RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 AKNAQ7Z591 1439 aa15.73■□□□□ 0.11
COL3A1-201ENST00000304636 MCTP1Q6DN14 999 aa15.73■□□□□ 0.11
COL3A1-201ENST00000304636 PANK1Q8TE04 598 aa15.72■□□□□ 0.11
COL3A1-201ENST00000304636 TPM2P07951 284 aa15.72■□□□□ 0.11
COL3A1-201ENST00000304636 ERICH3Q5RHP9 1530 aa15.72■□□□□ 0.11
COL3A1-201ENST00000304636 TPM3P06753 285 aa15.72■□□□□ 0.11
COL3A1-201ENST00000304636 FAM184AQ8NB25 1140 aa15.72■□□□□ 0.11
COL3A1-201ENST00000304636 CDCA7LQ96GN5 454 aa15.72■□□□□ 0.11
COL3A1-201ENST00000304636 STAC3Q96MF2 364 aa15.72■□□□□ 0.11
COL3A1-201ENST00000304636 ADAMTS8Q9UP79 889 aa15.72■□□□□ 0.11
COL3A1-201ENST00000304636 WASHC2CQ9Y4E1 1318 aa15.71■□□□□ 0.11
COL3A1-201ENST00000304636 CASKIN1Q8WXD9 1431 aa15.71■□□□□ 0.11
COL3A1-201ENST00000304636 CCDC39Q9UFE4 941 aa15.71■□□□□ 0.11
COL3A1-201ENST00000304636 FYCO1Q9BQS8 1478 aa15.71■□□□□ 0.11
COL3A1-201ENST00000304636 NOC3LQ8WTT2 800 aaKnown RBP15.71■□□□□ 0.11
COL3A1-201ENST00000304636 RUFY2Q8WXA3 655 aa15.71■□□□□ 0.11
COL3A1-201ENST00000304636 RIPK4P57078 832 aa15.7■□□□□ 0.1
COL3A1-201ENST00000304636 ANO8Q9HCE9 1232 aaPredicted RBP15.7■□□□□ 0.1
COL3A1-201ENST00000304636 DIAPH1O60610 1272 aaKnown RBP15.7■□□□□ 0.1
COL3A1-201ENST00000304636 NUTM2DQ5VT03 806 aaPredicted RBP15.7■□□□□ 0.1
COL3A1-201ENST00000304636 JPH4Q96JJ6 628 aa15.7■□□□□ 0.1
COL3A1-201ENST00000304636 LNPKQ9C0E8 428 aa15.7■□□□□ 0.1
COL3A1-201ENST00000304636 DIAPH3Q9NSV4 1193 aa15.69■□□□□ 0.1
COL3A1-201ENST00000304636 GPS2Q13227 327 aa15.69■□□□□ 0.1
COL3A1-201ENST00000304636 NCOA2Q15596 1464 aa15.69■□□□□ 0.1
COL3A1-201ENST00000304636 CHMP3Q9Y3E7 222 aa15.69■□□□□ 0.1
COL3A1-201ENST00000304636 ARAP1Q96P48 1450 aa15.69■□□□□ 0.1
COL3A1-201ENST00000304636 CDC45O75419 566 aa15.68■□□□□ 0.1
COL3A1-201ENST00000304636 AMPHP49418 695 aa15.68■□□□□ 0.1
COL3A1-201ENST00000304636 ZNF592Q92610 1267 aa15.68■□□□□ 0.1
COL3A1-201ENST00000304636 ZKSCAN1P17029 563 aaPredicted RBP15.68■□□□□ 0.1
COL3A1-201ENST00000304636 VGFO15240 615 aaPredicted RBP15.68■□□□□ 0.1
COL3A1-201ENST00000304636 R3HCC1Q9Y3T6 440 aaKnown RBP15.68■□□□□ 0.1
COL3A1-201ENST00000304636 PDE3AQ14432 1141 aa15.68■□□□□ 0.1
COL3A1-201ENST00000304636 ISY1Q9ULR0 285 aaKnown RBP15.67■□□□□ 0.1
COL3A1-201ENST00000304636 COG3Q96JB2 828 aa15.67■□□□□ 0.1
COL3A1-201ENST00000304636 PNISRQ8TF01 805 aaKnown RBP15.66■□□□□ 0.1
COL3A1-201ENST00000304636 FANCD2Q9BXW9 1451 aa15.66■□□□□ 0.1
COL3A1-201ENST00000304636 CCDC173Q0VFZ6 552 aa15.66■□□□□ 0.1
COL3A1-201ENST00000304636 ANO2Q9NQ90 1003 aa15.66■□□□□ 0.1
COL3A1-201ENST00000304636 FGD5Q6ZNL6 1462 aa15.65■□□□□ 0.1
COL3A1-201ENST00000304636 A0A0U1RQG5 324 aaPredicted RBP15.65■□□□□ 0.1
COL3A1-201ENST00000304636 TAF7LQ5H9L4 462 aa15.65■□□□□ 0.1
COL3A1-201ENST00000304636 TEX35Q5T0J7 233 aa15.65■□□□□ 0.1
COL3A1-201ENST00000304636 GNAI1P63096 354 aa15.64■□□□□ 0.09
COL3A1-201ENST00000304636 ANKRD50Q9ULJ7 1429 aa15.64■□□□□ 0.09
COL3A1-201ENST00000304636 PDZRN3Q9UPQ7 1066 aa15.64■□□□□ 0.09
COL3A1-201ENST00000304636 MSH5O43196 834 aa15.64■□□□□ 0.09
COL3A1-201ENST00000304636 SMC3Q9UQE7 1217 aa15.64■□□□□ 0.09
COL3A1-201ENST00000304636 NGDNQ8NEJ9 315 aaKnown RBP15.63■□□□□ 0.09
COL3A1-201ENST00000304636 WDR97A6NE52 1622 aa15.63■□□□□ 0.09
COL3A1-201ENST00000304636 NINLQ9Y2I6 1382 aa15.63■□□□□ 0.09
COL3A1-201ENST00000304636 PPP2R1AP30153 589 aa15.63■□□□□ 0.09
COL3A1-201ENST00000304636 MBD3O95983 291 aa15.63■□□□□ 0.09
COL3A1-201ENST00000304636 RASSF8Q8NHQ8 419 aa15.63■□□□□ 0.09
COL3A1-201ENST00000304636 CREBRFQ8IUR6 639 aa15.62■□□□□ 0.09
COL3A1-201ENST00000304636 CCAR2Q8N163 923 aaKnown RBP15.62■□□□□ 0.09
COL3A1-201ENST00000304636 ZNF644Q9H582 1327 aaPredicted RBP15.62■□□□□ 0.09
COL3A1-201ENST00000304636 SETQ01105 290 aaPredicted RBP15.62■□□□□ 0.09
COL3A1-201ENST00000304636 BICD2Q8TD16 824 aa15.62■□□□□ 0.09
COL3A1-201ENST00000304636 CSB-PGBD3P0DP91 1061 aa15.62■□□□□ 0.09
COL3A1-201ENST00000304636 TPM1P09493 284 aa15.61■□□□□ 0.09
COL3A1-201ENST00000304636 SASS6Q6UVJ0 657 aa15.61■□□□□ 0.09
COL3A1-201ENST00000304636 RNF20Q5VTR2 975 aa15.61■□□□□ 0.09
COL3A1-201ENST00000304636 LETM1O95202 739 aaPredicted RBP15.6■□□□□ 0.09
COL3A1-201ENST00000304636 CAVIN1Q6NZI2 390 aaKnown RBP15.6■□□□□ 0.09
COL3A1-201ENST00000304636 ZNF330Q9Y3S2 320 aaPredicted RBP15.6■□□□□ 0.09
COL3A1-201ENST00000304636 TSR1Q2NL82 804 aaKnown RBP15.6■□□□□ 0.09
COL3A1-201ENST00000304636 HFM1A2PYH4 1435 aa15.6■□□□□ 0.09
COL3A1-201ENST00000304636 TPD52L1Q16890 204 aaPredicted RBP15.6■□□□□ 0.09
COL3A1-201ENST00000304636 IFT57Q9NWB7 429 aa15.6■□□□□ 0.09
COL3A1-201ENST00000304636 VPS37CA5D8V6 355 aaPredicted RBP15.6■□□□□ 0.09
COL3A1-201ENST00000304636 HOMER1Q86YM7 354 aa15.59■□□□□ 0.09
COL3A1-201ENST00000304636 RABEP1Q15276 862 aa15.59■□□□□ 0.09
COL3A1-201ENST00000304636 TCP11L2Q8N4U5 519 aa15.59■□□□□ 0.09
COL3A1-201ENST00000304636 CCDC184Q52MB2 194 aa15.58■□□□□ 0.08
COL3A1-201ENST00000304636 IFIT2P09913 472 aaKnown RBP15.58■□□□□ 0.08
COL3A1-201ENST00000304636 HMGN5P82970 282 aaKnown RBP15.58■□□□□ 0.08
COL3A1-201ENST00000304636 NBPF8Q3BBV2 869 aa15.58■□□□□ 0.08
COL3A1-201ENST00000304636 GRPEL1Q9HAV7 217 aa15.58■□□□□ 0.08
COL3A1-201ENST00000304636 ARGLU1Q9NWB6 273 aaPredicted RBP15.58■□□□□ 0.08
COL3A1-201ENST00000304636 GAPVD1Q14C86 1478 aa15.58■□□□□ 0.08
COL3A1-201ENST00000304636 CLSTN1O94985 981 aa15.58■□□□□ 0.08
COL3A1-201ENST00000304636 CCDC70Q6NSX1 233 aa15.58■□□□□ 0.08
COL3A1-201ENST00000304636 NCBP3Q53F19 620 aaKnown RBP15.57■□□□□ 0.08
COL3A1-201ENST00000304636 LTV1Q96GA3 475 aaPredicted RBP15.57■□□□□ 0.08
COL3A1-201ENST00000304636 MINK1Q8N4C8 1332 aaPredicted RBP15.57■□□□□ 0.08
COL3A1-201ENST00000304636 MCM2P49736 904 aa15.57■□□□□ 0.08
COL3A1-201ENST00000304636 RNF214Q8ND24 703 aa15.57■□□□□ 0.08
COL3A1-201ENST00000304636 LRRFIP1Q32MZ4 808 aaKnown RBP15.57■□□□□ 0.08
COL3A1-201ENST00000304636 CPLX2Q6PUV4 134 aaKnown RBP15.57■□□□□ 0.08
COL3A1-201ENST00000304636 GCC1Q96CN9 775 aa15.57■□□□□ 0.08
COL3A1-201ENST00000304636 TSPY26PQ9H489 355 aa15.57■□□□□ 0.08
COL3A1-201ENST00000304636 TOMM22Q9NS69 142 aa15.57■□□□□ 0.08
COL3A1-201ENST00000304636 HSP90AB4PQ58FF6 505 aa15.56■□□□□ 0.08
COL3A1-201ENST00000304636 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.56■□□□□ 0.08
COL3A1-201ENST00000304636 PTPRGP23470 1445 aa15.56■□□□□ 0.08
COL3A1-201ENST00000304636 PKNOX2Q96KN3 472 aa15.56■□□□□ 0.08
COL3A1-201ENST00000304636 C9orf78Q9NZ63 289 aaPredicted RBP15.55■□□□□ 0.08
COL3A1-201ENST00000304636 BCAR3O75815 825 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms