATAD2Q6PL18 1390 aa9.72□□□□□ -0.85
PTCD2-201ENST00000308077 ARHGEF28Q8N1W1 1705 aaKnown RBP9.71□□□□□ -0.86
PTCD2-201ENST00000308077 TMEM132EQ6IEE7 984 aa9.71□□□□□ -0.86
PTCD2-201ENST00000308077 TMEM2Q9UHN6 1383 aa9.7□□□□□ -0.86
PTCD2-201ENST00000308077 EIF3AQ14152 1382 aaKnown RBP9.7□□□□□ -0.86
PTCD2-201ENST00000308077 CEP170BQ9Y4F5 1589 aaPredicted RBP9.7□□□□□ -0.86
PTCD2-201ENST00000308077 ZNF142P52746 1687 aaPredicted RBP9.69□□□□□ -0.86
PTCD2-201ENST00000308077 SLIT1O75093 1534 aa9.69□□□□□ -0.86
PTCD2-201ENST00000308077 ARHGAP23Q9P227 1491 aa9.69□□□□□ -0.86
PTCD2-201ENST00000308077 QRICH2Q9H0J4 1663 aa9.69□□□□□ -0.86
PTCD2-201ENST00000308077 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms